mRNA_M-pyrifera_M_contig74571.17644.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74571.17644.1
Unique NamemRNA_M-pyrifera_M_contig74571.17644.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A7C1WIH9_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WIH9_9BACT)

HSP 1 Score: 161 bits (408), Expect = 1.180e-46
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            R+AYLIWRKP+M+VN DTF  ALL QAGG+N F D   RYP +  A+LAAA  D VFLCTEPF F+D+HI EL+E TG+  ER RI DGEYLSWHGSRTPDG+DYA +L+
Sbjct:  210 RWAYLIWRKPWMSVNRDTFVDALLSQAGGINVFADRETRYPEITPAELAAARPDRVFLCTEPFLFKDEHIDELSELTGLSRERFRIVDGEYLSWHGSRTPDGIDYAAALI 319          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A521KGJ4_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KGJ4_9BACT)

HSP 1 Score: 155 bits (393), Expect = 4.580e-45
Identity = 73/110 (66.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            RFAYLIWRKP+M+ N DTFAS LL QAGG N F D +ERYP     +LA A  + V LCTEPFPFQDKH  EL+E TG+   R  IADGEYLSWHGSRTPDG+DYAE ++
Sbjct:  137 RFAYLIWRKPWMSCNRDTFASELLAQAGGENVFADASERYPEFTPDELARARPELVLLCTEPFPFQDKHADELSELTGLARARFAIADGEYLSWHGSRTPDGIDYAERMI 246          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A2D5AYZ2_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AYZ2_9BACT)

HSP 1 Score: 154 bits (389), Expect = 1.330e-44
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    4 FAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            +AYLIWRKP M+VN DTF+ ALL  AGG N FG  A+RYP +  ADL  A+   V LCTEPFPFQ++HIAEL  ATG P+ R RIADGEYLSWHGSRTPDG+DYA  L+
Sbjct:  138 YAYLIWRKPLMSVNRDTFSDALLALAGGRNVFGAHADRYPEITIADLTGADPALVLLCTEPFPFQEEHIAELVAATGWPSIRFRIADGEYLSWHGSRTPDGIDYAADLI 246          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A2D6HKC9_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HKC9_9BACT)

HSP 1 Score: 152 bits (384), Expect = 7.740e-44
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            R+AY+IWR+P+MTVN DTF+ ALLE AGG N F +   RYP VE ADLAAA+ + V LC+EPFPF+ +HIAEL+  TG+ AER  +ADGEYLSWHGSRTP G+D+AE L+
Sbjct:  137 RWAYMIWREPWMTVNRDTFSHALLELAGGRNVFAEREPRYPTVEPADLAAADPELVLLCSEPFPFEREHIAELSGLTGLCAERFALADGEYLSWHGSRTPAGIDHAEELI 246          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A7Y5URM8_9PLAN (ABC transporter substrate-binding protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5URM8_9PLAN)

HSP 1 Score: 145 bits (365), Expect = 5.510e-41
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    4 FAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            +AYLIWRKP+M+VN DTF  ALL  AGG N FG   +RYP +   +LA A    VFLCTEPF F+ +H  EL+ ATG+  ER  IADGEYLSWHGSRTPDG+DYAE LL
Sbjct:  138 WAYLIWRKPWMSVNRDTFVDALLALAGGRNVFGAREQRYPEITLEELAKAAPQRVFLCTEPFSFKPEHADELSAATGLQRERFVIADGEYLSWHGSRTPDGIDYAEGLL 246          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A7C8D0I8_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8D0I8_9BACT)

HSP 1 Score: 144 bits (363), Expect = 1.290e-40
Identity = 69/110 (62.73%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            RFAYLIWR P+M+VN DTFASALL  AGGVN F    +RYP +E + LAAA  D V L TEPF F   H+ E+A A G+ A R+ + DGEYLSWHGSRTPDGVDYA  L+
Sbjct:  138 RFAYLIWRGPWMSVNADTFASALLCDAGGVNVFSGEPQRYPVIELSALAAARPDTVLLSTEPFLFNATHVVEVAAALGLDARRVAVVDGEYLSWHGSRTPDGVDYAAGLV 247          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: W0RI21_9BACT (ABC-type transporter, periplasmic subunit n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RI21_9BACT)

