mRNA_M-pyrifera_M_contig72087.17156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72087.17156.1
Unique NamemRNA_M-pyrifera_M_contig72087.17156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72087.17156.1 vs. uniprot
Match: UPI0010A9E817 (autotransporter domain-containing protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010A9E817)

HSP 1 Score: 59.7 bits (143), Expect = 8.430e-7
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   31 AQAQDITIPSGTTVTTTQEITADGEGVTIEKGGSIDTVASSVRAVEGTANNQTFTNHGLIDSG 219
            A A D+T+ +GTT TTTQ I  DG+ +T+E+GG+IDT A+  + V  T +NQT  N G I  G
Sbjct:   27 AIAADVTVSTGTTETTTQTIDEDGDTLTVEEGGTIDTTAAGTQGVRATGDNQTVINRGTIKGG 89
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BLAST of mRNA_M-pyrifera_M_contig72087.17156.1 vs. uniprot
Match: UPI00145A346A (autotransporter domain-containing protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI00145A346A)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-6
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   31 AQAQDITIPSGTTVTTTQEITADGEGVTIEKGGSIDTVASS-VRAVEGTANNQTFTNHGLIDSGDTGLRSNGD 246
            A A D+TI S TT TTTQ I  DG+ +T+E GG IDT A++    VE TA+NQT  N G I     G+ S GD
Sbjct:   42 AGAADVTIDSNTTETTTQTIDEDGDTLTVEDGGIIDTSATADANGVEATADNQTMINDGTITGNKYGIHSYGD 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72087.17156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0010A9E8178.430e-749.21autotransporter domain-containing protein n=1 Tax=... [more]
UPI00145A346A1.510e-650.68autotransporter domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72087contigM-pyrifera_M_contig72087:141..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816616.658221-CDS-M-pyrifera_M_contig72087:140..8061622816616.658221-CDS-M-pyrifera_M_contig72087:140..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72087 141..806 +
1692278079.7175736-CDS-M-pyrifera_M_contig72087:140..8061692278079.7175736-CDS-M-pyrifera_M_contig72087:140..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72087 141..806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72087.17156.1prot_M-pyrifera_M_contig72087.17156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72087 141..806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72087.17156.1

>prot_M-pyrifera_M_contig72087.17156.1 ID=prot_M-pyrifera_M_contig72087.17156.1|Name=mRNA_M-pyrifera_M_contig72087.17156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
AIVLIWPPVWAQAQDITIPSGTTVTTTQEITADGEGVTIEKGGSIDTVAS
SVRAVEGTANNQTFTNHGLIDSGDTGLRSNGDDADINNSGTINAENFGIR
SEGARTAINNSGTIHSIEIGIRSDGDHAVITNTGIVNGDSQGTVVDIHGI
RLGGAYATVINRGTIVAEEDGIFAAGDHALIINRGTTKGGVAGIGSQGDY
ATVINAGRAVTGDGSGAIKLAG
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mRNA from alignment at M-pyrifera_M_contig72087:141..806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72087.17156.1 ID=mRNA_M-pyrifera_M_contig72087.17156.1|Name=mRNA_M-pyrifera_M_contig72087.17156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig72087:141..806+ (Macrocystis pyrifera P11B4 male)
GCGATCGTGCTGATATGGCCTCCGGTCTGGGCTCAGGCACAGGACATCAC
CATTCCGTCAGGCACCACGGTCACAACCACACAGGAAATAACGGCAGACG
GTGAAGGGGTCACCATCGAGAAAGGCGGCAGTATCGACACTGTCGCAAGC
AGTGTCAGGGCTGTCGAGGGAACGGCGAACAATCAGACCTTTACAAATCA
CGGGCTCATCGACAGCGGAGATACGGGGCTCCGTTCCAATGGCGACGATG
CTGACATCAACAACAGTGGAACCATCAATGCGGAAAACTTCGGCATCCGG
TCCGAAGGCGCGCGCACGGCGATCAACAACAGCGGCACCATCCATTCGAT
CGAAATCGGCATCCGTTCAGATGGCGACCATGCAGTCATCACCAACACCG
GCATCGTGAACGGCGATTCCCAGGGTACGGTGGTGGACATCCATGGCATT
CGACTGGGTGGTGCTTATGCCACCGTGATCAATCGCGGCACAATCGTCGC
AGAAGAGGACGGTATCTTCGCCGCAGGCGATCATGCGTTGATCATCAACA
GGGGTACCACCAAGGGCGGCGTTGCGGGGATCGGCTCGCAGGGGGACTAT
GCGACGGTGATCAATGCCGGTCGGGCGGTCACGGGCGACGGGTCCGGCGC
CATCAAGCTTGCCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72087:141..806+

