mRNA_M-pyrifera_M_contig73709.17468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73709.17468.1
Unique NamemRNA_M-pyrifera_M_contig73709.17468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73709.17468.1 vs. uniprot
Match: A0A517PM68_9PLAN (Internalin-A n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PM68_9PLAN)

HSP 1 Score: 306 bits (785), Expect = 7.720e-99
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 AIRERPWDMQAIQKFVSWLDECDPPRAELVRMQMEIISPDFDESRRGELEQKISDLINQNRIRWTRSLDPLGWRAELAMFEIGLINWLYIQGLTDDQAEILQKTPEIRALELDGPQLSESGYQCVCSMSQLDELIIKAERLTEQELEYLEQLP 459
            AIRERPWDMQAIQKFVSWLDECDPPRAELVRMQMEIISPDFDESRRGELEQKISDLINQNRIRWTRSLDPLGWRAELAMFEIGLINWLYIQGLTDDQAEILQKTPEIRALELDGPQLSESGYQCVCSMSQLDELIIKAERLTEQELEYLEQLP
Sbjct:   25 AIRERPWDMQAIQKFVSWLDECDPPRAELVRMQMEIISPDFDESRRGELEQKISDLINQNRIRWTRSLDPLGWRAELAMFEIGLINWLYIQGLTDDQAEILQKTPEIRALELDGPQLSESGYQCVCSMSQLDELIIKAERLTEQELEYLEQLP 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73709.17468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517PM68_9PLAN7.720e-99100.00Internalin-A n=1 Tax=Gimesia chilikensis TaxID=260... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73709contigM-pyrifera_M_contig73709:364..822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.582502-UTR-M-pyrifera_M_contig73709:363..3871622816634.582502-UTR-M-pyrifera_M_contig73709:363..387Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73709 364..387 +
1692278089.8015256-UTR-M-pyrifera_M_contig73709:363..3871692278089.8015256-UTR-M-pyrifera_M_contig73709:363..387Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73709 364..387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.5941322-CDS-M-pyrifera_M_contig73709:387..8221622816634.5941322-CDS-M-pyrifera_M_contig73709:387..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73709 388..822 +
1692278089.812744-CDS-M-pyrifera_M_contig73709:387..8221692278089.812744-CDS-M-pyrifera_M_contig73709:387..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73709 388..822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73709.17468.1prot_M-pyrifera_M_contig73709.17468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73709 388..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73709.17468.1

>prot_M-pyrifera_M_contig73709.17468.1 ID=prot_M-pyrifera_M_contig73709.17468.1|Name=mRNA_M-pyrifera_M_contig73709.17468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MQAIQKFVSWLDECDPPRAELVRMQMEIISPDFDESRRGELEQKISDLIN
QNRIRWTRSLDPLGWRAELAMFEIGLINWLYIQGLTDDQAEILQKTPEIR
ALELDGPQLSESGYQCVCSMSQLDELIIKAERLTEQELEYLEQLP
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mRNA from alignment at M-pyrifera_M_contig73709:364..822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73709.17468.1 ID=mRNA_M-pyrifera_M_contig73709.17468.1|Name=mRNA_M-pyrifera_M_contig73709.17468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig73709:364..822+ (Macrocystis pyrifera P11B4 male)
GCAATCCGTGAACGCCCCTGGGATATGCAGGCGATCCAGAAGTTTGTGAG
CTGGCTGGATGAATGTGACCCTCCCCGTGCCGAACTGGTACGTATGCAAA
TGGAGATCATCTCGCCTGATTTCGATGAATCACGACGAGGAGAATTGGAA
CAAAAAATATCGGATTTGATTAATCAAAACAGGATCAGGTGGACTCGGTC
TCTGGACCCGCTGGGATGGCGGGCAGAACTAGCCATGTTTGAAATCGGAT
TGATCAATTGGTTGTATATCCAGGGCCTCACTGATGACCAGGCAGAAATC
CTGCAAAAGACGCCTGAGATACGAGCACTGGAGTTGGATGGACCTCAACT
ATCTGAATCCGGTTATCAGTGTGTTTGCAGCATGTCCCAACTGGATGAGC
TGATAATCAAAGCGGAACGGTTGACTGAGCAGGAACTGGAGTATCTGGAA
CAACTCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73709:364..822+

>mRNA_M-pyrifera_M_contig73709.17468.1 ID=mRNA_M-pyrifera_M_contig73709.17468.1|Name=mRNA_M-pyrifera_M_contig73709.17468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig73709:364..822+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCGATCCAGAAGTTTGTGAGCTGGCTGGATGAATGTGACCCTCC
CCGTGCCGAACTGGTACGTATGCAAATGGAGATCATCTCGCCTGATTTCG
ATGAATCACGACGAGGAGAATTGGAACAAAAAATATCGGATTTGATTAAT
CAAAACAGGATCAGGTGGACTCGGTCTCTGGACCCGCTGGGATGGCGGGC
AGAACTAGCCATGTTTGAAATCGGATTGATCAATTGGTTGTATATCCAGG
GCCTCACTGATGACCAGGCAGAAATCCTGCAAAAGACGCCTGAGATACGA
GCACTGGAGTTGGATGGACCTCAACTATCTGAATCCGGTTATCAGTGTGT
TTGCAGCATGTCCCAACTGGATGAGCTGATAATCAAAGCGGAACGGTTGA
CTGAGCAGGAACTGGAGTATCTGGAACAACTCCCTATGCAGGCGATCCAG
AAGTTTGTGAGCTGGCTGGATGAATGTGACCCTCCCCGTGCCGAACTGGT
ACGTATGCAAATGGAGATCATCTCGCCTGATTTCGATGAATCACGACGAG
GAGAATTGGAACAAAAAATATCGGATTTGATTAATCAAAACAGGATCAGG
TGGACTCGGTCTCTGGACCCGCTGGGATGGCGGGCAGAACTAGCCATGTT
TGAAATCGGATTGATCAATTGGTTGTATATCCAGGGCCTCACTGATGACC
AGGCAGAAATCCTGCAAAAGACGCCTGAGATACGAGCACTGGAGTTGGAT
GGACCTCAACTATCTGAATCCGGTTATCAGTGTGTTTGCAGCATGTCCCA
ACTGGATGAGCTGATAATCAAAGCGGAACGGTTGACTGAGCAGGAACTGG
AGTATCTGGAACAACTCCCT
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