HSP 1 Score: 143 bits (361), Expect = 2.090e-40
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            R+AYLIWR P+MTV GDTF SALL+ AGG N F     RYP +E A+LAAA+   V L +EPFPF D+H+ ELA AT +P +R R+ DGE LSWHGSRT  G+DYA  LL
Sbjct:  137 RWAYLIWRNPWMTVGGDTFVSALLDAAGGENVFATRTPRYPEIEPAELAAADPALVLLASEPFPFDDRHVDELAAATALPRDRFRLVDGELLSWHGSRTARGIDYAAELL 246          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A524IY57_9BACT (Cobalamin-binding protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524IY57_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.180e-39
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    4 FAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL-WEGAAAG 351
            FAYLIWR P+MTVN DTF S+LLE  GG N FGD+++RYP ++AA LAAA+ D V L +EPFPF  +H  EL  +TG+  +R  + DGE LSWHGSRTP G+DYAE ++   G+A+G
Sbjct:  187 FAYLIWRDPWMTVNADTFVSSLLELPGGHNVFGDMSDRYPTIDAARLAAADPDLVLLSSEPFPFIQQHARELERSTGLSPDRFILVDGELLSWHGSRTPAGIDYAEGVIRGAGSASG 303          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A7V4IXQ4_9BACT (Cobalamin-binding protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4IXQ4_9BACT)

HSP 1 Score: 141 bits (355), Expect = 4.290e-39
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            R+AYLIWR P+M V GDT+ SALL +AGG N FG  AERYP V   DL ++E + VFL +EPFPF ++H+ EL +ATG P  R  + DG+ LSWHGSRT +G+ YAE LL
Sbjct:  171 RYAYLIWRNPWMAVGGDTYVSALLAEAGGSNVFGGYAERYPTVSVDDLVSSEPEAVFLASEPFPFAERHVVELMQATGWPRSRFELVDGQLLSWHGSRTLEGLRYAERLL 280          
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Match: A0A2D5W944_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W944_9BACT)

HSP 1 Score: 139 bits (350), Expect = 1.540e-38
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAAAELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTPDGVDYAESLL 330
            RFAYLIWR+P+M V  DT+AS L+  AGG N      ERY  VE A LAAA  D V LCTEPFPF + H AELA+ TG+P     +ADGE++SWHGSRTP G+DYA  LL
Sbjct:  152 RFAYLIWRQPWMAVGADTYASDLIGLAGGENVLAGSIERYGEVEPATLAAARPDLVLLCTEPFPFDETHAAELADLTGLPRASFSVADGEFISWHGSRTPAGIDYAADLL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74571.17644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1WIH9_9BACT1.180e-4667.27Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A521KGJ4_9BACT4.580e-4566.36Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A2D5AYZ2_9BACT1.330e-4466.97Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A2D6HKC9_9BACT7.740e-4464.55Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A7Y5URM8_9PLAN5.510e-4163.30ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7C8D0I8_9BACT1.290e-4062.73Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
W0RI21_9BACT2.090e-4060.91ABC-type transporter, periplasmic subunit n=1 Tax=... [more]
A0A524IY57_9BACT1.180e-3958.12Cobalamin-binding protein n=1 Tax=Gemmatimonadales... [more]
A0A7V4IXQ4_9BACT4.290e-3958.18Cobalamin-binding protein n=1 Tax=Armatimonadetes ... [more]
A0A2D5W944_9BACT1.540e-3860.00Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74571contigM-pyrifera_M_contig74571:18..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.7
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog861299.J421_1521
Preferred namefecB
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.abc-type fe3 -hydroxamate transport system, periplasmic component
EggNOG OGsCOG0614@1,COG0614@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.2834017-CDS-M-pyrifera_M_contig74571:17..3741622816644.2834017-CDS-M-pyrifera_M_contig74571:17..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74571 18..374 +
1692278095.5282285-CDS-M-pyrifera_M_contig74571:17..3741692278095.5282285-CDS-M-pyrifera_M_contig74571:17..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74571 18..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74571.17644.1prot_M-pyrifera_M_contig74571.17644.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74571 18..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74571.17644.1