>mRNA_M-pyrifera_M_contig72087.17156.1 ID=mRNA_M-pyrifera_M_contig72087.17156.1|Name=mRNA_M-pyrifera_M_contig72087.17156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig72087:141..806+ (Macrocystis pyrifera P11B4 male)
GCGATCGTGCTGATATGGCCTCCGGTCTGGGCTCAGGCACAGGACATCAC
CATTCCGTCAGGCACCACGGTCACAACCACACAGGAAATAACGGCAGACG
GTGAAGGGGTCACCATCGAGAAAGGCGGCAGTATCGACACTGTCGCAAGC
AGTGTCAGGGCTGTCGAGGGAACGGCGAACAATCAGACCTTTACAAATCA
CGGGCTCATCGACAGCGGAGATACGGGGCTCCGTTCCAATGGCGACGATG
CTGACATCAACAACAGTGGAACCATCAATGCGGAAAACTTCGGCATCCGG
TCCGAAGGCGCGCGCACGGCGATCAACAACAGCGGCACCATCCATTCGAT
CGAAATCGGCATCCGTTCAGATGGCGACCATGCAGTCATCACCAACACCG
GCATCGTGAACGGCGATTCCCAGGGTACGGTGGTGGACATCCATGGCATT
CGACTGGGTGGTGCTTATGCCACCGTGATCAATCGCGGCACAATCGTCGC
AGAAGAGGACGGTATCTTCGCCGCAGGCGATCATGCGTTGATCATCAACA
GGGGTACCACCAAGGGCGGCGTTGCGGGGATCGGCTCGCAGGGGGACTAT
GCGACGGTGATCAATGCCGGTCGGGCGGTCACGGGCGACGGGTCCGGCGC
CATCAAGCTTGCCGGGGCGATCGTGCTGATATGGCCTCCGGTCTGGGCTC
AGGCACAGGACATCACCATTCCGTCAGGCACCACGGTCACAACCACACAG
GAAATAACGGCAGACGGTGAAGGGGTCACCATCGAGAAAGGCGGCAGTAT
CGACACTGTCGCAAGCAGTGTCAGGGCTGTCGAGGGAACGGCGAACAATC
AGACCTTTACAAATCACGGGCTCATCGACAGCGGAGATACGGGGCTCCGT
TCCAATGGCGACGATGCTGACATCAACAACAGTGGAACCATCAATGCGGA
AAACTTCGGCATCCGGTCCGAAGGCGCGCGCACGGCGATCAACAACAGCG
GCACCATCCATTCGATCGAAATCGGCATCCGTTCAGATGGCGACCATGCA
GTCATCACCAACACCGGCATCGTGAACGGCGATTCCCAGGGTACGGTGGT
GGACATCCATGGCATTCGACTGGGTGGTGCTTATGCCACCGTGATCAATC
GCGGCACAATCGTCGCAGAAGAGGACGGTATCTTCGCCGCAGGCGATCAT
GCGTTGATCATCAACAGGGGTACCACCAAGGGCGGCGTTGCGGGGATCGG
CTCGCAGGGGGACTATGCGACGGTGATCAATGCCGGTCGGGCGGTCACGG
GCGACGGGTCCGGCGCCATCAAGCTTGCCGGG
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