mRNA_M-pyrifera_M_contig71193.16980.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71193.16980.1
Unique NamemRNA_M-pyrifera_M_contig71193.16980.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71193.16980.1 vs. uniprot
Match: J9I8E7_9SPIT (MYND finger family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I8E7_9SPIT)

HSP 1 Score: 82.8 bits (203), Expect = 2.990e-14
Identity = 87/325 (26.77%), Postives = 138/325 (42.46%), Query Frame = 1 
Query:    1 DMVGTLRWPIDHVYGDVP---VEERECVIGPNLGWGKWLGTRLGGRGVGMDGDVIGCVKDERGGWKVHPSVVDGLSWALTAELGLEKVGWTPAWPKEEKGVEGVVTFVLMGGSWNVEQRI---VKYFRELRPWAMGKGIQHLRVVVVGPE-ARSLSPKQVWI----------GGV------KGLGEEWLRGEGCAFQDSPS-STVFMLFNPGFGNTNIALRQAWAPTLVSLLDSNASILIACANDHG-----------DLAGEVPILQSVLHAK--FLLPPTKNPFPAASTFVPEDTRSTPRSEAEKGARWSCANSFFYLIQGYK 864
            + VGT RW       ++P    E R  +   N GW  +LG R          + I   + +     + P  +DGLS+++T    + K+     + KE       VT V+MGG+   E+RI     Y+ EL  +         +   VGPE + S + K   +          G +      +G+  E L  +       P  ST F+ +NPGFG+    L  +W   L+ L++ N  +  + AND+            DL GE  + Q +   K  ++L P +NPF AA+ +           E +K   WSC+N+ FY I+G+K
Sbjct:   96 ESVGTFRWNDSVNLVNIPQFKAEYRVLLKTLNEGWQTYLGLRF---------EEIANEQTQE--INIQPHQLDGLSFSMTLVNLIMKLR---LFLKEN------VTIVVMGGTAKAEERIFVQTNYYEELTNFFPKTSF---KFYFVGPELSNSRNQKSFKVNERLDGFFHKGQISEFLIDQGINPESLENDEIIKSKFPQDSTFFIGYNPGFGSGYDLLLNSWCVDLIQLINLNLPVCFSQANDYSVTNFRVVNDLQDLRGETRVFQVIFEGKVNYVLEPQENPFRAATHY---------HEEGKKETSWSCSNTHFYGIKGWK 388
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BLAST of mRNA_M-pyrifera_M_contig71193.16980.1 vs. uniprot
Match: J9HNG3_9SPIT (Zinc finger MYND domain-containing protein 17 n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HNG3_9SPIT)

HSP 1 Score: 72.8 bits (177), Expect = 6.270e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:  553 FNPGFGNTNIALRQAWAPTLVSLLDSNASILIACANDHGDLAGEVPILQSVLHAK--FLLPPTKNPFPAASTFVPEDTRSTPRSEAEKGARWSCANSFFYLIQGYK 864
            +NPGFG+    L  +W   L+SL++ N  +  + AND+ DL GE  + Q +   K  ++  P +NPF AA+ +           E +K   WSC+N+ FY I+G+K
Sbjct:  237 YNPGFGSGYDLLLNSWCVDLISLVNLNLPVCFSQANDYSDLRGETRVFQVIFEGKVNYVFEPQENPFRAATHY---------HEEGKKETSWSCSNTHFYGIKGWK 333
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71193.16980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
J9I8E7_9SPIT2.990e-1426.77MYND finger family protein n=1 Tax=Oxytricha trifa... [more]
J9HNG3_9SPIT6.270e-1134.91Zinc finger MYND domain-containing protein 17 n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71193contigM-pyrifera_M_contig71193:172..1158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue6.6e-18
Seed eggNOG ortholog42099.EPrPV00000014795
Hectar predicted targeting categoryother localisation
EggNOG OGs1MFDQ@121069,29R65@1,2RXAD@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003220.1
