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Homology
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: D7G7N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N6_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 4.640e-23 Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 3
Query: 21 GVGSWLVDLIMKPGTSVQLVPAINVALVLIVGLLVYLVLNGESSIHVYVMGFLAVGLMASVNW 209
G+G WLVDL MKPG+SVQLVP IN L ++VGLLVY+ +GE SIHVYVMGFL++GLM SVNW
Sbjct: 23 GIGQWLVDLAMKPGSSVQLVPFINGVLCILVGLLVYVAASGEGSIHVYVMGFLSIGLMGSVNW 85
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: A0A7S1UA77_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA77_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.960e-15 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query: 27 GSWLVDLIMKPGTSVQLVPAINVALVLIVGLLVYLVL---NGESSIHVYVMGFLAVGLMASVNWFISEFNKVKQQQEQDG 257
G W ++LIM PG+SVQL+P IN+AL +++G++ Y NG +H VM FLA+GL +NWF+ E+ K K +QE G
Sbjct: 32 GEWAINLIMAPGSSVQLLPVINLALAIVIGVMGYTAYSTDNGAVQLHCSVMSFLALGLCVVINWFVGEYQKAKAEQEAAG 111
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: A0A7S2WUH3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 9.280e-10 Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query: 12 PSGGVGSWLVDLIMKPGTSVQLVPAINVALVLIVGLLVYLVLNGESSIHVYVMGFLAVGLMASVNWFISEFNKVK 236
P GV LV +++PGT L+P IN +L ++ L + G SIH+ VM LA+GLMASVNWF++EF +++
Sbjct: 6 PEDGVLQTLVVALVEPGTGHLLLPFINYSLCALLLTLAVVAAYGYGSIHLVVMAILALGLMASVNWFVAEFKRLE 80
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: A0A482S8M5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8M5_9ARCH) HSP 1 Score: 53.5 bits (127), Expect = 2.250e-7 Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query: 33 WLVDLIMKPGTSVQLVPAINVALVLIVG-LLVYLVLNGESSIHVYVMGFLAVGLMASVNW 209
+++DLI +PG+S+ LVPAINV ++L++ LLV + IH+ VM LAVGL+ SVNW
Sbjct: 6 FILDLIFQPGSSLWLVPAINVTVLLLIAMLLVTGFYTDVAKIHIVVMSTLAVGLLLSVNW 65
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: L1JD47_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JD47_GUITC) HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5 Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 3
Query: 18 GGVGSWLVDLIMKPGTSV-----QLVPAINVALVLIVGLLVYLVLNGESSIHVYVMGFLAVGLMASVNWFISEFNKVK 236
GG GSWLV+ +MKPG+S+ +++ + +AL L + L++L +IH Y+ LA+GL SV +FI+E K +
Sbjct: 11 GGAGSWLVEWLMKPGSSMSAGMQKVLNNVFIALFLCIIFLMWL--TNFGNIHTYIFFLLALGLFFSVRFFITELTKAQ 86
