mRNA_M-pyrifera_M_contig7343.17411.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI) HSP 1 Score: 173 bits (438), Expect = 2.480e-44 Identity = 215/380 (56.58%), Postives = 231/380 (60.79%), Query Frame = 1 Query: 7 MRDVKKALAEGQSPHEGLHKG-------KGGGKISRRAEETLERAKDCISKELVWKVHFEAAQIEERLASVCAKETAAEKNAXXXXXXXXXXXXXXXXLP---------------------PSLAPAAPLTAF---------STESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSTDRGGRGQKGSAFGGGVGDRADRGSDSSEGKVEGVRRGGVVXXXXXXXXXXXXXAVGMVSEAQARDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 MRD KKAL EG+SP E + +G + RA+ET+E+AKDCISKELVWKVHFEAAQIEERLASVCAKE A XXXXXXXXXXXXXX P+ P P+T S+ SP XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX XXXXXXXXXXXXX +VSEAQAR+SLLGPCR++YAHAVLTCPHNLRWKVWLAGARMEL+AGNC HAQRLLNRAFQ +PEKSKSHVFLECXXXXXXXXXXXXXXXX RARVETKSEWK Sbjct: 278 MRDAKKALVEGKSPFEAYQQRATSDASRRGQMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIATRSLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGPANVPLTPMTPRELREKLRQPSSPSPAAGRVDLPATSSAAATADPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXLVRSEALPSSXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSEAQARNSLLGPCRSAYAHAVLTCPHNLRWKVWLAGARMELAAGNCLHAQRLLNRAFQEVPEKSKSHVFLECXXXXXXXXXXXXXXXXXXRARVETKSEWK 632
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.630e-22 Identity = 118/329 (35.87%), Postives = 137/329 (41.64%), Query Frame = 1 Query: 1 IDMRDVKKALAEGQSPHEGLH---------KGKGGGK---------ISRRAEETLERAKDCISKELVWKVHFEAAQIEERLASVCAKETAAE----------KNAXXXXXXXXXXXXXXXXLP--------PSLAPAAPLTAFSTESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSTDRGGRGQKGSAFGGGVGDRADRGSDSSEGKVEGVRRGGVVXXXXXXXXXXXXXAVGMVSEAQARDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHA 879 +DMRD KKALAEG+SP E +G+GG + RA+ET+E+AKDCISKELVWKVHFEAAQIEERLASVCAK A K A XXXXXXXXXXXXXX P+ P+ P+T XXX G+GD G GGV + VSEAQARDSLLGPCR++YAHAVLTCPHNLRWKV+L +E+ A + A Sbjct: 442 LDMRDAKKALAEGKSPFEAYQQRATSDPSTRGQGGXXXXXXXXKVVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKAIATRSLQAAVAAGAKRAPTXXXXXXXXXXXXXXXXXXXXXSSGPANVPSTPMTPRELREKLRQPPSPSPMAGRVDRSPTSSADAAADPAGVPLAAAXXXTIGGGSGGVVEVGCEAETRIDLVRSEALPSSSAGQTAXXXXXXXXXXSKGLGD-------------SGAEAGGVAVAHVDDGGGGSGGDI--VSEAQARDSLLGPCRSAYAHAVLTCPHNLRWKVFLESVLLEIRANDWQRA 755
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA) HSP 1 Score: 101 bits (252), Expect = 7.550e-20 Identity = 57/96 (59.38%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 748 RDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 R LLG CR Y A LT P NLRWKVWLAGAR EL AG A+ LL RAF+ +P+KSK+HVFLEC XXXXXX L +ARVE + EWK Sbjct: 929 RGELLGRCRQYYVDAALTAPSNLRWKVWLAGARTELGAGRVDVARALLRRAFREVPDKSKAHVFLECARLEEYVGXXXXXXSVLAQARVEARGEWK 1024
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A4D9D155_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D155_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.460e-14 Identity = 61/96 (63.54%), Postives = 66/96 (68.75%), Query Frame = 1 Query: 748 RDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 R LLG CR Y A LT P NLRWKVWLAGAR EL AG A+ LL RAF +P+KSK+H XXXXXXXXXXXXXXXX ARVE + EWK Sbjct: 1279 RGELLGRCRQCYVDAALTAPSNLRWKVWLAGARTELGAGRVDFARALLRRAFCEVPDKSKAHXXXXXXXXXXXXXXXXXXXXXXXXARVEARGEWK 1374
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 8.170e-14 Identity = 41/89 (46.07%), Postives = 49/89 (55.06%), Query Frame = 1 Query: 769 CRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 CR + LTCP NL WKVWLAG RMELSAGN A++L RA +PEK K+ V +EC L +AR E S+WK Sbjct: 983 CRERFGMTALTCPPNLCWKVWLAGGRMELSAGNTEQARKLFLRAHNVVPEKGKAAVVMECARLEEFVGETEVARAVLRKARSEVGSDWK 1071
