mRNA_M-pyrifera_M_contig74847.17692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74847.17692.1
Unique NamemRNA_M-pyrifera_M_contig74847.17692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A7R9WT19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT19_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.640e-62
Identity = 111/219 (50.68%), Postives = 153/219 (69.86%), Query Frame = 1
Query:    1 LKRLMRRIQSLDRLEAKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            L +L +++Q L   +A+L GR     E +   +  L + +  +VE  +  +++KH T ++AV D+++YH ALD AL+++H IKIAE+NQ IR LW LTYKG DI +IE+ S  D G+    R++RSYNYRV+MTK    +DMRGRCSAGQ+VLAS+VIRLALA++F  + G +ALDEPT NLD  NK  LA ALA +  +R+AQ   QLI+ITHD +FV
Sbjct:   25 LGKLDKKMQKLSASQARLEGRRSEIVESIRSLKRKLKQPEYKNVEEEYRVSMIKHETTLMAVRDIEKYHSALDHALLQFHSIKIAEINQIIRDLWRLTYKGEDITTIELVSGQDSGA----RASRSYNYRVVMTKGSTRMDMRGRCSAGQRVLASIVIRLALAETFCVNCGCIALDEPTVNLDFNNKRGLAIALAQITADRSAQSNFQLIMITHDEDFV 239          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A7S2EEH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEH2_TRICV)

HSP 1 Score: 201 bits (511), Expect = 8.250e-62
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 1
Query:  118 DLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            + ND++  H + +++  T  +AV DL++YH ALD AL+RYH +KIA++N+ IR LW LTYKG DI +IE+ASN D GS    R+ RSYNYRV+MTK    LDMRGRCSAGQ+VLAS+VI+LALA++F  + G++ LDEPTTNLD  NK  LA ALA ++  RAAQ   QL+VITHD EFV
Sbjct:    4 EYNDIDERHRQKMIEFETTNIAVADLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDITNIELASNQDAGS----RAARSYNYRVVMTKGSTPLDMRGRCSAGQRVLASIVIKLALAETFCLNCGVMCLDEPTTNLDYANKRGLAIALAQIIATRAAQANFQLVVITHDEEFV 179          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A7R9W3X1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3X1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.770e-60
Identity = 110/213 (51.64%), Postives = 148/213 (69.48%), Query Frame = 1
Query:   19 RIQSLDRLEAKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            RIQ  +  +A+  GR     E++   +  L   +  D++  H   ++++ T  +AVEDL++YH ALD AL+RYH +KIA++N+ IR LW LTYKG DI +I++ S  + GS    R+ RSYNYRV+MTK G  LDMRGRCSAGQ+VLAS+VIRLALA++F  + G++ LDEPTTNLD  NK  LA ALA ++  RA+Q   QL+VITHD EFV
Sbjct:  273 RIQKQENTKAQCEGRRAEKKEQIRSLKRKLKTEEYKDIDERHRRKMIEYETTTIAVEDLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDIANIKLESGQEKGS----RAARSYNYRVVMTKGGAELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMCLDEPTTNLDYANKRGLAVALAQIIANRASQTNFQLVVITHDEEFV 481          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A835YS51_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS51_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.500e-57
Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1
Query:   46 AKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            A+L GR     ++    +  L  G    V+    + ++   T  +AV DL++Y  ALD ALMRYH +KIAE+N+ IR LW +TYKGGDI+ IEI S  +DG+S+  R+ RSYNYRV M K    LDM+GRCSAGQ+VLAS+VIRLALA++F  + GILALDEPTTNLD  NK+ LA+ALA ++ +R+ Q   QLIVITHD EFV
Sbjct:   16 AELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSG-EDGASN--RAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFV 216          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A7S2RPE9_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RPE9_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.650e-56
Identity = 101/202 (50.00%), Postives = 141/202 (69.80%), Query Frame = 1
Query:   52 LRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            +RG++R    KL+         + + ++  H   ++++ T V++V DL +YH ALD AL+RYH IKI E+N+ IR +W LTYKG DI +IEI S    G  +A+++++SYNYRV+M+K    LDMRGRCSAGQ+VLAS+VIRLALA++F  + G + LDEPTTNLD  NK  LA ALA ++  R+AQ   QL++ITHD +FV
Sbjct:   24 IRGQQRDLKRKLQTP-------EYDQIDERHRIKMIEYETTVISVADLDKYHSALDKALLRYHGIKIEEINKIIREVWTLTYKGEDISNIEIVS----GEENARKTSKSYNYRVVMSKGNTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGFMTLDEPTTNLDFANKRGLAIALAQIIATRSAQQNFQLVIITHDEDFV 214          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A7RWC8_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWC8_NEMVE)

