mRNA_M-pyrifera_M_contig72715.17274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72715.17274.1
Unique NamemRNA_M-pyrifera_M_contig72715.17274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Match: A0A0L0DQI3_THETB (Fibronectin type-III domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DQI3_THETB)

HSP 1 Score: 61.2 bits (147), Expect = 4.440e-8
Identity = 53/159 (33.33%), Postives = 74/159 (46.54%), Query Frame = 1 
Query:    1 CAPCPTGGVC-GGLAEEGVTAQDGYWRVPWTKDGVGFVACTEAIHCTGHEGCAPGRAGVMCEQCAINYYPS--AGACVPCGPRDLVITRFFFLALFVAVVLSILL------IRAWRSRL----SSSSREVIIS-KIILTHLQTVTVVGAVQLQWPKTAS 435
            C PCP GG C GGLA     A  GY+ V    DG     C  A  C    GCA G +GV+C +CA  YY +   G CV C P+         LA+ +   L +L       +  W        +S +R+V  S  + L  LQ + V+ ++ L+WP++ S
Sbjct:  427 CEPCPPGGECSGGLARP--RAVPGYFDV--NGDGTVLAKCPRATACLAGGGCAVGYSGVLCSECADEYYVNLATGGCVRC-PKSSAAVFGSALAVLILGTLGVLAGIFHLAVFPWEVTAEGVSTSRARKVPHSISVGLVFLQILGVLSSIPLRWPESVS 580
[Close]
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Match: A0A8J8NI59_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NI59_HALGN)

HSP 1 Score: 58.2 bits (139), Expect = 4.190e-7
Identity = 43/157 (27.39%), Postives = 67/157 (42.68%), Query Frame = 1 
Query:    1 CAPCPT--GGVCGGLAEEGVTAQDGYWRVPWTKDGVGFVACTEAIHCTGHEG-----CAPGRAGVMCEQCAINYYPSAGA--CVPCGPRDLVITRFFFLALFVAVVLSILLIRAWRSRLSSSSREVIISKIILTHLQTVTVVGAVQLQWPKTASGFF 444
            C  CP+      GG A   +  + GYWR     D   F+ C   I C G        C  G  G++   CA+ Y  S  +  C  C  R   I     + + VA+ L++L++    S L   +   +  +++L HLQ +T+ G+  L WP     F+
Sbjct:   56 CRKCPSLEAECFGGSA---IFPKSGYWRSSNESDN--FIKCLNPIACLGGSNSNASQCQEGYQGILFSDCALGYSKSLASFKCSNCPSRASNIIILIVVIIGVALFLTLLIVSNLNSALKDKNYLAVFLRVLLNHLQVLTLSGSFDLNWPSMLLSFY 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Match: J9IXA4_9SPIT (VSP domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IXA4_9SPIT)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-6
Identity = 47/158 (29.75%), Postives = 67/158 (42.41%), Query Frame = 1 
Query:    1 CAPCPTG-GVCGGLAEEGVTAQDGYWRVPWTKDGVGFVACTEAIHCTGH--------EGCAPGRAGVMCEQCAINYYPSAG-ACVPCGPRDLVITRFFFLALFVAVVLSILLIRAWRSRLSSSSREVIISKIILTHLQTVTVVGAVQLQWPKTASGFF 444
            C  CP    +C G +  G   Q GYWR     D   F+ C E   C G           C  G  G MC  C   Y  S   AC  C    + I R   + + V +V+S L+     S    ++  V  SKI++ HLQ +++  A + +WP+  + FF
Sbjct: 3814 CKVCPAEKAICQGGSNIG--PQPGYWRKNNETDN--FIECFEKTSCLGMLPPANNPVGDCLEGYYGAMCTACMPGYSRSGDYACSKCPDPFINILRISGIMVIVIIVVSYLVKSTINSATKKNTHSVY-SKILMNHLQLLSICAAFKFEWPEQVTSFF 3966
[Close]
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Match: A0A8J8P9N1_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P9N1_HALGN)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-6
Identity = 48/155 (30.97%), Postives = 67/155 (43.23%), Query Frame = 1 
Query:   25 VCGGLAEEGVTAQDGYWRVPWTKDGVGFVACTEAIHCTGHE---------GCAPGRAGVMCEQCAINYYPSAG--ACVPCGPRDLVITRFFFLALFVAVVLSILLIRAWRSRLSSSSREV----IISKIILTHLQTVTVVGAVQLQWPKTASGFF 444
            VC G  E  V A  GYWR     D   F  C     C G+E          CAPG  GV+C  C   Y  S G   C+ C  +    +  F L  F+ + +        RS L SS+++     +  +I++ HLQ VT++G+    WP+    FF
Sbjct: 1790 VCKGGNE--VYALSGYWRSSRQSDE--FYQCLYPQACIGYEDGMASSKIEACAPGYQGVLCAGCESGYSLSQGNRKCLKCPSKT---SNAFILTAFL-IAIXXXXXXXXRSNLRSSTKDKNYLPVFFRILVNHLQIVTLLGSFDFDWPQEFVTFF 1936
[Close]
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Match: A0A8J8P946_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P946_HALGN)