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size864
Cds size861
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71193.16980.1prot_M-pyrifera_M_contig71193.16980.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71193 175..1158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.2643352-UTR-M-pyrifera_M_contig71193:171..1741622816606.2643352-UTR-M-pyrifera_M_contig71193:171..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71193 172..174 +
1692278073.5777335-UTR-M-pyrifera_M_contig71193:171..1741692278073.5777335-UTR-M-pyrifera_M_contig71193:171..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71193 172..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.2779896-CDS-M-pyrifera_M_contig71193:174..6281622816606.2779896-CDS-M-pyrifera_M_contig71193:174..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71193 175..628 +
1692278073.600931-CDS-M-pyrifera_M_contig71193:174..6281692278073.600931-CDS-M-pyrifera_M_contig71193:174..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71193 175..628 +
1622816606.2907462-CDS-M-pyrifera_M_contig71193:751..11581622816606.2907462-CDS-M-pyrifera_M_contig71193:751..1158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71193 752..1158 +
1692278073.6122007-CDS-M-pyrifera_M_contig71193:751..11581692278073.6122007-CDS-M-pyrifera_M_contig71193:751..1158Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71193 752..1158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71193.16980.1

>prot_M-pyrifera_M_contig71193.16980.1 ID=prot_M-pyrifera_M_contig71193.16980.1|Name=mRNA_M-pyrifera_M_contig71193.16980.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=287bp
MVGTLRWPIDHVYGDVPVEERECVIGPNLGWGKWLGTRLGGRGVGMDGDV
IGCVKDERGGWKVHPSVVDGLSWALTAELGLEKVGWTPAWPKEEKGVEGV
VTFVLMGGSWNVEQRIVKYFRELRPWAMGKGIQHLRVVVVGPEARSLSPK
QVWIGGVKGLGEEWLRGEGCAFQDSPSSTVFMLFNPGFGNTNIALRQAWA
PTLVSLLDSNASILIACANDHGDLAGEVPILQSVLHAKFLLPPTKNPFPA
ASTFVPEDTRSTPRSEAEKGARWSCANSFFYLIQGYK
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mRNA from alignment at M-pyrifera_M_contig71193:172..1158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71193.16980.1 ID=mRNA_M-pyrifera_M_contig71193.16980.1|Name=mRNA_M-pyrifera_M_contig71193.16980.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=987bp|location=Sequence derived from alignment at M-pyrifera_M_contig71193:172..1158+ (Macrocystis pyrifera P11B4 male)
GATATGGTGGGTACTTTGCGATGGCCAATAGATCATGTGTATGGAGATGT
TCCAGTTGAGGAGCGAGAGTGTGTCATAGGGCCGAATTTAGGATGGGGAA
AATGGTTGGGCACAAGGCTTGGCGGGAGAGGGGTAGGGATGGATGGTGAT
GTGATTGGGTGTGTGAAAGATGAAAGGGGAGGTTGGAAAGTCCATCCAAG
TGTTGTGGATGGCTTGTCTTGGGCATTAACTGCCGAGTTGGGATTGGAAA
AGGTTGGTTGGACACCAGCATGGCCGAAAGAGGAAAAGGGAGTGGAGGGA
GTGGTGACGTTTGTGTTGATGGGAGGCTCTTGGAACGTGGAGCAACGAAT
TGTTAAATATTTCCGGGAATTACGGCCATGGGCAATGGGGAAAGGGATCC
