mRNA_M-pyrifera_M_contig72471.17231.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A5J4U0R1_9EUKA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4U0R1_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 5.400e-14 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILG--GRIFQGPDLHTVLAARLRRCSYFVREA 342 LT D L YFS S FYD+ CIN++A + L +E AR + G EYS+ L+ D +FI+ + + +L A YYIL GR++Q PDL++++ +RL R YF R A Sbjct: 27 LTRDNWLEYFSLSQFYDRNCINQKAREQQL-NEVARLNLIGIEYSLEDLSTDD--------IFIISKRNRDAP-KHTQLLALYYILAKEGRLYQCPDLNSIIKSRLNRALYFFRGA 132
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A485KG13_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG13_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 6.080e-14 Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L TVL YF+ S +YDK C NE + E MTG EY L P DA+ + + LF++ + +G R + A YY+L I+Q P+ +T+L +RL++CSY + +A KA+ ++P +W Sbjct: 28 LNHQTVLYYFAGSPWYDKSCNNEILKMQRRPLEHLVS-MTGIEYE---LQPNDAK-QLPQNLFVIHKKNRTGP-RTAAVMAIYYVLDQTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYSW 153
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A024TZS3_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZS3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 9.910e-13 Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L +VL YF+ S +YDK C NE + E + MTG EY L P DA+ + + L+++ + +G R + A YY+L I+Q P+ +T+L +RL++CS+ V +A KA+ ++P W Sbjct: 33 LDHQSVLYYFAGSPWYDKNCNNEILKMQRRPLEHLQG-MTGIEYE---LQPNDAK-QVPQILYVIHKKNRTGP-RTAHVMAVYYVLDATIYQAPNTYTLLTSRLKKCSFRVNKAFKALSAGVRFSPTEGYAW 158
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A6G0XIG6_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIG6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.190e-12 Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L TVL YF+ S +YDK C NE + E MTG EY + EAK + LF++ + +G R + A YY+L I+Q P+ +T+L +RL++CSY + +A KA+ ++P +W Sbjct: 28 LNHQTVLYYFAGSPWYDKSCNNEILKMQRRPLEHLVS-MTGIEYELQL-----NEAKQLPQNLFVIHKKNRTGP-RTASVMAIYYVLDQTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYSW 153
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: W4GBN3_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBN3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.580e-12 Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L +VL YF+ S +YDK C NE + E + MTG EY + P EAK + L+++ + + R + A YY+L I+Q P+ +T+L +RL++CSY + +A KA+ ++P W Sbjct: 30 LDHQSVLYYFAGSPWYDKSCNNEILKMQRRPLEHLQG-MTGIEYELQP-----NEAKQLPQVLYVIHKKNRTSP-RTANVMAVYYVLDCTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYAW 155
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: W4GAK2_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAK2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 9.460e-12 Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L +VL YF+ S +YDK C NE + E + MTG EY + P EAK + L+++ + + R + A YY+L I+Q P+ +T+L +RL++CSY + +A KA+ ++P W Sbjct: 30 LDHQSVLYYFAGSPWYDKSCNNEILKMQRRPLEHLQG-MTGIEYELQP-----NEAKQLPQVLYVIHKKNRTSP-RTANVMAVYYVLDCTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYAW 155
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC) HSP 1 Score: 61.6 bits (148), Expect = 7.860e-9 Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPE--LQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATW 372 L TVL YFS S FYDK+C NE + L +A K M G EY V LF+V + P + +Q YYI+ G I+Q PD+ +V +R+ + + + A + + TW Sbjct: 44 LNKQTVLLYFSMSQFYDKQCNNEILKMQRL-DPSALKTMIGIEYEV--------VMAQEPMLFLVAK---QSRVSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKLLSTVTW 157
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A5S6R3W3_TRIMR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3W3_TRIMR) HSP 1 Score: 60.1 bits (144), Expect = 3.490e-8 Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 1 LTADTVLGYFSRS--DFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 + A VL YF+ + FYD C+NE+ + L+ E + +G EY++ + E LF++ + Y L+ YYI+GG ++Q PDL +VL +RL+ +R A + +K + P W Sbjct: 26 INASNVLDYFTNTMNPFYDPNCLNEQIRMQRLSPEVLSR-SSGVEYAL---------LYACEPLFVIRKQYRQANQTITPLE-DYYIIGGTVYQAPDLCSVLNSRLQASINHLRTAFEEVKSYYRFHPAKGYYW 148
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A1X7UXR5_AMPQE (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UXR5_AMPQE) HSP 1 Score: 59.7 bits (143), Expect = 4.950e-8 Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 1 Query: 1 LTADTVLGYFSR--SDFYDKECINERAAA-RGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 396 L D ++ YFS+ + FYD+ C NE RG S MTG EYS+ + L+++++ + + L A+YY+LGG ++Q PDLH+V+ +RL + + +A + + A + P W Sbjct: 20 LNQDNIMDYFSQRSNPFYDRTCNNEVIRMQRGDPSHLVN--MTGIEYSLFLVQE--------PVLYVIKKVHRQSPEKVIPL-ANYYVLGGVVYQCPDLHSVINSRLLSSLHLIHQAFEEAQSYARYGPSQGYYW 143
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI) HSP 1 Score: 59.3 bits (142), Expect = 7.990e-8 Identity = 38/124 (30.65%), Postives = 53/124 (42.74%), Query Frame = 1 Query: 1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATW 372 L T+L YFS S FYDK C NE+ + L A K M G EY + K E F + + YY++ G I+Q P+LH V +R+ + + EA +I W Sbjct: 82 LNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSAL-KNMDGLEYEL---------IKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNW 195 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72471.17231.1 >prot_M-pyrifera_M_contig72471.17231.1 ID=prot_M-pyrifera_M_contig72471.17231.1|Name=mRNA_M-pyrifera_M_contig72471.17231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAback to top mRNA from alignment at M-pyrifera_M_contig72471:306..707- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig72471.17231.1 ID=mRNA_M-pyrifera_M_contig72471.17231.1|Name=mRNA_M-pyrifera_M_contig72471.17231.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig72471:306..707- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig72471:306..707- >mRNA_M-pyrifera_M_contig72471.17231.1 ID=mRNA_M-pyrifera_M_contig72471.17231.1|Name=mRNA_M-pyrifera_M_contig72471.17231.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig72471:306..707- (Macrocystis pyrifera P11B4 male)back to top |