HSP 1 Score: 53.1 bits (126), Expect = 3.040e-5
Identity = 39/135 (28.89%), Postives = 54/135 (40.00%), Query Frame = 1 
Query:   61 QDGYWRVPWTKDGVGFVACTEAIHCTGH-----EGCAPGRAGVMCEQCAINYYPSAGA--CVPCGPRDLVITRFFFLALFVAVVLSILLIRAWRSRLSSSSREVIISKIILTHLQTVTVVGAVQLQWPKTASGFF 444
            Q GYWR     D   F+ C   I C G      + C  G  GV+C  CA  Y  S  +  C  C   +  I           + L IL+I    S L   +   +  +++L HLQ +T+ G   L WP     F+
Sbjct: 2133 QAGYWRSSNYSDQ--FIKCLNPIACVGKNIDIKQQCLEGYQGVLCSDCAQGYSKSVASFKCSECPSMESNIIIIAAXXXXXGLFLIILIISNLNSALKEKNYLPVFLRVLLNHLQILTLSGTFDLNWPTPLLNFY 2265
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72715.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0L0DQI3_THETB4.440e-833.33Fibronectin type-III domain-containing protein n=1... [more]
A0A8J8NI59_HALGN4.190e-727.39Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
J9IXA4_9SPIT1.940e-629.75VSP domain containing protein n=1 Tax=Oxytricha tr... [more]
A0A8J8P9N1_HALGN2.590e-630.97Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A8J8P946_HALGN3.040e-528.89Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72715contigM-pyrifera_M_contig72715:518..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.9e-09
Seed eggNOG ortholog529818.AMSG_12104T0
KEGG koko:K05692,ko:K10355,ko:K10798
KEGG Pathwayko03410,ko04015,ko04145,ko04210,ko04212,ko04214,ko04217,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map03410,map04015,map04145,map04210,map04212,map04214,map04217,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0006810,GO:0006897,GO:0006909,GO:0006996,GO:0007010,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016192,GO:0017022,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0051179,GO:0051234,GO:0071840,GO:0098657
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
EC2.4.2.30
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03021,ko03029,ko03032,ko03036,ko03400,ko04147,ko04812
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.1879385-CDS-M-pyrifera_M_contig72715:517..6571622816624.1879385-CDS-M-pyrifera_M_contig72715:517..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72715 518..657 +
1692278083.6977062-CDS-M-pyrifera_M_contig72715:517..6571692278083.6977062-CDS-M-pyrifera_M_contig72715:517..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72715 518..657 +
1622816624.2000191-CDS-M-pyrifera_M_contig72715:792..10991622816624.2000191-CDS-M-pyrifera_M_contig72715:792..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72715 793..1099 +
1692278083.7156293-CDS-M-pyrifera_M_contig72715:792..10991692278083.7156293-CDS-M-pyrifera_M_contig72715:792..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72715 793..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72715.17274.1prot_M-pyrifera_M_contig72715.17274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72715 518..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72715.17274.1