>prot_M-pyrifera_M_contig74571.17644.1 ID=prot_M-pyrifera_M_contig74571.17644.1|Name=mRNA_M-pyrifera_M_contig74571.17644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
RFAYLIWRKPYMTVNGDTFASALLEQAGGVNAFGDLAERYPAVEAADLAA
AELDHVFLCTEPFPFQDKHIAELAEATGIPAERIRIADGEYLSWHGSRTP
DGVDYAESLLWEGAAAGA*
back to top

mRNA from alignment at M-pyrifera_M_contig74571:18..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74571.17644.1 ID=mRNA_M-pyrifera_M_contig74571.17644.1|Name=mRNA_M-pyrifera_M_contig74571.17644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig74571:18..374+ (Macrocystis pyrifera P11B4 male)
CGCTTCGCGTACCTGATCTGGCGCAAGCCCTACATGACCGTGAACGGCGA CACCTTTGCGAGCGCGCTGCTCGAGCAGGCCGGCGGCGTGAACGCCTTTG GCGACCTGGCGGAGCGCTATCCGGCGGTCGAGGCGGCCGACCTCGCCGCG GCCGAGCTGGACCACGTCTTCCTGTGCACCGAGCCGTTCCCGTTCCAGGA CAAGCACATCGCCGAGCTCGCGGAGGCCACTGGGATCCCCGCGGAGCGCA TCCGGATCGCGGACGGCGAGTACCTCTCGTGGCACGGATCGCGCACGCCG GACGGCGTGGACTACGCCGAGTCGCTGCTCTGGGAAGGCGCCGCCGCCGG GGCTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74571:18..374+

>mRNA_M-pyrifera_M_contig74571.17644.1 ID=mRNA_M-pyrifera_M_contig74571.17644.1|Name=mRNA_M-pyrifera_M_contig74571.17644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig74571:18..374+ (Macrocystis pyrifera P11B4 male)
CGCTTCGCGTACCTGATCTGGCGCAAGCCCTACATGACCGTGAACGGCGA
CACCTTTGCGAGCGCGCTGCTCGAGCAGGCCGGCGGCGTGAACGCCTTTG
GCGACCTGGCGGAGCGCTATCCGGCGGTCGAGGCGGCCGACCTCGCCGCG
GCCGAGCTGGACCACGTCTTCCTGTGCACCGAGCCGTTCCCGTTCCAGGA
CAAGCACATCGCCGAGCTCGCGGAGGCCACTGGGATCCCCGCGGAGCGCA
TCCGGATCGCGGACGGCGAGTACCTCTCGTGGCACGGATCGCGCACGCCG
GACGGCGTGGACTACGCCGAGTCGCTGCTCTGGGAAGGCGCCGCCGCCGG
GGCTTGACGCTTCGCGTACCTGATCTGGCGCAAGCCCTACATGACCGTGA
ACGGCGACACCTTTGCGAGCGCGCTGCTCGAGCAGGCCGGCGGCGTGAAC
GCCTTTGGCGACCTGGCGGAGCGCTATCCGGCGGTCGAGGCGGCCGACCT
CGCCGCGGCCGAGCTGGACCACGTCTTCCTGTGCACCGAGCCGTTCCCGT
TCCAGGACAAGCACATCGCCGAGCTCGCGGAGGCCACTGGGATCCCCGCG
GAGCGCATCCGGATCGCGGACGGCGAGTACCTCTCGTGGCACGGATCGCG
CACGCCGGACGGCGTGGACTACGCCGAGTCGCTGCTCTGGGAAGGCGCCG
CCGCCGGGGCTTGA
back to top