mRNA_M-pyrifera_M_contig73454.17415.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73454.17415.1
Unique NamemRNA_M-pyrifera_M_contig73454.17415.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.020e-41
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQ DVL+R V
Sbjct:  341 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCV 414
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.720e-40
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQ DVL+R V
Sbjct:  702 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCV 775
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.050e-29
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KS+EALKRCDNDPHVITAVAR F  DRKY KARKWFNRA+ LD + GDAWAA++AFELQQGT  +QADV+ R V
Sbjct:  702 KSVEALKRCDNDPHVITAVARLFEKDRKYPKARKWFNRAVALDADNGDAWAAFFAFELQQGTAEQQADVIARCV 775
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A438KFT4_VITVI (Protein STABILIZED 1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KFT4_VITVI)

HSP 1 Score: 105 bits (262), Expect = 2.780e-27
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KSL+ALK+CD+DPHVI AVA+ FW DRK  KAR W NRA+TL P++GD WA YY FE+Q G+E  Q DVL R V
Sbjct:   39 KSLDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFEVQHGSEENQKDVLRRCV 112
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A2P6NJY6_9EUKA (PRP1_N domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJY6_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 8.250e-27
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KS++ALKRCDNDP VI AVA+ FWADRKY K R WFNRA+TL+P++GDAWA +Y FE+Q GTE  Q ++L R V
Sbjct:  862 KSVDALKRCDNDPFVIVAVAKVFWADRKYEKTRTWFNRAVTLNPDLGDAWAYFYKFEIQHGTEEHQQELLKRCV 935
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A7C9DKB5_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DKB5_OPUST)

HSP 1 Score: 105 bits (262), Expect = 1.070e-26
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNR 216
            KS +ALK+CD+DPHVI AVA+ FW DRK  KAR W NRA+TL P++GD WA YY FELQ GTE  Q DVL R
Sbjct:  141 KSSDALKKCDHDPHVIAAVAKLFWHDRKVDKARNWLNRAVTLAPDIGDFWALYYKFELQHGTEENQKDVLKR 212
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A7S2C6C9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2C6C9_9DINO)

HSP 1 Score: 106 bits (264), Expect = 1.810e-26
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KS++ALK+C+ND HVI AVA+ FW D K AKARKWFNRA+TL+P +GDAW AY AFEL+ GT  EQ +V+ + V
Sbjct:  111 KSVDALKKCENDAHVIVAVAKLFWRDAKNAKARKWFNRAVTLNPRLGDAWGAYLAFELEHGTAHEQREVIRKCV 184
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A7S3XY73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY73_HETAK)

HSP 1 Score: 110 bits (274), Expect = 2.070e-26
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            +S+EALKRCDNDPHV+ AVAR F +DRK+AKARKWF RA+ L P +GDAWA +YAFEL+QGT  EQ  VL+R V
Sbjct:  606 RSVEALKRCDNDPHVVLAVARLFASDRKHAKARKWFERAVALRPGLGDAWARFYAFELRQGTPEEQRAVLDRCV 679
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BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A2R6QX31_ACTCC (Uncharacterized protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QX31_ACTCC)

HSP 1 Score: 107 bits (266), Expect = 3.200e-26
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KS++ALK+CD+DPHVI AVA+ FW DRK  KAR W NRA+TL P++GD WA YY FELQ GTE  Q DVL R +
Sbjct:  217 KSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARNWLNRAVTLAPDIGDFWALYYKFELQHGTEDNQKDVLKRCI 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Match: A0A7S3RVD0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RVD0_9SPIT)

