mRNA_M-pyrifera_M_contig7163.17076.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7163.17076.1
Unique NamemRNA_M-pyrifera_M_contig7163.17076.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.190e-50
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 LMCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVYMPRE 339
            LMCYICATNAGN ILRAHYAFMA R+G+PIR+LAT  + D+   VA+D  + AK+VAAMALAEA SGTPST+SP L+GLLMRQYSPAGVIEL+ TVS+AFM+HRWT++YMPRE
Sbjct:  266 LMCYICATNAGNTILRAHYAFMAHRNGMPIRQLATATNTDSSEAVAADDTIDAKQVAAMALAEACSGTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPRE 378          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.250e-27
Identity = 65/113 (57.52%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 LMCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVYMPRE 339
            LM Y CATNA NN+LRAH+AFMA RSGV + RL  +   D  S    D A    E AAMA A+AAS TP+ M+  L GL+ R +SP  VIEL+ITVSV F  HRWTSVY+PR 
Sbjct:  350 LMAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQV--TDITSTGGGDSAA---EDAAMAFAQAASWTPTRMTAALAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRR 457          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.310e-25
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 MCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVYMPRE 339
            M Y+ AT+A N ILRAH+AFMA R+GV +  LA+  +   D+D   D     K+ AA+++A A  GTP  +   L+ LLMRQY+PAGVIELV T+S+  M  RWTS+YMP++
Sbjct:  292 MGYMLATSADNTILRAHFAFMAHRNGVSVSNLASATAEGGDTDGGEDL----KKAAALSMARACGGTPGPLPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 399          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.440e-24
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   22 TNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVYMPRE 339
            T+A N ILRAH+AFMA R+GV +  LA   +   D+D   D     K+ AA+++A A SGT   M   L+ LLMRQY+PAGVIELV T+S+  M  RWTS+YMP++
Sbjct:  104 TSADNTILRAHFAFMAHRNGVSVSDLANATAEGGDTDGGEDL----KKAAALSMARACSGTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 205          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: A0A0C2CZ51_9DELT (Putative fusion protein n=2 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CZ51_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 1.540e-9
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    4 MCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVY 327
            +C++ A  + N +L AH+AF+A R+G   +RLA+  +   D           ++ AA A A  A+ +P+ ++   I  L   ++PAG+IE+V+ +SV  M +R+TS Y
Sbjct:  324 LCFVAAKKSKNPLLAAHFAFLAIRAGATAKRLASALTPGDDEG---------RDAAAFAFAHVAAISPAAVTRKEIAGLTSFFTPAGIIEIVVALSVHGMLNRYTSTY 422          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: A0A2S9YSM1_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YSM1_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-9
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 1
Query:    4 MCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVY 327
            M ++ A  + N +L AHYA+ A RSG  +  L          D         +E AA ALA A S  P  +    I  LMR +SP G+IEL++T++   + HR+TS Y
Sbjct:  325 MGFVAAKASHNELLAAHYAYGAMRSGANVGML---------RDALEPSQAETREAAAFALARAISSPPVELRNDQILSLMRGHSPVGIIELIVTLATYTLLHRYTSTY 423          
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Match: A0A0C2D7D5_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2D7D5_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-9
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    4 MCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAVGAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFMFHRWTSVY 327
            M ++ A    N +L AH+AF A RSG  +  L          D  +      +E AA ALA + +  P  +S   I  LMR +SP G+IEL++T++   M HR+TS Y
