mRNA_M-pyrifera_M_contig70768.16892.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70768.16892.1
Unique NamemRNA_M-pyrifera_M_contig70768.16892.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A7S1C963_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C963_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.810e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   31 LHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEEIGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            L  +LHTILF+R+ G VTPV V+    L V + R G+ ++  AV   V R  ASL  VGP+L+R  L L FY   ++KS  G+T   ERV++E W++  LV+
Sbjct:   22 LRAVLHTILFSRALGPVTPVEVASP-LLDVAHVRCGSVDVDKAVEEGVERVRASLVPVGPDLARATLVLSFYEN-RKKSFFGITKSTERVYWEMWSLPCLVN 121          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A1E7F556_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F556_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIG--------NEEIGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E A  +   AL  IL+TILF RS G V+P  V   G   + YPRI         N ++   V  +++  L  L  +GP L  G L L F+ R K + + GL S  ERV +E+W++R++V+
Sbjct:   12 ELATGQVREALQAILYTILFIRSPGPVSPRDVECEGFDFLTYPRIATSSSLSTLNYDVDKRVDQSIQNFLMKLSQIGPELLSGGLTLSFFERRKTQQLFGLVSNEERVVWEQWHLRVVVN 131          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A1Z5KIE0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIE0_FISSO)

HSP 1 Score: 66.6 bits (161), Expect = 5.140e-11
Identity = 46/131 (35.11%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNE-------------------EIGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E +  +  +AL CILHTILF RS G VTP  V    +  + Y RI N                    +I   V  A+   L +L  +GP L  G L + F+ R   + + GL S  ERV FE+W +RL+V+
Sbjct:   12 ELSTAQVRSALQCILHTILFLRSPGPVTPKDVE-CEDFNLTYARIANNHQNQPPNKAMGNIVHSLENDIDQKVDDAIESFLRTLSQIGPELLSGCLTVSFFERRATRQLFGLVSHEERVVFEQWVIRLVVN 141          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A1Z5KEC3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEC3_FISSO)

HSP 1 Score: 64.7 bits (156), Expect = 1.520e-10
Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNE-------------------EIGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E +  +  +AL CILHTILF RS G VTP  V    +  + Y RI N                    +I   V  A+   L +L  +GP L  G L + F+ R   + + GL S  ERV FE+W +R++V+
Sbjct:   12 ELSTAQVRSALQCILHTILFLRSPGPVTPKDVE-CEDFNLTYARIANNHQNQPPNKAMGNIVHSLENDIDQKVDDAIESFLRTLSQIGPELLSGCLTVSFFERRATRQLFGLVSHEERVVFEQWVMRVVVN 141          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A7R9WVQ8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVQ8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.100e-9
Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEE-----IGIA---------VGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E    +   AL  IL+TILF RS G VTP  V   G   + YPRI +++     +G++         V  A+   L SL  +GP L  G L L F+ R   + + GL S  ERV +E+W++R +V+
Sbjct:   55 ELTTGQVREALQAILYTILFVRSPGPVTPHDVECEG-FNLTYPRISSDKSPSAPVGLSSLENDVDKKVDDAIELFLRSLSQIGPELLSGGLTLSFFERRATRQLFGLVSNEERVVWEQWHMRAVVN 179          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A7S1ZEN7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEN7_TRICV)

HSP 1 Score: 60.1 bits (144), Expect = 1.420e-8
Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEE---IGIAVGAAVRR--------------CLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E A  +   AL  ILHTILF RS G V P  +   G   + Y RI N++   + +  G AV +               L SL  +GP L  G L L F+ R   + + GL S  ERV +E+W +R++V+
Sbjct:   12 ELATGQVREALQAILHTILFIRSPGPVAPRDIHCEG-FDLTYSRIANDDGNQVAVVSGPAVVQENDIDKKVDDSIEVFLRSLSQIGPELLSGCLTLSFFERRASRQLFGLVSHEERVVWEQWILRVVVN 139          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: K0SBE9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBE9_THAOC)