HSP 1 Score: 187 bits (474), Expect = 2.890e-56
Identity = 104/200 (52.00%), Postives = 139/200 (69.50%), Query Frame = 1
Query:   58 GRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            GR++ F E++   +  L      + E  H + V+   T  +A  DL++Y+ AL+ A+M+YH IK+AE+N+ I+  W  TYKG DI++IEI S  +DGS ++K + R+YNYRV+M K   +LDMRGRCSAGQKVLASL+IRLALA++F  + GIL LDEPTTNLD  N ESLA  LA +++ R AQ   QLIVITHD  FV
Sbjct:    1 GRQKGFEEEIRRFQKDLRSEMYGNAEEKHRQKVIDMKTTKMASGDLEKYYKALNRAIMKYHSIKMAEINKIIKEYWINTYKGNDIDTIEIRSEDEDGSGASK-ARRTYNYRVVMIKGDLALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILTLDEPTTNLDEENIESLANQLANVIRTRQAQRNFQLIVITHDENFV 199          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A813ALA7_9DINO (RAD50 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ALA7_9DINO)

HSP 1 Score: 185 bits (469), Expect = 9.420e-56
Identity = 102/181 (56.35%), Postives = 129/181 (71.27%), Query Frame = 1
Query:  115 GDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            G+   ++  + + +++  T  L VEDL +Y  AL+ ALM YHQ+KI E+N+ IR LW  TY+G DI+ IE+ S+V+D   +AKR  RSYNYRV+MTK    LDMRGRCSAGQKVLASLVIRLALA+SF    GI+ LDEPTTNLD  NK+ LA A+A L+  R  Q   QL++ITHD EFV
Sbjct:   23 GNAAQIDERYRKKMIETHTLKLVVEDLDQYSRALEKALMEYHQLKITEINRIIRELWQATYRGQDIDMIELVSDVED-EGAAKR--RSYNYRVVMTKGPTKLDMRGRCSAGQKVLASLVIRLALAESFCVHCGIITLDEPTTNLDVGNKKGLAEAIAELITARREQTNFQLVIITHDDEFV 200          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A6G1R6R5_9GRUI (RAD50 double strand break repair protein n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1R6R5_9GRUI)

HSP 1 Score: 188 bits (477), Expect = 1.560e-55
Identity = 114/219 (52.05%), Postives = 145/219 (66.21%), Query Frame = 1
Query:    4 KRLMRRIQSLDRLEAKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDG-SSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            K L   I+SL R      GR+R F E++   +  L E    D E  + E ++   T  L  +DL  Y+ ALD A+M +H +K+ E+N+ IR LW  TY+G DIE IEI S+ D+  S+S KR  RSYNYRV+M K   +LDMRGRCSAGQKVLASL+IRLALA++F  + GILALDEPTTNLD  N ESLA AL  ++K R+ Q   QL+VITHD +FV
Sbjct:   58 KHLEETIESLKRNHHVALGRQRGFEEEIVRFKKELRESQFRDAEDKYREMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKR--RSYNYRVVMIKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 274          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: D7FQL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.010e-55
Identity = 107/204 (52.45%), Postives = 138/204 (67.65%), Query Frame = 1
Query:   46 AKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            A+L+GR      ++    A L      ++E  H   +++H T  +AV DL +Y  ALD AL+R+H +KIA++N+ IR LW +TY G DI+ IEI S  D+ S  AKRS   YNYRV+M K+  +LDM+GRCSAGQ+VLAS+VIRLALA++F  S GILALDEPTTNLD  NK  LA ALA ++  R+ Q   QLI ITHD EFV
Sbjct:  204 AELKGRLHGLKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRS---YNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFV 404          
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Match: A0A1S3LMQ4_SALSA (DNA repair protein RAD50-like n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3LMQ4_SALSA)

