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Homology
BLAST of mRNA_M-pyrifera_M_contig74521.17636.1 vs. uniprot
Match: F0ZKN4_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZKN4_DICPU) HSP 1 Score: 65.9 bits (159), Expect = 4.210e-11 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 7 WQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVNFLGMKQTKIE 180
WQ++H GW YD +AS +VE A+QE+ NP DVRSV+SG++AYQ++F QT I+
Sbjct: 476 WQFEHGGWLDYDNDASKVVEEAYQEWLLNPN-IDVRSVKSGHWAYQIDFKHNTQTNIQ 532
BLAST of mRNA_M-pyrifera_M_contig74521.17636.1 vs. uniprot
Match: Q54E45_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54E45_DICDI) HSP 1 Score: 64.3 bits (155), Expect = 1.470e-10 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 7 WQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVNFLGMKQTKIE 180
WQY H W YD +AS +VE A+QE+ NP DVRSV+SG +AYQ++F KQT I+
Sbjct: 579 WQYLHGTWNDYDNDASKVVEEAYQEWLTNP-YTDVRSVKSGAWAYQIDFKQNKQTNIQ 635
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 65.1 |
Seed ortholog evalue | 1.3e-08 |
Seed eggNOG ortholog | 5786.XP_003287969.1 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | WWE domain |
EggNOG OGs | 296ZM@1,2RDYY@2759,3XCVM@554915 |
COG Functional cat. | S |
Best tax level | Amoebozoa |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 180 |
Cds size | 180 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816643.9499853-CDS-M-pyrifera_M_contig74521:2..182 | 1622816643.9499853-CDS-M-pyrifera_M_contig74521:2..182 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74521 3..182 - |
1692278095.3580294-CDS-M-pyrifera_M_contig74521:2..182 | 1692278095.3580294-CDS-M-pyrifera_M_contig74521:2..182 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74521 3..182 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74521.17636.1 >prot_M-pyrifera_M_contig74521.17636.1 ID=prot_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
HFWQYQHNGWQPYDGNASLLVERAFQEFQGNPGRCDVRSVRSGYFAYQVN FLGMKQTKIE back to topmRNA from alignment at M-pyrifera_M_contig74521:3..182- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig74521.17636.1 ID=mRNA_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig74521:3..182- (Macrocystis pyrifera P11B4 male) CACTTCTGGCAGTACCAGCACAACGGCTGGCAGCCCTACGACGGCAACGC
CAGTCTCTTGGTCGAGCGCGCTTTCCAGGAGTTCCAGGGCAACCCCGGCA
GGTGCGACGTACGCAGCGTGAGGTCAGGCTACTTTGCCTACCAGGTGAAT
TTCCTCGGCATGAAGCAAACCAAGATCGAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig74521:3..182- >mRNA_M-pyrifera_M_contig74521.17636.1 ID=mRNA_M-pyrifera_M_contig74521.17636.1|Name=mRNA_M-pyrifera_M_contig74521.17636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig74521:3..182- (Macrocystis pyrifera P11B4 male) CACTTCTGGCAGTACCAGCACAACGGCTGGCAGCCCTACGACGGCAACGC CAGTCTCTTGGTCGAGCGCGCTTTCCAGGAGTTCCAGGGCAACCCCGGCA GGTGCGACGTACGCAGCGTGAGGTCAGGCTACTTTGCCTACCAGGTGAAT TTCCTCGGCATGAAGCAAACCAAGATCGAGCACTTCTGGCAGTACCAGCA CAACGGCTGGCAGCCCTACGACGGCAACGCCAGTCTCTTGGTCGAGCGCG CTTTCCAGGAGTTCCAGGGCAACCCCGGCAGGTGCGACGTACGCAGCGTG AGGTCAGGCTACTTTGCCTACCAGGTGAATTTCCTCGGCATGAAGCAAAC CAAGATCGAG back to top
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