HSP 1 Score: 58.5 bits (140), Expect = 5.590e-8
Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 1
Query:   28 ALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEEI---GIAVGAAVRR---------------------CLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            AL  ++HT+LF RS G V+P  V      G+ Y RI  E     GI  G A RR                      L +L  +GP L  G L + F+ R  +K + GL    E+V FE+W VR+LV+
Sbjct:   21 ALAAVIHTVLFIRSPGPVSPFDVH-CESFGLTYTRIATENDPLHGIVTGGASRRQNKSTSSYQQLDRKVDGSIEEFLQTLTPIGPELMAGNLAISFFERRPKKQLFGLHITEEKVPFEQWIVRVLVN 146          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A7S4VM27_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM27_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-7
Identity = 45/134 (33.58%), Postives = 60/134 (44.78%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEE----------------------IGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E A  +   AL  ILHTILF RS G V P  V   G   + Y RI   +                      +   V  A+   L SL  +GP L  G L LGF+ R   + + GL S  ERV +E+W +R++V+
Sbjct:   12 ELATGQVREALQAILHTILFIRSPGPVAPRDVHCEG-FDLTYTRIATNDGSSIRSDGGGRSISRSISIENDLDKKVDDAIEVFLRSLTQIGPELLSGCLTLGFFERRATRQLFGLVSHEERVVWEQWILRVVVN 144          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A812YBK7_9DINO (ATG101 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YBK7_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 7.330e-7
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   31 LHCILHTILFNRSYGLVTPVMVSGVGEL-GVGYPRIGNEEIGIAVGAAVRRC-LASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            L  +LHTI+F+RS G+VTPV  S   EL    +  IG  E+  +V  AV +  L SL+   P  + G + L F+T+    S++GL     R  FE W +  LVD
Sbjct:   14 LRAVLHTIVFHRSLGVVTPVHESS--ELFQAQWCSIGMAEVSASVEDAVEQLSLDSLQPRSPTSAGGSVTLSFHTKTTVASLIGLGGTTLRKQFEEWRIPFLVD 115          
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Match: A0A7S2I1L3_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2I1L3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-6
Identity = 44/136 (32.35%), Postives = 60/136 (44.12%), Query Frame = 1
Query:    1 ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEE------------------------IGIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERVFFERWNVRLLVD 336
            E A  +   AL  ILHTILF RS G V P  V+  G   + Y RI   +                        +   V  A+   L SL  +GP L  G L L F+ R   + + GL S  ERV +E+W +R++V+
Sbjct:   12 ELATGQVREALQAILHTILFIRSPGPVAPRDVNCEG-FDLTYNRIATNDGTPPTSTRSLDGRTISRSSSLENDVDKKVDGAIEVFLRSLTQIGPELLSGCLTLAFFERRATRQLFGLVSHEERVVWEQWILRVVVN 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70768.16892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S1C963_9STRA1.810e-1544.12Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1E7F556_9STRA1.170e-1136.67Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5KIE0_FISSO5.140e-1135.11Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KEC3_FISSO1.520e-1034.35Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9WVQ8_9STRA1.100e-935.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1ZEN7_TRICV1.420e-834.88Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0SBE9_THAOC5.590e-834.65Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4VM27_9STRA1.610e-733.58Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A812YBK7_9DINO7.330e-738.46ATG101 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S2I1L3_9STRA1.070e-632.35Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70768contigM-pyrifera_M_contig70768:178..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D8LK81
Preferred nameATG101
KEGG koko:K19730
KEGG Pathwayko04136,ko04140,ko04211,map04136,map04140,map04211
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0002165,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0007275,GO:0007552,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0010623,GO:0012501,GO:0012505,GO:0016020,GO:0016043,GO:0016236,GO:0016239,GO:0016241,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034045,GO:0035069,GO:0035096,GO:0035973,GO:0042175,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048707,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0060033,GO:0061695,GO:0061912,GO:0061919,GO:0065007,GO:0070925,GO:0071840,GO:0098805,GO:0098827,GO:1902494,GO:1902554,GO:1902911,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG4493@1,KOG4493@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.3071141-CDS-M-pyrifera_M_contig70768:177..2811622816601.3071141-CDS-M-pyrifera_M_contig70768:177..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70768 178..281 +
1692278070.7997887-CDS-M-pyrifera_M_contig70768:177..2811692278070.7997887-CDS-M-pyrifera_M_contig70768:177..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70768 178..281 +
1622816601.3185499-CDS-M-pyrifera_M_contig70768:351..5831622816601.3185499-CDS-M-pyrifera_M_contig70768:351..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70768 352..583 +
1692278070.8101048-CDS-M-pyrifera_M_contig70768:351..5831692278070.8101048-CDS-M-pyrifera_M_contig70768:351..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70768 352..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70768.16892.1prot_M-pyrifera_M_contig70768.16892.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70768 178..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70768.16892.1