BLAST of mRNA_M-pyrifera_M_contig7076.16889.1 vs. uniprot
Match: A0A1V9ZQU9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZQU9_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 2.040e-5 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 3
Query: 51 MKPGTSVQLVPAINVALVLIVGLLVYLVLNG-ESSIHVYVMGFLAVGLMASVNWFISE 221
++PG + V +N+ L+ +VG++ + +G E S H+Y+ FLAVGL AS+NWFI E
Sbjct: 12 LEPGAGNKFVIVLNLVLIALVGVISMTIWSGMEDSFHMYIFLFLAVGLTASINWFIVE 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-22_001650.1 |
Exons | 3 |
Model size | 323 |
Cds size | 309 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816601.1355658-UTR-M-pyrifera_M_contig7076:6335..6337 | 1622816601.1355658-UTR-M-pyrifera_M_contig7076:6335..6337 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7076 6336..6337 + |
1692278070.6893563-UTR-M-pyrifera_M_contig7076:6335..6337 | 1692278070.6893563-UTR-M-pyrifera_M_contig7076:6335..6337 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7076 6336..6337 + |
1622816601.192224-UTR-M-pyrifera_M_contig7076:11328..11340 | 1622816601.192224-UTR-M-pyrifera_M_contig7076:11328..11340 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7076 11329..11340 + |
1692278070.7453399-UTR-M-pyrifera_M_contig7076:11328..11340 | 1692278070.7453399-UTR-M-pyrifera_M_contig7076:11328..11340 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7076 11329..11340 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816601.1480906-CDS-M-pyrifera_M_contig7076:6337..6412 | 1622816601.1480906-CDS-M-pyrifera_M_contig7076:6337..6412 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 6338..6412 + |
1692278070.702796-CDS-M-pyrifera_M_contig7076:6337..6412 | 1692278070.702796-CDS-M-pyrifera_M_contig7076:6337..6412 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 6338..6412 + |
1622816601.1587968-CDS-M-pyrifera_M_contig7076:9195..9326 | 1622816601.1587968-CDS-M-pyrifera_M_contig7076:9195..9326 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 9196..9326 + |
1692278070.7225187-CDS-M-pyrifera_M_contig7076:9195..9326 | 1692278070.7225187-CDS-M-pyrifera_M_contig7076:9195..9326 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 9196..9326 + |
1622816601.179832-CDS-M-pyrifera_M_contig7076:11225..11328 | 1622816601.179832-CDS-M-pyrifera_M_contig7076:11225..11328 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 11226..11328 + |