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A7S0GLS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLS1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.230e-13 Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 760 LGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 L CR S+ A+L+CP NL WKVWLA RMEL+AG + A++L RA+ +P+K +S V LEC L +AR + S+WK Sbjct: 200 LQSCRRSFVRAILSCPPNLCWKVWLASGRMELTAGRTSIARKLFMRAYNVVPDKGRSTVLLECARLEEFVDDVKLARAILCKARNDNDSDWK 291
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A1Z5KBR2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBR2_FISSO) HSP 1 Score: 73.2 bits (178), Expect = 2.130e-10 Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 1 Query: 730 VSEAQARDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 V + Q D LL P R + +LTCP NLRW+VWLA AR EL G A++L +A A+PEK +S LEC L + R E +WK Sbjct: 946 VDDPQFND-LLDPARRRLSLTILTCPSNLRWRVWLAAARSELGFGQNERARKLFLKAHNAVPEKGRSSTLLECARLEEFLGDTDLARAILCKGRSEYAHDWK 1046
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: B8C4M3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M3_THAPS) HSP 1 Score: 72.4 bits (176), Expect = 3.900e-10 Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 760 LGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERAR-VETKSEWK 1035 LGP R SYA A++ CP NL WK+WLA R E + GN A+ L RA ++ EK +S V LEC XXXXXXXXXX L +AR + S+WK Sbjct: 1196 LGPTRRSYAKAIMMCPQNLTWKIWLASGRTESACGNTDEARSLFLRASDSVSEKGRSTVLLECARLEXXXXXXXXXXAILCKARNIFGNSDWK 1288
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A1Z5JMR3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMR3_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 5.070e-10 Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 1 Query: 730 VSEAQARDSLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 V + Q D +L P R + +LTCP NLRW+VWLA AR EL G A++L +A ++PEK +S LEC L + R E +WK Sbjct: 947 VDDPQFND-MLNPARRRLSLTILTCPSNLRWRVWLAAARSELGFGQNDRARKLFLKAHNSVPEKGRSSTLLECARLEEFLGDTELARAILCKGRCEYAHDWK 1047
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Match: A0A7S2Y4L6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4L6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 7.490e-10 Identity = 39/94 (41.49%), Postives = 45/94 (47.87%), Query Frame = 1 Query: 754 SLLGPCRASYAHAVLTCPHNLRWKVWLAGARMELSAGNCTHAQRLLNRAFQAIPEKSKSHVFLECXXXXXXXXXXXXXXXXLERARVETKSEWK 1035 S L P R +LTCP NLRWKVWLA RMEL GN A L RA + +KSKS L+C L +AR S+WK Sbjct: 281 SYLTPVRRRLVLTILTCPQNLRWKVWLAAGRMELVVGNSEMAHSLFQRAHFCVQQKSKSATLLDCARLAEFNGDIKLARGILTKARSFYCSDWK 374 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7343.17411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7343.17411.1 >prot_M-pyrifera_M_contig7343.17411.1 ID=prot_M-pyrifera_M_contig7343.17411.1|Name=mRNA_M-pyrifera_M_contig7343.17411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=344bp MRDVKKALAEGQSPHEGLHKGKGGGKISRRAEETLERAKDCISKELVWKVback to top mRNA from alignment at M-pyrifera_M_contig7343:525..4838+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7343.17411.1 ID=mRNA_M-pyrifera_M_contig7343.17411.1|Name=mRNA_M-pyrifera_M_contig7343.17411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4314bp|location=Sequence derived from alignment at M-pyrifera_M_contig7343:525..4838+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7343:525..4838+ >mRNA_M-pyrifera_M_contig7343.17411.1 ID=mRNA_M-pyrifera_M_contig7343.17411.1|Name=mRNA_M-pyrifera_M_contig7343.17411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2064bp|location=Sequence derived from alignment at M-pyrifera_M_contig7343:525..4838+ (Macrocystis pyrifera P11B4 male)back to top |