mRNA_M-pyrifera_M_contig7345.17414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7345.17414.1
Unique NamemRNA_M-pyrifera_M_contig7345.17414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.830e-12
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   43 RVYFYHVNGCLFLRTAVCRGYQFKVGAYIQVNCPAISATQWHPFSLFPVPG 195
            R  F  V     +R  +  GYQF VG+YIQVNCPAISA +WHPFS+FPVPG
Sbjct:  435 RAVFRPVGRATLVRFDLPPGYQFNVGSYIQVNCPAISAKEWHPFSMFPVPG 485
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.860e-12
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:  100 GYQFKVGAYIQVNCPAISATQWHPFSLFPVPG 195
            GYQFKVG+YIQVNCPAISA +WHPFS+FPVPG
Sbjct:  221 GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPG 252
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.060e-11
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   13 TAQRKTLDSSRVYFYHVNGCLFLRTAVCRGYQFKVGAYIQVNCPAISATQWHPFSLFPVPG 195
            T +   L SS VY     G L +R  +  GYQ+K GAY+QVNCPAIS ++WHPFSLFPVPG
Sbjct:  438 TTKMTFLLSSPVYKPVGRGTL-VRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPG 497
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.060e-11
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   13 TAQRKTLDSSRVYFYHVNGCLFLRTAVCRGYQFKVGAYIQVNCPAISATQWHPFSLFPVPG 195
            T +   L SS VY     G L +R  +  GYQ+K GAY+QVNCPAIS ++WHPFSLFPVPG
Sbjct:  450 TTKMTFLLSSPVYKPVGRGTL-VRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPG 509
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.370e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  100 GYQFKVGAYIQVNCPAISATQWHPFSLFPVPG 195
            GY+++ GAY+QVNCPAIS ++WHPFSLFPVPG
Sbjct:    5 GYKYQPGAYVQVNCPAISVSEWHPFSLFPVPG 36
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BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Match: A0A8N5HSZ9_GEOFO (NADPH oxidase 1 n=1 Tax=Geospiza fortis TaxID=48883 RepID=A0A8N5HSZ9_GEOFO)

HSP 1 Score: 48.1 bits (113), Expect = 9.310e-5
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   97 RGYQFKVGAYIQVNCPAISATQWHPFSLFPVP 192
            +G++ +VG YI VNCPAISA +WHPF+L   P
Sbjct:  385 KGFRMEVGQYIFVNCPAISALEWHPFTLTSAP 416
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7345.17414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JEC1_9PHAE5.830e-1260.78FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
D7G8C4_ECTSI5.860e-1287.50Putative respiratory burst oxidase homolog n=1 Tax... [more]
D7G8C8_ECTSI2.060e-1157.38Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JHI2_9PHAE2.060e-1157.38FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8D0_ECTSI2.370e-1175.00Putative respiratory burst oxidase homolog protein... [more]
A0A8N5HSZ9_GEOFO9.310e-559.38NADPH oxidase 1 n=1 Tax=Geospiza fortis TaxID=4888... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7345contigM-pyrifera_M_contig7345:399..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D7G8C4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.759897-CDS-M-pyrifera_M_contig7345:398..5931622816631.759897-CDS-M-pyrifera_M_contig7345:398..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7345 399..593 -
1692278088.2913694-CDS-M-pyrifera_M_contig7345:398..5931692278088.2913694-CDS-M-pyrifera_M_contig7345:398..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7345 399..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7345.17414.1prot_M-pyrifera_M_contig7345.17414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7345 399..593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7345.17414.1

>prot_M-pyrifera_M_contig7345.17414.1 ID=prot_M-pyrifera_M_contig7345.17414.1|Name=mRNA_M-pyrifera_M_contig7345.17414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MRRSTAQRKTLDSSRVYFYHVNGCLFLRTAVCRGYQFKVGAYIQVNCPAI
SATQWHPFSLFPVPG
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mRNA from alignment at M-pyrifera_M_contig7345:399..593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7345.17414.1 ID=mRNA_M-pyrifera_M_contig7345.17414.1|Name=mRNA_M-pyrifera_M_contig7345.17414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig7345:399..593- (Macrocystis pyrifera P11B4 male)
ATGAGACGAAGTACTGCACAACGAAAAACGCTTGACTCGTCCCGTGTGTA
CTTTTATCACGTCAATGGATGTTTGTTCCTCCGGACGGCCGTTTGCAGGG
GCTACCAATTCAAGGTGGGGGCCTACATCCAGGTCAACTGCCCGGCGATC
AGCGCCACGCAATGGCACCCCTTTTCCCTCTTCCCGGTCCCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7345:399..593-

>mRNA_M-pyrifera_M_contig7345.17414.1 ID=mRNA_M-pyrifera_M_contig7345.17414.1|Name=mRNA_M-pyrifera_M_contig7345.17414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig7345:399..593- (Macrocystis pyrifera P11B4 male)
ATGAGACGAAGTACTGCACAACGAAAAACGCTTGACTCGTCCCGTGTGTA
CTTTTATCACGTCAATGGATGTTTGTTCCTCCGGACGGCCGTTTGCAGGG
GCTACCAATTCAAGGTGGGGGCCTACATCCAGGTCAACTGCCCGGCGATC
AGCGCCACGCAATGGCACCCCTTTTCCCTCTTCCCGGTCCCCGGCATGAG
ACGAAGTACTGCACAACGAAAAACGCTTGACTCGTCCCGTGTGTACTTTT
ATCACGTCAATGGATGTTTGTTCCTCCGGACGGCCGTTTGCAGGGGCTAC
CAATTCAAGGTGGGGGCCTACATCCAGGTCAACTGCCCGGCGATCAGCGC
CACGCAATGGCACCCCTTTTCCCTCTTCCCGGTCCCCGGC
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