mRNA_M-pyrifera_M_contig74231.17582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74231.17582.1
Unique NamemRNA_M-pyrifera_M_contig74231.17582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74231.17582.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.350e-10
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   10 VLLAFIFCAVSYLLGWHGYLVAGNVTTIEYFKVRRCERN 126
            ++L F+FC+VSYLL WHGYLVAGNVTTIEYFK +R  R+
Sbjct:  216 LVLGFVFCSVSYLLIWHGYLVAGNVTTIEYFKWKRSMRD 254
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74231.17582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI4.350e-1071.79Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74231contigM-pyrifera_M_contig74231:268..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FJY9
KEGG rclassRC01904
KEGG koko:K14423,ko:K20028
KEGG ReactionR07482
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0000138,GO:0000254,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005802,GO:0006629,GO:0006694,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0010150,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016417,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016746,GO:0016747,GO:0019222,GO:0019707,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0055114,GO:0065007,GO:0071704,GO:0090693,GO:0097708,GO:0098791,GO:0098827,GO:0099402,GO:0140096,GO:1900055,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:2000024,GO:2000026,GO:2000377
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1315@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-18_003140.1
EC2.3.1.225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size126
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.8998542-CDS-M-pyrifera_M_contig74231:267..3931622816640.8998542-CDS-M-pyrifera_M_contig74231:267..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74231 268..393 +
1692278093.4865317-CDS-M-pyrifera_M_contig74231:267..3931692278093.4865317-CDS-M-pyrifera_M_contig74231:267..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74231 268..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74231.17582.1prot_M-pyrifera_M_contig74231.17582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74231 268..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74231.17582.1

>prot_M-pyrifera_M_contig74231.17582.1 ID=prot_M-pyrifera_M_contig74231.17582.1|Name=mRNA_M-pyrifera_M_contig74231.17582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MRRVLLAFIFCAVSYLLGWHGYLVAGNVTTIEYFKVRRCERN
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mRNA from alignment at M-pyrifera_M_contig74231:268..393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74231.17582.1 ID=mRNA_M-pyrifera_M_contig74231.17582.1|Name=mRNA_M-pyrifera_M_contig74231.17582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig74231:268..393+ (Macrocystis pyrifera P11B4 male)
ATGCGCAGGGTACTTCTCGCCTTCATATTTTGCGCCGTCTCGTACCTCCT
GGGGTGGCATGGCTACTTGGTGGCCGGCAACGTGACCACAATAGAGTACT
TCAAGGTCAGGCGGTGCGAGCGCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74231:268..393+

>mRNA_M-pyrifera_M_contig74231.17582.1 ID=mRNA_M-pyrifera_M_contig74231.17582.1|Name=mRNA_M-pyrifera_M_contig74231.17582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig74231:268..393+ (Macrocystis pyrifera P11B4 male)
ATGCGCAGGGTACTTCTCGCCTTCATATTTTGCGCCGTCTCGTACCTCCT
GGGGTGGCATGGCTACTTGGTGGCCGGCAACGTGACCACAATAGAGTACT
TCAAGGTCAGGCGGTGCGAGCGCAATATGCGCAGGGTACTTCTCGCCTTC
ATATTTTGCGCCGTCTCGTACCTCCTGGGGTGGCATGGCTACTTGGTGGC
CGGCAACGTGACCACAATAGAGTACTTCAAGGTCAGGCGGTGCGAGCGCA
AT
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