HSP 1 Score: 188 bits (477), Expect = 1.010e-54
Identity = 105/214 (49.07%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   16 RRIQSLDRLEAKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLKHATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDIESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLASLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ--LQLIVITHDGEFV 651
            RR+  L +  +   GR++ F E++   R  L E      +    + ++   T  LA +DL  Y+ ALD  +M++H +K+ E+N+ IR LW  TY+G DIE +EI S+VD+ SS A    R+YNYRV+M K   +LDMRGRCSAGQKVLASL+IRLALA++F  + GILALDEPTTNLD  N ESLA AL  ++K R+ Q   QL++ITHD +FV
Sbjct:  132 RRVDDLKKNRSVALGRQKGFEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKDLDIYYKALDQTIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKRRTYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQRNFQLLIITHDEDFV 345          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74847.17692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WT19_9STRA1.640e-6250.68Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2EEH2_TRICV8.250e-6258.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9W3X1_9STRA3.770e-6051.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A835YS51_9STRA1.500e-5753.92P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2RPE9_9STRA1.650e-5650.00Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A7RWC8_NEMVE2.890e-5652.00Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A813ALA7_9DINO9.420e-5656.35RAD50 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A6G1R6R5_9GRUI1.560e-5552.05RAD50 double strand break repair protein n=1 Tax=H... [more]
D7FQL8_ECTSI3.010e-5552.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3LMQ4_SALSA1.010e-5449.07DNA repair protein RAD50-like n=1 Tax=Salmo salar ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74847contigM-pyrifera_M_contig74847:1..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue1.2e-48
Seed eggNOG ortholog36331.EPrPI00000016180
Preferred nameRAD50
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
EggNOG free text desc.DNA repair protein RAD50. Source PGD
EggNOG OGs1MEH3@121069,COG0419@1,KOG0962@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size651
Cds size639
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.7338026-CDS-M-pyrifera_M_contig74847:0..6391622816646.7338026-CDS-M-pyrifera_M_contig74847:0..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74847 1..639 -
1692278096.8213491-CDS-M-pyrifera_M_contig74847:0..6391692278096.8213491-CDS-M-pyrifera_M_contig74847:0..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74847 1..639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.7461371-UTR-M-pyrifera_M_contig74847:639..6511622816646.7461371-UTR-M-pyrifera_M_contig74847:639..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74847 640..651 -
1692278096.8356493-UTR-M-pyrifera_M_contig74847:639..6511692278096.8356493-UTR-M-pyrifera_M_contig74847:639..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74847 640..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74847.17692.1prot_M-pyrifera_M_contig74847.17692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74847 1..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74847.17692.1

>prot_M-pyrifera_M_contig74847.17692.1 ID=prot_M-pyrifera_M_contig74847.17692.1|Name=mRNA_M-pyrifera_M_contig74847.17692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
MRRIQSLDRLEAKLRGRERTFAEKLEHTRALLAEGDLNDVERTHGENVLK
HATAVLAVEDLQRYHDALDAALMRYHQIKIAEVNQSIRRLWDLTYKGGDI
ESIEIASNVDDGSSSAKRSTRSYNYRVMMTKSGHSLDMRGRCSAGQKVLA
SLVIRLALADSFTASSGILALDEPTTNLDSRNKESLARALALLVKERAAQ
LQLIVITHDGEFV
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mRNA from alignment at M-pyrifera_M_contig74847:1..651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74847.17692.1 ID=mRNA_M-pyrifera_M_contig74847.17692.1|Name=mRNA_M-pyrifera_M_contig74847.17692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig74847:1..651- (Macrocystis pyrifera P11B4 male)
TTGAAGCGCTTGATGCGTCGAATTCAGTCATTGGACCGCCTGGAGGCCAA GTTACGAGGACGTGAACGAACATTTGCAGAAAAGTTGGAACACACGAGAG CATTGTTGGCAGAGGGTGACTTGAATGATGTGGAGCGAACGCACGGAGAA AATGTGTTGAAGCATGCAACTGCTGTGCTCGCGGTTGAAGATTTGCAGCG ATACCATGATGCTCTTGATGCAGCGTTGATGCGTTACCATCAAATCAAAA TTGCAGAAGTGAATCAGAGTATTCGACGACTGTGGGATCTCACATACAAA GGAGGTGACATTGAATCCATTGAAATTGCTTCCAATGTTGATGATGGATC ATCTTCAGCCAAACGATCCACTCGGTCATACAACTACCGAGTAATGATGA CAAAGAGTGGACATTCCCTTGATATGCGTGGACGTTGTTCAGCTGGTCAA AAAGTCCTTGCATCTCTTGTCATTCGCCTTGCACTTGCTGACAGCTTTAC AGCATCCTCTGGCATCCTTGCTCTTGATGAACCAACCACAAATCTTGATT CACGCAACAAGGAATCTCTTGCCCGTGCCCTCGCACTCCTCGTCAAAGAA AGAGCAGCACAATTACAGCTCATTGTCATCACACACGATGGTGAATTTGT T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74847:1..651-