>prot_M-pyrifera_M_contig70768.16892.1 ID=prot_M-pyrifera_M_contig70768.16892.1|Name=mRNA_M-pyrifera_M_contig70768.16892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
ECAADEASAALHCILHTILFNRSYGLVTPVMVSGVGELGVGYPRIGNEEI
GIAVGAAVRRCLASLETVGPNLSRGRLCLGFYTRYKRKSMLGLTSELERV
FFERWNVRLLVD
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mRNA from alignment at M-pyrifera_M_contig70768:178..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70768.16892.1 ID=mRNA_M-pyrifera_M_contig70768.16892.1|Name=mRNA_M-pyrifera_M_contig70768.16892.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=406bp|location=Sequence derived from alignment at M-pyrifera_M_contig70768:178..583+ (Macrocystis pyrifera P11B4 male)
GAATGTGCTGCTGATGAAGCGTCTGCAGCGTTGCATTGCATCTTGCATAC CATTCTATTCAATCGGTCCTATGGTCTGGTGACGCCTGTGATGGTAAGTG GAGTGTGCAGTGGAGACGGAGGGGAGTTGCAAGGTGGGAACAGAGGTTTT GGGCGGTTTTTGGATGCAGGAGAGAGGAGAACTGGGTGTAGGGTATCCTA GGATAGGGAATGAGGAGATTGGGATTGCAGTGGGTGCAGCTGTTCGTCGT TGTCTGGCGTCGCTGGAGACTGTGGGGCCCAATTTATCGAGGGGCAGGCT GTGTCTGGGGTTCTATACGAGATACAAGCGAAAATCTATGCTTGGTCTCA CCAGTGAGTTGGAACGTGTCTTTTTTGAGCGGTGGAATGTGAGATTGCTC GTAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70768:178..583+

>mRNA_M-pyrifera_M_contig70768.16892.1 ID=mRNA_M-pyrifera_M_contig70768.16892.1|Name=mRNA_M-pyrifera_M_contig70768.16892.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig70768:178..583+ (Macrocystis pyrifera P11B4 male)
GAATGTGCTGCTGATGAAGCGTCTGCAGCGTTGCATTGCATCTTGCATAC
CATTCTATTCAATCGGTCCTATGGTCTGGTGACGCCTGTGATGGTAAGTG
GAGTGAATGTGCTGCTGATGAAGCGTCTGCAGCGTTGCATTGCATCTTGC
ATACCATTCTATTCAATCGGTCCTATGGTCTGGTGACGCCTGTGATGGTA
AGTGGAGTAGGAGAACTGGGTGTAGGGTATCCTAGGATAGGGAATGAGGA
GATTGGGATTGCAGTGGGTGCAGCTGTTCGTCGTTGTCTGGCGTCGCTGG
AGACTGTGGGGCCCAATTTATCGAGGGGCAGGCTGTGTCTGGGGTTCTAT
ACGAGATACAAGCGAAAATCTATGCTTGGTCTCACCAGTGAGTTGGAACG
TGTCTTTTTTGAGCGGTGGAATGTGAGATTGCTCGTAGACAGGAGAACTG
GGTGTAGGGTATCCTAGGATAGGGAATGAGGAGATTGGGATTGCAGTGGG
TGCAGCTGTTCGTCGTTGTCTGGCGTCGCTGGAGACTGTGGGGCCCAATT
TATCGAGGGGCAGGCTGTGTCTGGGGTTCTATACGAGATACAAGCGAAAA
TCTATGCTTGGTCTCACCAGTGAGTTGGAACGTGTCTTTTTTGAGCGGTG
GAATGTGAGATTGCTCGTAGAC
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