1692278070.7335289-CDS-M-pyrifera_M_contig7076:11225..11328 | 1692278070.7335289-CDS-M-pyrifera_M_contig7076:11225..11328 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7076 11226..11328 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7076.16889.1 >prot_M-pyrifera_M_contig7076.16889.1 ID=prot_M-pyrifera_M_contig7076.16889.1|Name=mRNA_M-pyrifera_M_contig7076.16889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MPAPSGGVGSWLVDLIMKPGTSVQLVPAINVALVLIVGLLVYLVLNGESS IHVYVMGFLAVGLMASVNWFISEFNKVKQQQEQDGGGAPAAKEDAAGRQK SD* back to topmRNA from alignment at M-pyrifera_M_contig7076:6336..11340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig7076.16889.1 ID=mRNA_M-pyrifera_M_contig7076.16889.1|Name=mRNA_M-pyrifera_M_contig7076.16889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5005bp|location=Sequence derived from alignment at M-pyrifera_M_contig7076:6336..11340+ (Macrocystis pyrifera P11B4 male) GCATGCCGGCACCTAGTGGAGGAGTAGGTTCATGGCTCGTCGACCTCATC
ATGAAGCCCGGAACCTCTGTCCAATTGGTGAGCAAAGCAAGAGTATTTTC
GCTCTACTGGTCTGTTTCGTGACTCACATATACCTCCTAGAGGTACCACA
GCAATACTGGCAGCAGAGAAGCAAACAAGCAAGCGAACGGTCGTACTGCA
CCGTCTCTGAGGCTTCAAGGCTTTCGAACACCCTGATGAGAGGCACACCC
CTAGTACTAATAGGGGTGCCGAGACTCATGTTCTGCACATCGTGCGTGGT
GTTACTTTAAGGGAGAGGAGGACGGCGCTATCTTCAAGCGTGATGAGGTT
CGATTAACTGTCAAAGGGTCTGACTGAGGTCTGAGCGCACATCACCAAAG
CGGCGGATTCTCAGGGTCGCGTTCGTTCCTACTGCCGTTGAACAACCATC
TCACGACGCCCCGACCCAAGCATGCATGATGATACCTGGTACCAGTCTGA
CAGCAAGGACGACGAACAGGCGCTGCTGTGTGTTACGTGTTTACCCGATC
CCCGATACATGGGTTGCTCTCTTTGCCCCTACATAGTAGGACAGACTAAG
GTGACACACTAAGGAAACTAAAGTAGGCTGCGTATAGAGGTTGTCCTACG
AACAGCTGTTACCCGAATACGAGTATTAATATTACGGGGGGGCATAGTAA
ATAGGACCAAATATTGATAGTAAAAATAGGTAAATATATAGGTTTTGTGT
ATACCGTAGGTCCTATTTACTATGGACCCCCGTAATAGTATCTGTGAGAA
TGGCCTGGACTCTGCTTGTGACAACGGGCAAACCGAACGAATGCTCAGCA
GTGAAATCATGTACCGCCAGGTATAGGATCCATCGTAGATTGAGGAGTTC
CATGTTGGATAGGGATTCTGGTAGTGGGATATCGGGATAATGTGCGAGCC
TCCTGATGCCACTCATTGTTGAGCTCCTTATGAGACTGAGTCAACTCGAC
AGCTCGAGAATAATACAGACAAGAGTACCGTGTACTTGGCTTGGGTGACC
ACCACGCGTTCCCGTGCCACCTGTGTCTACAGCTTCAGAGATCGATCAAC
ACACTATTAATAGTTAGCCGGTTATCTTCTATTGACGAGCGCGGCCATGG
CCATCCCAACGGAAAATCCCAGAAGGGAGGGATCTGCGTCCAGCTAATGT
CAAGTCACGAGGATGCCTGCATGGAGCAGGAAAGCGTGGAGTGTGTGTTG
TAATATTTGAAGTTGGTCCATATTCAGAGAACGACGCAGAAGCTTCAGAG
AGATGTAAAGCTGGCCAATGTTGAGATAACGACGCAGAAGCTTCAGAGAG
