mRNA_M-pyrifera_M_contig7390.17509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7390.17509.1
Unique NamemRNA_M-pyrifera_M_contig7390.17509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7390.17509.1 vs. uniprot
Match: A0A2R5GUZ2_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUZ2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-9
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 GQPAVVICFSCIRFDEG-RGHYCRSCFDTYHPWYRVAHKWAPVEDAEGATEQIDQQVY--RTAIERTVSDLRGLLQITSS 231
            G PAV+ CFSCI+FD   +GH+C+SCF   HP +R+ H +  + D + A  + + +++  R  IER V   + +L+I S+
Sbjct:  277 GTPAVIKCFSCIKFDPLLQGHFCKSCFLHSHPPHRLEHNFIRINDIDSAPLKQEWRIHMQRLEIERRVLQYKDVLEIISA 356
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7390.17509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5GUZ2_9STRA1.050e-938.75Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7390contigM-pyrifera_M_contig7390:12598..12828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.3e-07
Seed eggNOG ortholog4792.ETI49436
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2D0S7@1,2SF74@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_003860.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.9968314-CDS-M-pyrifera_M_contig7390:12597..128281622816636.9968314-CDS-M-pyrifera_M_contig7390:12597..12828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7390 12598..12828 +
1692278091.224504-CDS-M-pyrifera_M_contig7390:12597..128281692278091.224504-CDS-M-pyrifera_M_contig7390:12597..12828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7390 12598..12828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7390.17509.1prot_M-pyrifera_M_contig7390.17509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7390 12598..12828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7390.17509.1

>prot_M-pyrifera_M_contig7390.17509.1 ID=prot_M-pyrifera_M_contig7390.17509.1|Name=mRNA_M-pyrifera_M_contig7390.17509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
GQPAVVICFSCIRFDEGRGHYCRSCFDTYHPWYRVAHKWAPVEDAEGATE
QIDQQVYRTAIERTVSDLRGLLQITSS
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mRNA from alignment at M-pyrifera_M_contig7390:12598..12828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7390.17509.1 ID=mRNA_M-pyrifera_M_contig7390.17509.1|Name=mRNA_M-pyrifera_M_contig7390.17509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig7390:12598..12828+ (Macrocystis pyrifera P11B4 male)
GGTCAACCAGCGGTCGTTATTTGCTTTAGCTGTATCAGGTTCGACGAAGG
GCGTGGCCATTACTGCAGAAGTTGTTTTGATACCTACCACCCGTGGTATC
GGGTAGCACACAAGTGGGCACCGGTGGAGGACGCGGAGGGTGCCACGGAA
CAGATAGACCAGCAAGTCTACAGGACCGCCATAGAGAGGACTGTTTCTGA
TTTACGAGGATTACTTCAAATTACGTCCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7390:12598..12828+

>mRNA_M-pyrifera_M_contig7390.17509.1 ID=mRNA_M-pyrifera_M_contig7390.17509.1|Name=mRNA_M-pyrifera_M_contig7390.17509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig7390:12598..12828+ (Macrocystis pyrifera P11B4 male)
GGTCAACCAGCGGTCGTTATTTGCTTTAGCTGTATCAGGTTCGACGAAGG
GCGTGGCCATTACTGCAGAAGTTGTTTTGATACCTACCACCCGTGGTATC
GGGTAGCACACAAGTGGGCACCGGTGGAGGACGCGGAGGGTGCCACGGAA
CAGATAGACCAGCAAGTCTACAGGACCGCCATAGAGAGGACTGTTTCTGA
TTTACGAGGATTACTTCAAATTACGTCCTCTGGTCAACCAGCGGTCGTTA
TTTGCTTTAGCTGTATCAGGTTCGACGAAGGGCGTGGCCATTACTGCAGA
AGTTGTTTTGATACCTACCACCCGTGGTATCGGGTAGCACACAAGTGGGC
ACCGGTGGAGGACGCGGAGGGTGCCACGGAACAGATAGACCAGCAAGTCT
ACAGGACCGCCATAGAGAGGACTGTTTCTGATTTACGAGGATTACTTCAA
ATTACGTCCTCT
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