Sbjct:  325 MGFVAARACNNQLLAAHFAFGAMRSGANVGMLL---------DALAPSQPETREAAAFALARSIAKPPVELSNDQIAGLMRGHSPVGIIELIVTLATFTMLHRYTSTY 423          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7163.17076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FMN7_ECTSI1.190e-5074.34Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWC3_9PHAE1.250e-2757.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE1.310e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G2_ECTSI3.440e-2450.94Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A0C2CZ51_9DELT1.540e-933.33Putative fusion protein n=2 Tax=Enhygromyxa salina... [more]
A0A2S9YSM1_9DELT2.870e-936.11Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A0C2D7D5_9DELT2.870e-936.11Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7163contigM-pyrifera_M_contig7163:12693..13034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000490.1
Exons1
Model size342
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.6872501-CDS-M-pyrifera_M_contig7163:12692..130311622816611.6872501-CDS-M-pyrifera_M_contig7163:12692..13031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7163 12693..13031 -
1692278076.8167737-CDS-M-pyrifera_M_contig7163:12692..130311692278076.8167737-CDS-M-pyrifera_M_contig7163:12692..13031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7163 12693..13031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.6983106-UTR-M-pyrifera_M_contig7163:13031..130341622816611.6983106-UTR-M-pyrifera_M_contig7163:13031..13034Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7163 13032..13034 -
1692278076.8329089-UTR-M-pyrifera_M_contig7163:13031..130341692278076.8329089-UTR-M-pyrifera_M_contig7163:13031..13034Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7163 13032..13034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7163.17076.1prot_M-pyrifera_M_contig7163.17076.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7163 12693..13031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7163.17076.1

>prot_M-pyrifera_M_contig7163.17076.1 ID=prot_M-pyrifera_M_contig7163.17076.1|Name=mRNA_M-pyrifera_M_contig7163.17076.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MCYICATNAGNNILRAHYAFMAFRSGVPIRRLATIASNDADSDVASDKAV
GAKEVAAMALAEAASGTPSTMSPTLIGLLMRQYSPAGVIELVITVSVAFM
FHRWTSVYMPRE*
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mRNA from alignment at M-pyrifera_M_contig7163:12693..13034-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7163.17076.1 ID=mRNA_M-pyrifera_M_contig7163.17076.1|Name=mRNA_M-pyrifera_M_contig7163.17076.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig7163:12693..13034- (Macrocystis pyrifera P11B4 male)
TTGATGTGCTATATTTGCGCGACGAACGCTGGCAACAACATCCTCCGCGC CCACTATGCCTTCATGGCCTTCCGCAGCGGCGTGCCCATCCGCCGGCTAG CCACCATCGCTAGCAACGATGCCGACAGCGACGTCGCGAGTGACAAGGCT GTCGGGGCGAAGGAGGTTGCCGCCATGGCTCTGGCAGAGGCGGCCAGCGG GACGCCCTCGACCATGTCACCGACTCTGATCGGGCTGCTGATGCGGCAGT ACTCGCCCGCGGGGGTGATCGAGCTGGTCATCACGGTATCGGTGGCTTTC ATGTTTCACCGCTGGACCTCCGTCTACATGCCGAGGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7163:12693..13034-

>mRNA_M-pyrifera_M_contig7163.17076.1 ID=mRNA_M-pyrifera_M_contig7163.17076.1|Name=mRNA_M-pyrifera_M_contig7163.17076.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig7163:12693..13034- (Macrocystis pyrifera P11B4 male)
ATGTGCTATATTTGCGCGACGAACGCTGGCAACAACATCCTCCGCGCCCA
CTATGCCTTCATGGCCTTCCGCAGCGGCGTGCCCATCCGCCGGCTAGCCA
CCATCGCTAGCAACGATGCCGACAGCGACGTCGCGAGTGACAAGGCTGTC
GGGGCGAAGGAGGTTGCCGCCATGGCTCTGGCAGAGGCGGCCAGCGGGAC
GCCCTCGACCATGTCACCGACTCTGATCGGGCTGCTGATGCGGCAGTACT
CGCCCGCGGGGGTGATCGAGCTGGTCATCACGGTATCGGTGGCTTTCATG
TTTCACCGCTGGACCTCCGTCTACATGCCGAGGGAGTGAATGTGCTATAT
TTGCGCGACGAACGCTGGCAACAACATCCTCCGCGCCCACTATGCCTTCA
TGGCCTTCCGCAGCGGCGTGCCCATCCGCCGGCTAGCCACCATCGCTAGC
AACGATGCCGACAGCGACGTCGCGAGTGACAAGGCTGTCGGGGCGAAGGA
GGTTGCCGCCATGGCTCTGGCAGAGGCGGCCAGCGGGACGCCCTCGACCA
TGTCACCGACTCTGATCGGGCTGCTGATGCGGCAGTACTCGCCCGCGGGG
GTGATCGAGCTGGTCATCACGGTATCGGTGGCTTTCATGTTTCACCGCTG
GACCTCCGTCTACATGCCGAGGGAGTGA
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