mRNA_M-pyrifera_M_contig74521.17636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74521.17636.1
Unique NamemRNA_M-pyrifera_M_contig74521.17636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74521.17636.1 vs. uniprot
Match: F0ZKN4_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZKN4_DICPU)

HSP 1 Score: 65.9 bits (159), Expect = 4.210e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 WQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVNFLGMKQTKIE 180
            WQ++H GW  YD +AS +VE A+QE+  NP   DVRSV+SG++AYQ++F    QT I+
Sbjct:  476 WQFEHGGWLDYDNDASKVVEEAYQEWLLNPN-IDVRSVKSGHWAYQIDFKHNTQTNIQ 532
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BLAST of mRNA_M-pyrifera_M_contig74521.17636.1 vs. uniprot
Match: Q54E45_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54E45_DICDI)

HSP 1 Score: 64.3 bits (155), Expect = 1.470e-10
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    7 WQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVNFLGMKQTKIE 180
            WQY H  W  YD +AS +VE A+QE+  NP   DVRSV+SG +AYQ++F   KQT I+
Sbjct:  579 WQYLHGTWNDYDNDASKVVEEAYQEWLTNP-YTDVRSVKSGAWAYQIDFKQNKQTNIQ 635
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74521.17636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0ZKN4_DICPU4.210e-1151.72Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
Q54E45_DICDI1.470e-1053.45Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74521contigM-pyrifera_M_contig74521:3..182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog5786.XP_003287969.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WWE domain
EggNOG OGs296ZM@1,2RDYY@2759,3XCVM@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.9499853-CDS-M-pyrifera_M_contig74521:2..1821622816643.9499853-CDS-M-pyrifera_M_contig74521:2..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74521 3..182 -
1692278095.3580294-CDS-M-pyrifera_M_contig74521:2..1821692278095.3580294-CDS-M-pyrifera_M_contig74521:2..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74521 3..182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74521.17636.1prot_M-pyrifera_M_contig74521.17636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74521 3..182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74521.17636.1

>prot_M-pyrifera_M_contig74521.17636.1 ID=prot_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
HFWQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVN
FLGMKQTKIE
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mRNA from alignment at M-pyrifera_M_contig74521:3..182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74521.17636.1 ID=mRNA_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig74521:3..182- (Macrocystis pyrifera P11B4 male)
CACTTCTGGCAGTACCAGCACAACGGCTGGCAGCCCTACGACGGCAACGC
CAGTCTCTTGGTCGAGCGCGCTTTCCAGGAGTTCCAGGGCAACCCCGGCA
GGTGCGACGTACGCAGCGTGAGGTCAGGCTACTTTGCCTACCAGGTGAAT
TTCCTCGGCATGAAGCAAACCAAGATCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74521:3..182-

>mRNA_M-pyrifera_M_contig74521.17636.1 ID=mRNA_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig74521:3..182- (Macrocystis pyrifera P11B4 male)
CACTTCTGGCAGTACCAGCACAACGGCTGGCAGCCCTACGACGGCAACGC
CAGTCTCTTGGTCGAGCGCGCTTTCCAGGAGTTCCAGGGCAACCCCGGCA
GGTGCGACGTACGCAGCGTGAGGTCAGGCTACTTTGCCTACCAGGTGAAT
TTCCTCGGCATGAAGCAAACCAAGATCGAGCACTTCTGGCAGTACCAGCA
CAACGGCTGGCAGCCCTACGACGGCAACGCCAGTCTCTTGGTCGAGCGCG
CTTTCCAGGAGTTCCAGGGCAACCCCGGCAGGTGCGACGTACGCAGCGTG
AGGTCAGGCTACTTTGCCTACCAGGTGAATTTCCTCGGCATGAAGCAAAC
CAAGATCGAG
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