>mRNA_M-pyrifera_M_contig74847.17692.1 ID=mRNA_M-pyrifera_M_contig74847.17692.1|Name=mRNA_M-pyrifera_M_contig74847.17692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig74847:1..651- (Macrocystis pyrifera P11B4 male)
ATGCGTCGAATTCAGTCATTGGACCGCCTGGAGGCCAAGTTACGAGGACG
TGAACGAACATTTGCAGAAAAGTTGGAACACACGAGAGCATTGTTGGCAG
AGGGTGACTTGAATGATGTGGAGCGAACGCACGGAGAAAATGTGTTGAAG
CATGCAACTGCTGTGCTCGCGGTTGAAGATTTGCAGCGATACCATGATGC
TCTTGATGCAGCGTTGATGCGTTACCATCAAATCAAAATTGCAGAAGTGA
ATCAGAGTATTCGACGACTGTGGGATCTCACATACAAAGGAGGTGACATT
GAATCCATTGAAATTGCTTCCAATGTTGATGATGGATCATCTTCAGCCAA
ACGATCCACTCGGTCATACAACTACCGAGTAATGATGACAAAGAGTGGAC
ATTCCCTTGATATGCGTGGACGTTGTTCAGCTGGTCAAAAAGTCCTTGCA
TCTCTTGTCATTCGCCTTGCACTTGCTGACAGCTTTACAGCATCCTCTGG
CATCCTTGCTCTTGATGAACCAACCACAAATCTTGATTCACGCAACAAGG
AATCTCTTGCCCGTGCCCTCGCACTCCTCGTCAAAGAAAGAGCAGCACAA
TTACAGCTCATTGTCATCACACACGATGGTGAATTTGTTATGCGTCGAAT
TCAGTCATTGGACCGCCTGGAGGCCAAGTTACGAGGACGTGAACGAACAT
TTGCAGAAAAGTTGGAACACACGAGAGCATTGTTGGCAGAGGGTGACTTG
AATGATGTGGAGCGAACGCACGGAGAAAATGTGTTGAAGCATGCAACTGC
TGTGCTCGCGGTTGAAGATTTGCAGCGATACCATGATGCTCTTGATGCAG
CGTTGATGCGTTACCATCAAATCAAAATTGCAGAAGTGAATCAGAGTATT
CGACGACTGTGGGATCTCACATACAAAGGAGGTGACATTGAATCCATTGA
AATTGCTTCCAATGTTGATGATGGATCATCTTCAGCCAAACGATCCACTC
GGTCATACAACTACCGAGTAATGATGACAAAGAGTGGACATTCCCTTGAT
ATGCGTGGACGTTGTTCAGCTGGTCAAAAAGTCCTTGCATCTCTTGTCAT
TCGCCTTGCACTTGCTGACAGCTTTACAGCATCCTCTGGCATCCTTGCTC
TTGATGAACCAACCACAAATCTTGATTCACGCAACAAGGAATCTCTTGCC
CGTGCCCTCGCACTCCTCGTCAAAGAAAGAGCAGCACAATTACAGCTCAT
TGTCATCACACACGATGGTGAATTTGTT
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