AGCATTTGAGGGTTGTGGTTGTTGGGCCAGAAGCAAGATCTCTTTCACCG
AAACAAGGTGACCAGATATGGAGGGGTGTGGTATGGAAGGAAGTGGGTGA
GGAAAAAGGTGGTGGAGGTGGTGGGGGAGAGGAGAGTGGAAGGTCTTTGC
CCTCTTCCACTCGACGTTCTGTTCCGAGAGTATGGATTGGGGGTGTGAAG
GGATTGGGAGAGGAGTGGTTGCGTGGTGAAGGATGTGCATTTCAAGATTC
ACCATCATCTACAGTATTTATGTTGTTCAACCCCGGGTTTGGAAACACAA
ACATCGCACTACGACAAGCATGGGCACCGACATTAGTTTCTCTGTTGGAT
TCCAATGCTTCCATCCTTATAGCATGTGCAAATGATCATGGTGATCTTGC
TGGAGAAGTTCCAATCTTGCAATCGGTGCTGCATGCAAAGTTTCTCCTGC
CACCCACTAAAAACCCTTTTCCTGCTGCCTCTACCTTTGTTCCTGAAGAT
ACTCGTTCCACTCCACGATCTGAAGCAGAGAAAGGAGCAAGGTGGAGCTG
TGCAAATTCCTTTTTTTACCTCATCCAGGGGTACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71193:172..1158+

>mRNA_M-pyrifera_M_contig71193.16980.1 ID=mRNA_M-pyrifera_M_contig71193.16980.1|Name=mRNA_M-pyrifera_M_contig71193.16980.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1722bp|location=Sequence derived from alignment at M-pyrifera_M_contig71193:172..1158+ (Macrocystis pyrifera P11B4 male)
ATGGTGGGTACTTTGCGATGGCCAATAGATCATGTGTATGGAGATGTTCC
AGTTGAGGAGCGAGAGTGTGTCATAGGGCCGAATTTAGGATGGGGAAAAT
GGTTGGGCACAAGGCTTGGCGGGAGAGGGGTAGGGATGGATGGTGATGTG
ATTGGGTGTGTGAAAGATGAAAGGGGAGGTTGGAAAGTCCATCCAAGTGT
TGTGGATGGCTTGTCTTGGGCATTAACTGCCGAGTTGGGATTGGAAAAGG
TTGGTTGGACACCAGCATGGCCGAAAGAGGAAAAGGGAGTGGAGGGAGTG
GTGACGTTTGTGTTGATGGGAGGCTCTTGGAACGTGGAGCAACGAATTGT
TAAATATTTCCGGGAATTACGGCCATGGGCAATGGGGAAAGGGATCCAGC
ATTTGAGGGTTGTGGTTGTTGGGCCAGAAGCAAGATCTCTTTCACCGAAA
CAAGATGGTGGGTACTTTGCGATGGCCAATAGATCATGTGTATGGAGATG
TTCCAGTTGAGGAGCGAGAGTGTGTCATAGGGCCGAATTTAGGATGGGGA
AAATGGTTGGGCACAAGGCTTGGCGGGAGAGGGGTAGGGATGGATGGTGA
TGTGATTGGGTGTGTGAAAGATGAAAGGGGAGGTTGGAAAGTCCATCCAA
GTGTTGTGGATGGCTTGTCTTGGGCATTAACTGCCGAGTTGGGATTGGAA
AAGGTTGGTTGGACACCAGCATGGCCGAAAGAGGAAAAGGGAGTGGAGGG
AGTGGTGACGTTTGTGTTGATGGGAGGCTCTTGGAACGTGGAGCAACGAA
TTGTTAAATATTTCCGGGAATTACGGCCATGGGCAATGGGGAAAGGGATC
CAGCATTTGAGGGTTGTGGTTGTTGGGCCAGAAGCAAGATCTCTTTCACC
GAAACAAGTATGGATTGGGGGTGTGAAGGGATTGGGAGAGGAGTGGTTGC
GTGGTGAAGGATGTGCATTTCAAGATTCACCATCATCTACAGTATTTATG
TTGTTCAACCCCGGGTTTGGAAACACAAACATCGCACTACGACAAGCATG
GGCACCGACATTAGTTTCTCTGTTGGATTCCAATGCTTCCATCCTTATAG
CATGTGCAAATGATCATGGTGATCTTGCTGGAGAAGTTCCAATCTTGCAA
TCGGTGCTGCATGCAAAGTTTCTCCTGCCACCCACTAAAAACCCTTTTCC
TGCTGCCTCTACCTTTGTTCCTGAAGATACTCGTTCCACTCCACGATCTG
AAGCAGAGAAAGGAGCAAGGTGGAGCTGTGCAAATTCCTTTTTTTACCTC
ATCCAGGGGTACAAGTATGGATTGGGGGTGTGAAGGGATTGGGAGAGGAG
TGGTTGCGTGGTGAAGGATGTGCATTTCAAGATTCACCATCATCTACAGT
ATTTATGTTGTTCAACCCCGGGTTTGGAAACACAAACATCGCACTACGAC
AAGCATGGGCACCGACATTAGTTTCTCTGTTGGATTCCAATGCTTCCATC
CTTATAGCATGTGCAAATGATCATGGTGATCTTGCTGGAGAAGTTCCAAT
CTTGCAATCGGTGCTGCATGCAAAGTTTCTCCTGCCACCCACTAAAAACC
CTTTTCCTGCTGCCTCTACCTTTGTTCCTGAAGATACTCGTTCCACTCCA
CGATCTGAAGCAGAGAAAGGAGCAAGGTGGAGCTGTGCAAATTCCTTTTT
TTACCTCATCCAGGGGTACAAG
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