mRNA_M-pyrifera_M_contig74168.17563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74168.17563.1
Unique NamemRNA_M-pyrifera_M_contig74168.17563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig74168.17563.1 vs. uniprot
Match: D7FYL8_ECTSI (Anaphase-promoting complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-18
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MAAAGRNFSIIHEKIMPCRLVCMCPTMDLVASIHADGQLSVHR 129
            MAAAGRNFSIIHEK++ CRLVCMCPTMDLVAS+H DGQLSVHR
Sbjct:    1 MAAAGRNFSIIHEKLLHCRLVCMCPTMDLVASLHVDGQLSVHR 43
[Close]
BLAST of mRNA_M-pyrifera_M_contig74168.17563.1 vs. uniprot
Match: A0A150G3A6_GONPE (Anaphase-promoting complex subunit 4 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G3A6_GONPE)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    7 AAGRNFSIIHEKIMPCRLV--CMCPTMDLVASIHADGQLSVHRFE 135
            A    FS++HEK +  ++V  C CPTMDL+A +  DGQLSVHR E
Sbjct:   16 AGAMAFSVLHEKALSQQVVLGCWCPTMDLLALVSDDGQLSVHRLE 60
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74168.17563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL8_ECTSI1.440e-1888.37Anaphase-promoting complex subunit 4 n=2 Tax=Ectoc... [more]
A0A150G3A6_GONPE2.340e-653.33Anaphase-promoting complex subunit 4 n=1 Tax=Goniu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74168contigM-pyrifera_M_contig74168:116..250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.3e-15
Seed eggNOG ortholog2880.D7FYL8
Preferred nameANAPC4
KEGG koko:K03351
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000151,GO:0000152,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009908,GO:0009987,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0035670,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0090068,GO:0090567,GO:0099402,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.anaphase-promoting complex-dependent catabolic process
EggNOG OGsKOG4640@1,KOG4640@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.9494722-CDS-M-pyrifera_M_contig74168:115..2501622816639.9494722-CDS-M-pyrifera_M_contig74168:115..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74168 116..250 -
1692278092.979986-CDS-M-pyrifera_M_contig74168:115..2501692278092.979986-CDS-M-pyrifera_M_contig74168:115..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74168 116..250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74168.17563.1prot_M-pyrifera_M_contig74168.17563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74168 116..250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74168.17563.1

>prot_M-pyrifera_M_contig74168.17563.1 ID=prot_M-pyrifera_M_contig74168.17563.1|Name=mRNA_M-pyrifera_M_contig74168.17563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MAAAGRNFSIIHEKIMPCRLVCMCPTMDLVASIHADGQLSVHRFE
back to top

mRNA from alignment at M-pyrifera_M_contig74168:116..250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74168.17563.1 ID=mRNA_M-pyrifera_M_contig74168.17563.1|Name=mRNA_M-pyrifera_M_contig74168.17563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig74168:116..250- (Macrocystis pyrifera P11B4 male)
ATGGCCGCCGCAGGTCGAAACTTCTCCATCATCCATGAGAAAATTATGCC
TTGCCGTCTGGTATGTATGTGCCCCACCATGGACTTGGTGGCTTCAATCC
ATGCAGACGGGCAGCTCTCCGTGCACAGGTTCGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74168:116..250-

>mRNA_M-pyrifera_M_contig74168.17563.1 ID=mRNA_M-pyrifera_M_contig74168.17563.1|Name=mRNA_M-pyrifera_M_contig74168.17563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig74168:116..250- (Macrocystis pyrifera P11B4 male)
ATGGCCGCCGCAGGTCGAAACTTCTCCATCATCCATGAGAAAATTATGCC
TTGCCGTCTGGTATGTATGTGCCCCACCATGGACTTGGTGGCTTCAATCC
ATGCAGACGGGCAGCTCTCCGTGCACAGGTTCGAAATGGCCGCCGCAGGT
CGAAACTTCTCCATCATCCATGAGAAAATTATGCCTTGCCGTCTGGTATG
TATGTGCCCCACCATGGACTTGGTGGCTTCAATCCATGCAGACGGGCAGC
TCTCCGTGCACAGGTTCGAA
back to top