AAGGTGTGAAGCTTATGCGTCGTTATCTGAGTATCGACCAGCTTTACGTG
TTCTAACACACACTGCACGCTTTCCTCCTCCATGTCAGCAGCCCCGTGAC
GTGATGTGAGCTGGACGCTGAACCCTCCCCTCTGGCATTCCCCTCTGGGA
TGGCCGTGGCCGCGCTCGCCAATAGAAGATAACCGGATCACTATTAATAT
TCAATAGTGTGTTGGAAAATCTCTAAAGCTGTACGTAGACGCAGCTGGCA
CGGGAACGCGTGGCAGTGACTCAAGGCATGCTTGACTTCGACTGTCGGGT
ACCATCAACGTTTCCAGGTGGAAAAAAGGAGAAAGTGGATTCCTCTATTC
TCACCAGCAGTAGCGCGTGGCAAGGGGTTCGCCCCGAAAATTAATGTCGA
GACCGAGTCGAACTTGCAAAGCAGATATTGTGTTGCTTGGAAGGGATACC
TTGCTGTGGGTGCACGGGAATAAAAAGCGCAACCAACTAGCGCACTGAGT
GAGTGGAGTAGTAGGGCATCCCTTCTCTGACCAATAAAGTCAATGCGTCG
TTTTAGTTCGGATGCTTGTGGAATCCCCAGCAGCGCGAGCTGCTTTTGGT
TGACCGTTGGTGTAATCGTCCTACGAAGTTCGCATGAGTTTTATCAATTC
GGCATGTTGTCCCTTTGAGGCCGTTTCCTATGCGGTCCGATTTTTGAGCT
TCAGATTTTGACCCGATCGCATTTTTAGATGTGAAGTTGGCAAATCGAAA
CAGTCGTCCTTTGCGGAAAAATCAGATTTATTACTACGTGTGCTGAGATT
CGAGCAAACGCCAAGACTAACTGCATTTGTTGTGGTCTGGCGCCACGAAG
AGACGCGCTGTGTGCGCTGCCCTGCGCGTAGGACCCAAGCGTCCGAGCCA
AGGCTGACTGCCTATGGTCTGGCAGCGAAGAGACGTGGCGCGTGCGCTAG
AGTCAAGCTGTCGTGGTATTTTGTGTTTTAAAATGTGTCTGACTGCTGCT
GCCGCTGTACAGCAGTGTAGTCTACGAGTACGTATCCATGGAGAAGTGCA
CGTCGAGTGCGCTTGTCTTGGTCTCTAGCCCCTAGCCCGCGCCAACCGAC
TGTCGTCTGACCACGGAGGGACGCGCCGACCGCGCGTCGGGCGCGAAGCA
ACGTCGCTATACAGCTGTGTAACCATCCAACTCATCGATCGTTCTGCTGC
TGTTTGCTGTCGTGGATAATGCCATTTTTCGATTTGAAAATCTGATGACC
CAAGTCGTCGGATTTCGGGCCAAAATCCGACGACTTGGGTCATCGGATTC
TCAAAAATCGAAACAATTCCGGTCGGATTATGCATATTTGGACTGCATAA
GCAGGGTCATTCGTTTTCGAGATAAAAAAATATATAAATCTCAAGCTCGA
GATCGAACCGCATATGAAACAGCCTGAGCTCCCAAAAAGGTACAGGACTT
CTGAAATTGGTCGCTTTGCATTTCGGTTCGCGTGTCCCCCTTTTTGATGC
GAACTCCCAGGTGCCGGCGATCAACGTGGCTCTGGTTCTCATCGTGGGTC
TTCTGGTGTACCTGGTCTTGAACGGGGAGTCAAGCATCCACGTATACGTC
ATGGGGTTTCTTGCCGTCGGTCTTATGGCGTCGGTAAATTGGTGAGCCCT
CTGCGGACCATTGCAGTACTCGTACAGCACTCGTACAGCACAGACACAGT
ATGCCATGCAGCGGGCGGAAGCGTATATACAAATATACGGGAGACGGAAC
AAAGAGGGTACCAGGTACACCAGAAGCTGACGGGTGGCAACGTAAAATTA
ACCGCAAAACAACGGAGTACGCCACGCCGAGGGCGGCCGTAAGGGAGACG
AGACAGAGACTATTCGCCACAAGCCGACAAACTGAATTGCAGGACCGGAT
AAAGTCAACTTACTCCACGAAGCTCAACTCGAACAAACCTAACACGCTAC
CACTCTATCCGGAAATGTAGGGACCGTCTGGGTGCAAGTAGGAATGACCA
AACTGTCCTTACATTTCCGAACAGAGCGATGTAAAGTAAGGAACAGGAGG
CTGGGTGAGGCGGCTGAGTGTTTTGTGTGGAATGTTTTTTCAACGCTAAC
GTCAGTATGACGTCTCCCGAATCTCGCTCAGGCTGGATTTCGAATCTTGG
AACAGGTGCGCTCCACACTGCAGTACGCTCAGTACATAACAGCTCTCGAA
TTCTCTGTTTTCTTGATAGTCTCAGCCTGGCCTCCGTAGTGTCCATGTTC
TTATTTGTGCTCGTGTTCGTGTCAACCTTTGTGGGATCCAGATGTATCGC
CCCGTGACGAGGCCAAGTGCGATCTTATCGATAGTTCAGTTGTCGGACGC