>prot_M-pyrifera_M_contig72715.17274.1 ID=prot_M-pyrifera_M_contig72715.17274.1|Name=mRNA_M-pyrifera_M_contig72715.17274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
CAPCPTGGVCGGLAEEGVTAQDGYWRVPWTKDGVGFVACTEAIHCTGHEG
CAPGRAGVMCEQCAINYYPSAGACVPCGPRDLVITRFFFLALFVAVVLSI
LLIRAWRSRLSSSSREVIISKIILTHLQTVTVVGAVQLQWPKTASGFFT
back to top

mRNA from alignment at M-pyrifera_M_contig72715:518..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72715.17274.1 ID=mRNA_M-pyrifera_M_contig72715.17274.1|Name=mRNA_M-pyrifera_M_contig72715.17274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig72715:518..1099+ (Macrocystis pyrifera P11B4 male)
TGTGCACCATGTCCAACTGGTGGGGTGTGTGGAGGGTTGGCGGAAGAAGG
AGTGACAGCACAAGACGGGTACTGGAGGGTGCCTTGGACCAAAGATGGTG
TTGGTTTTGTGGCATGCACTGAAGCAATTCATTGCACAGGGTATCCAAAA
TCTCCTTCTTCCTCAGCCTTCACTAAGAATGCAACGGACAATACATCAGT
GGTGATGGAATGGCTTATCACAGATGAAGAAGATCGACCAGCAGCTGTCA
CTGGCTTCACAATCTCTCCATCAAGCCATGAAGGTTGTGCACCAGGTCGT
GCTGGGGTCATGTGTGAACAATGTGCTATCAACTACTACCCATCAGCAGG
TGCATGTGTCCCTTGTGGTCCACGTGATCTTGTCATTACGCGGTTTTTCT
TCCTTGCACTCTTCGTAGCCGTAGTGCTTTCCATCCTGCTCATTCGTGCA
TGGCGATCTCGTCTTTCATCCTCTTCTCGCGAAGTGATCATCAGCAAAAT
CATCCTAACTCATCTTCAAACAGTCACAGTCGTTGGAGCAGTCCAATTAC
AATGGCCAAAGACTGCCAGTGGCTTCTTCACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72715:518..1099+

>mRNA_M-pyrifera_M_contig72715.17274.1 ID=mRNA_M-pyrifera_M_contig72715.17274.1|Name=mRNA_M-pyrifera_M_contig72715.17274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig72715:518..1099+ (Macrocystis pyrifera P11B4 male)
TGTGCACCATGTCCAACTGGTGGGGTGTGTGGAGGGTTGGCGGAAGAAGG
AGTGACAGCACAAGACGGGTACTGGAGGGTGCCTTGGACCAAAGATGGTG
TTGGTTTTGTGGCATGCACTGAAGCAATTCATTGCACAGGTGTGCACCAT
GTCCAACTGGTGGGGTGTGTGGAGGGTTGGCGGAAGAAGGAGTGACAGCA
CAAGACGGGTACTGGAGGGTGCCTTGGACCAAAGATGGTGTTGGTTTTGT
GGCATGCACTGAAGCAATTCATTGCACAGGCCATGAAGGTTGTGCACCAG
GTCGTGCTGGGGTCATGTGTGAACAATGTGCTATCAACTACTACCCATCA
GCAGGTGCATGTGTCCCTTGTGGTCCACGTGATCTTGTCATTACGCGGTT
TTTCTTCCTTGCACTCTTCGTAGCCGTAGTGCTTTCCATCCTGCTCATTC
GTGCATGGCGATCTCGTCTTTCATCCTCTTCTCGCGAAGTGATCATCAGC
AAAATCATCCTAACTCATCTTCAAACAGTCACAGTCGTTGGAGCAGTCCA
ATTACAATGGCCAAAGACTGCCAGTGGCTTCTTCACTCCATGAAGGTTGT
GCACCAGGTCGTGCTGGGGTCATGTGTGAACAATGTGCTATCAACTACTA
CCCATCAGCAGGTGCATGTGTCCCTTGTGGTCCACGTGATCTTGTCATTA
CGCGGTTTTTCTTCCTTGCACTCTTCGTAGCCGTAGTGCTTTCCATCCTG
CTCATTCGTGCATGGCGATCTCGTCTTTCATCCTCTTCTCGCGAAGTGAT
CATCAGCAAAATCATCCTAACTCATCTTCAAACAGTCACAGTCGTTGGAG
CAGTCCAATTACAATGGCCAAAGACTGCCAGTGGCTTCTTCACT
back to top