mRNA_M-pyrifera_M_contig727.17269.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 301 bits (770), Expect = 3.580e-103 Identity = 150/157 (95.54%), Postives = 152/157 (96.82%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAH-GDAGFGSKSS 468 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVD DDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMD +H GD+ FGSKSS Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 276 bits (707), Expect = 1.400e-93 Identity = 138/156 (88.46%), Postives = 147/156 (94.23%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKV-AHGDAGFGSKS 465 MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV D+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKPL LMDKV A+ DAGFGSKS Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 236 bits (603), Expect = 8.640e-78 Identity = 112/154 (72.73%), Postives = 134/154 (87.01%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDAGFGSK 462 MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRRYASLFFIVGVG D +ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+ MDK+A+ + S+ Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVGAD--EENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 227 bits (578), Expect = 5.560e-74 Identity = 105/144 (72.92%), Postives = 128/144 (88.89%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435 I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRRYASLFFIVG ++D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+K + Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 225 bits (573), Expect = 3.100e-73 Identity = 106/144 (73.61%), Postives = 127/144 (88.19%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435 IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRRYASLFFIVGV D+D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+K + Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 224 bits (572), Expect = 8.850e-73 Identity = 111/154 (72.08%), Postives = 132/154 (85.71%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDAGFGSK 462 M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVG+ KD+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP++LM+K A D+ F SK Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 223 bits (567), Expect = 2.630e-72 Identity = 104/154 (67.53%), Postives = 130/154 (84.42%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDAGFGSK 462 MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRRYASLFF+V V D ++ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG I E N+ N+LKPL LMDK+A + G S+ Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.870e-72 Identity = 104/145 (71.72%), Postives = 127/145 (87.59%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435 MIKFVLMVNK GQTR+SSYY+W+ I ER ALEAE++R+C +R+E QCSF E RGYK++YRRYASLFFIVGV D+D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++D ++ Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.930e-70 Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDK 429 MIKFVLMVNK GQTR++ YYD++ I ERVALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVGV D D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+ LM+K Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 217 bits (552), Expect = 8.590e-70 Identity = 106/166 (63.86%), Postives = 128/166 (77.11%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDKDD------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDAGFGSK 462 MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRRYASLFFIVGV D ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG+I + N+ N+LKP+ LM+K + + S+ Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSR 166 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig727.17269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig727.17269.1 >prot_M-pyrifera_M_contig727.17269.1 ID=prot_M-pyrifera_M_contig727.17269.1|Name=mRNA_M-pyrifera_M_contig727.17269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFback to top mRNA from alignment at M-pyrifera_M_contig727:30587..31937+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig727.17269.1 ID=mRNA_M-pyrifera_M_contig727.17269.1|Name=mRNA_M-pyrifera_M_contig727.17269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1351bp|location=Sequence derived from alignment at M-pyrifera_M_contig727:30587..31937+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig727:30587..31937+ >mRNA_M-pyrifera_M_contig727.17269.1 ID=mRNA_M-pyrifera_M_contig727.17269.1|Name=mRNA_M-pyrifera_M_contig727.17269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig727:30587..31937+ (Macrocystis pyrifera P11B4 male)back to top |