GCATCAGCGTACGAGTAGCACCATGCTGTGTGTGCGTGCCGGGTATACCG
AATGAGTAGTTGCGTGGCATCTGTCAGTTCTTCCTGATGTTTTAATCTCA
GTCTTGAGACCTCTCAGTTGCAGCGACCCTTGGTCGCGTAAATGTCACTA
TTTCGCAAAAAACAAAGGTCATATTTGTTTTGGCGCATTCAAAGCATTTT
TTATTGTTTTATTTTCTTTCTTCCTCTCGTCTGTGTTTCTATACGCTTTT
CTTTTCTTCGTTGGAAATGACTCTTACCAGTAACTTCTTTTGGACATCAA
GCGTACAGTAGGGGGTGGGGGAGGTGCACTCATGTCATGCATGGCCGCAG
TCGTACGACCGTAGACCCTCGCATCCCCACAATGCCGGGACGGAGCACGT
CGGGTTTTCACCAACCAGGCAGGCACTGCTTGCACCAAGTGCGAAGCACC
GCTAGCTGCTGTGCGAGCCGCGTGAAGGGTGAGCTGCATCCTACCAGGAA
CCGCCTGTGAGGCGGACTTGCATACGGATGACAGCTTCGAATGAATTGAT
TTGTTTTCTGGTGCGGCCCCTTCCAGTAGGGGGGTGCGTTTTCAGGGCCA
ATTTGTTTAAACAGCCCGGGGCTGCTCGCGCTGCCGGTATAAAGCCGGCA
GGAGAAACATGAGTAATACCACCCCCCCCCCCCCTGCCGTGGGTCGCGTC
AGAGCTACACCCAGTTTTTTTTCTTCAAGCATTTAATGAAGCTTTTTTTG
CACAAGTGGGATCGATGACTCTTAAGGGGTTAAGGTTAGGGCTCCCTACC
GGCTATTTTCACAATAATACTGGGTATATATTACGGTGGGAAAAAATGAC
CAGAACCAAATATGGTTTGTAAAAACAAGGAGATAACATGGTTTTAGTCT
CCGTGATCGGTCTTATTATTACGGAGGGCCATAGTAAATAGGACCATGCA
CAAAAACCTGTATATTTACCCATTTTTTCTAACAATATTTGGTCCTATTT
ACCATGGTCCCCCGTAATACTATTGATACCACACTGGCCGGAAATATCAG
GAAGACTTAGTCAGTAATATGAACACCAAGAGGTCCTTGTTTTTCAGGTC
AGTTGTATGTGATACTATGCGCTCATGGAATAGTGAAAAGTGACCGACGA
GCGCGGCTTCCCCTTGTCTGCCGGCACGATGACTCCCCAGGTTCATATCG
GAGTTTAACAAGGTAAAGCAACAGCAAGAGCAGGACGGGGGAGGCGCACC
TGCAGCAAAGGAGGACGCCGCAGGCCGACAAAAATCGGACTAGAAACGCC
GGTGC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig7076:6336..11340+ >mRNA_M-pyrifera_M_contig7076.16889.1 ID=mRNA_M-pyrifera_M_contig7076.16889.1|Name=mRNA_M-pyrifera_M_contig7076.16889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig7076:6336..11340+ (Macrocystis pyrifera P11B4 male) ATGCCGGCACCTAGTGGAGGAGTAGGTTCATGGCTCGTCGACCTCATCAT GAAGCCCGGAACCTCTGTCCAATTGATGCCGGCACCTAGTGGAGGAGTAG GTTCATGGCTCGTCGACCTCATCATGAAGCCCGGAACCTCTGTCCAATTG GTGCCGGCGATCAACGTGGCTCTGGTTCTCATCGTGGGTCTTCTGGTGTA CCTGGTCTTGAACGGGGAGTCAAGCATCCACGTATACGTCATGGGGTTTC TTGCCGTCGGTCTTATGGCGTCGGTAAATTGGTGCCGGCGATCAACGTGG CTCTGGTTCTCATCGTGGGTCTTCTGGTGTACCTGGTCTTGAACGGGGAG TCAAGCATCCACGTATACGTCATGGGGTTTCTTGCCGTCGGTCTTATGGC GTCGGTAAATTGGTTCATATCGGAGTTTAACAAGGTAAAGCAACAGCAAG AGCAGGACGGGGGAGGCGCACCTGCAGCAAAGGAGGACGCCGCAGGCCGA CAAAAATCGGACTAGGTTCATATCGGAGTTTAACAAGGTAAAGCAACAGC AAGAGCAGGACGGGGGAGGCGCACCTGCAGCAAAGGAGGACGCCGCAGGC CGACAAAAATCGGACTAG back to top
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