HSP 1 Score: 104 bits (259), Expect = 3.410e-26
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQADVLNRFV 222
            KS++ALK+C+ND HVI AVA+ FW D K AKARKWFNRA+TL+P +GDAW AY AFE++ GT  EQ +V+ + V
Sbjct:  113 KSVDALKKCENDAHVIIAVAKLFWKDNKTAKARKWFNRAVTLNPRLGDAWGAYLAFEMEFGTAHEQREVIRKCV 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73454.17415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH2_9PHAE1.020e-4195.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI1.720e-4095.95PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YM25_9STRA3.050e-2975.68PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A438KFT4_VITVI2.780e-2764.86Protein STABILIZED 1 n=1 Tax=Vitis vinifera TaxID=... [more]
A0A2P6NJY6_9EUKA8.250e-2766.22PRP1_N domain-containing protein n=1 Tax=Planoprot... [more]
A0A7C9DKB5_OPUST1.070e-2666.67Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A7S2C6C9_9DINO1.810e-2663.51Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S3XY73_HETAK2.070e-2668.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R6QX31_ACTCC3.200e-2664.86Uncharacterized protein n=1 Tax=Actinidia chinensi... [more]
A0A7S3RVD0_9SPIT3.410e-2662.16Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73454contigM-pyrifera_M_contig73454:750..971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.2e-34
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.7949-CDS-M-pyrifera_M_contig73454:749..9711622816631.7949-CDS-M-pyrifera_M_contig73454:749..971Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73454 750..971 +
1692278088.3036013-CDS-M-pyrifera_M_contig73454:749..9711692278088.3036013-CDS-M-pyrifera_M_contig73454:749..971Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73454 750..971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73454.17415.1prot_M-pyrifera_M_contig73454.17415.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73454 750..971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73454.17415.1

>prot_M-pyrifera_M_contig73454.17415.1 ID=prot_M-pyrifera_M_contig73454.17415.1|Name=mRNA_M-pyrifera_M_contig73454.17415.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
KSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAW
AAYYAFELQQGTEVEQADVLNRFV
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mRNA from alignment at M-pyrifera_M_contig73454:750..971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73454.17415.1 ID=mRNA_M-pyrifera_M_contig73454.17415.1|Name=mRNA_M-pyrifera_M_contig73454.17415.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig73454:750..971+ (Macrocystis pyrifera P11B4 male)
AAGTCGCTGGAGGCGCTGAAGAGGTGCGACAACGACCCGCACGTGATCAC
CGCGGTGGCGAGACGGTTCTGGGCCGACCGGAAGTACGCCAAGGCCCGCA
AGTGGTTCAACCGCGCCATCACCCTGGACCCCAACATGGGAGACGCGTGG
GCGGCGTACTACGCGTTCGAGTTGCAGCAGGGGACGGAGGTGGAGCAGGC
GGATGTTCTGAATAGGTTCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73454:750..971+

>mRNA_M-pyrifera_M_contig73454.17415.1 ID=mRNA_M-pyrifera_M_contig73454.17415.1|Name=mRNA_M-pyrifera_M_contig73454.17415.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig73454:750..971+ (Macrocystis pyrifera P11B4 male)
AAGTCGCTGGAGGCGCTGAAGAGGTGCGACAACGACCCGCACGTGATCAC
CGCGGTGGCGAGACGGTTCTGGGCCGACCGGAAGTACGCCAAGGCCCGCA
AGTGGTTCAACCGCGCCATCACCCTGGACCCCAACATGGGAGACGCGTGG
GCGGCGTACTACGCGTTCGAGTTGCAGCAGGGGACGGAGGTGGAGCAGGC
GGATGTTCTGAATAGGTTCGTAAAGTCGCTGGAGGCGCTGAAGAGGTGCG
ACAACGACCCGCACGTGATCACCGCGGTGGCGAGACGGTTCTGGGCCGAC
CGGAAGTACGCCAAGGCCCGCAAGTGGTTCAACCGCGCCATCACCCTGGA
CCCCAACATGGGAGACGCGTGGGCGGCGTACTACGCGTTCGAGTTGCAGC
AGGGGACGGAGGTGGAGCAGGCGGATGTTCTGAATAGGTTCGTA
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