mRNA_M-pyrifera_M_contig72699.17266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72699.17266.1
Unique NamemRNA_M-pyrifera_M_contig72699.17266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72699.17266.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.070e-31
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 HLAGIFMGYLMSWGMLGRLSTPILCGASVILMLQHSKGWARNMPDFSLLLQGWAGGDSGRVARARRLSTSFVAHV 225
            HL+GIFMGYLM+WG LG LS PIL G SVI MLQHSK WAR MPDFSLLLQ WAGGD+GRVARARR+  +F AHV
Sbjct:  378 HLSGIFMGYLMAWGFLGGLSIPILAGISVIFMLQHSKAWARRMPDFSLLLQSWAGGDAGRVARARRMGYAFAAHV 452
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72699.17266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N4_ECTSI1.070e-3177.33Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72699contigM-pyrifera_M_contig72699:509..736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D7G3N4
KEGG koko:K09651
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size228
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816623.1999826-UTR-M-pyrifera_M_contig72699:508..5261622816623.1999826-UTR-M-pyrifera_M_contig72699:508..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72699 509..526 +
1692278082.9214377-UTR-M-pyrifera_M_contig72699:508..5261692278082.9214377-UTR-M-pyrifera_M_contig72699:508..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72699 509..526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816623.2140474-CDS-M-pyrifera_M_contig72699:526..7361622816623.2140474-CDS-M-pyrifera_M_contig72699:526..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72699 527..736 +
1692278082.9327657-CDS-M-pyrifera_M_contig72699:526..7361692278082.9327657-CDS-M-pyrifera_M_contig72699:526..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72699 527..736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72699.17266.1prot_M-pyrifera_M_contig72699.17266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72699 527..736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72699.17266.1

>prot_M-pyrifera_M_contig72699.17266.1 ID=prot_M-pyrifera_M_contig72699.17266.1|Name=mRNA_M-pyrifera_M_contig72699.17266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MGYLMSWGMLGRLSTPILCGASVILMLQHSKGWARNMPDFSLLLQGWAGG
DSGRVARARRLSTSFVAHV*
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mRNA from alignment at M-pyrifera_M_contig72699:509..736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72699.17266.1 ID=mRNA_M-pyrifera_M_contig72699.17266.1|Name=mRNA_M-pyrifera_M_contig72699.17266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig72699:509..736+ (Macrocystis pyrifera P11B4 male)
CACTTGGCGGGGATCTTCATGGGCTACCTGATGTCCTGGGGCATGCTCGG
CCGCCTCTCCACCCCAATCCTGTGCGGAGCGTCGGTGATCCTGATGCTGC
AACATTCCAAGGGCTGGGCGAGAAACATGCCAGACTTCTCCCTCCTGCTT
CAGGGCTGGGCCGGGGGCGACTCGGGGCGGGTCGCCCGGGCTCGGAGGTT
GAGCACTTCCTTCGTCGCGCACGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72699:509..736+

>mRNA_M-pyrifera_M_contig72699.17266.1 ID=mRNA_M-pyrifera_M_contig72699.17266.1|Name=mRNA_M-pyrifera_M_contig72699.17266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig72699:509..736+ (Macrocystis pyrifera P11B4 male)
ATGGGCTACCTGATGTCCTGGGGCATGCTCGGCCGCCTCTCCACCCCAAT
CCTGTGCGGAGCGTCGGTGATCCTGATGCTGCAACATTCCAAGGGCTGGG
CGAGAAACATGCCAGACTTCTCCCTCCTGCTTCAGGGCTGGGCCGGGGGC
GACTCGGGGCGGGTCGCCCGGGCTCGGAGGTTGAGCACTTCCTTCGTCGC
GCACGTGTGAATGGGCTACCTGATGTCCTGGGGCATGCTCGGCCGCCTCT
CCACCCCAATCCTGTGCGGAGCGTCGGTGATCCTGATGCTGCAACATTCC
AAGGGCTGGGCGAGAAACATGCCAGACTTCTCCCTCCTGCTTCAGGGCTG
GGCCGGGGGCGACTCGGGGCGGGTCGCCCGGGCTCGGAGGTTGAGCACTT
CCTTCGTCGCGCACGTGTGA
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