mRNA_M-pyrifera_M_contig70667.16870.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70667.16870.1
Unique NamemRNA_M-pyrifera_M_contig70667.16870.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70667.16870.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.940e-9
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:   31 EFRMQKAMSPSGAWKELEDYYMPKTIAATHRLRREFDTIRMAGDENPLLFLGRVDKAADELAMLGCGKSAEEVNRHIVSNLSSLYTIQSKSILS 312
            E  +    S +GAW+ +ED+Y+P   A    L  E D I M+ DE+P LF  RV +   +L  +G  KS +EV R +V  L + Y ++ ++ LS
Sbjct:  178 ENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLS 271
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70667.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LA89_9PHAE3.940e-936.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70667contigM-pyrifera_M_contig70667:262..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.0123994-CDS-M-pyrifera_M_contig70667:261..5761622816600.0123994-CDS-M-pyrifera_M_contig70667:261..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70667 262..576 +
1692278070.0675094-CDS-M-pyrifera_M_contig70667:261..5761692278070.0675094-CDS-M-pyrifera_M_contig70667:261..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70667 262..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70667.16870.1prot_M-pyrifera_M_contig70667.16870.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70667 262..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70667.16870.1

>prot_M-pyrifera_M_contig70667.16870.1 ID=prot_M-pyrifera_M_contig70667.16870.1|Name=mRNA_M-pyrifera_M_contig70667.16870.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MEAMTGYDMAEFRMQKAMSPSGAWKELEDYYMPKTIAATHRLRREFDTIR
MAGDENPLLFLGRVDKAADELAMLGCGKSAEEVNRHIVSNLSSLYTIQSK
SILSR
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mRNA from alignment at M-pyrifera_M_contig70667:262..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70667.16870.1 ID=mRNA_M-pyrifera_M_contig70667.16870.1|Name=mRNA_M-pyrifera_M_contig70667.16870.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig70667:262..576+ (Macrocystis pyrifera P11B4 male)
ATGGAGGCCATGACAGGATACGATATGGCTGAGTTTAGAATGCAAAAGGC
AATGTCTCCGAGTGGTGCTTGGAAGGAGTTGGAAGACTATTACATGCCGA
AGACGATAGCAGCAACACACAGATTGAGGAGGGAGTTTGATACCATCCGA
ATGGCTGGGGATGAAAACCCCTTGCTGTTCCTCGGAAGGGTGGACAAGGC
AGCAGACGAGCTGGCGATGTTAGGATGTGGCAAGAGTGCAGAGGAAGTAA
ACCGACACATTGTTTCCAACCTCTCATCTTTGTATACTATTCAAAGCAAG
TCCATTCTTTCACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70667:262..576+

>mRNA_M-pyrifera_M_contig70667.16870.1 ID=mRNA_M-pyrifera_M_contig70667.16870.1|Name=mRNA_M-pyrifera_M_contig70667.16870.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig70667:262..576+ (Macrocystis pyrifera P11B4 male)
ATGGAGGCCATGACAGGATACGATATGGCTGAGTTTAGAATGCAAAAGGC
AATGTCTCCGAGTGGTGCTTGGAAGGAGTTGGAAGACTATTACATGCCGA
AGACGATAGCAGCAACACACAGATTGAGGAGGGAGTTTGATACCATCCGA
ATGGCTGGGGATGAAAACCCCTTGCTGTTCCTCGGAAGGGTGGACAAGGC
AGCAGACGAGCTGGCGATGTTAGGATGTGGCAAGAGTGCAGAGGAAGTAA
ACCGACACATTGTTTCCAACCTCTCATCTTTGTATACTATTCAAAGCAAG
TCCATTCTTTCACGCATGGAGGCCATGACAGGATACGATATGGCTGAGTT
TAGAATGCAAAAGGCAATGTCTCCGAGTGGTGCTTGGAAGGAGTTGGAAG
ACTATTACATGCCGAAGACGATAGCAGCAACACACAGATTGAGGAGGGAG
TTTGATACCATCCGAATGGCTGGGGATGAAAACCCCTTGCTGTTCCTCGG
AAGGGTGGACAAGGCAGCAGACGAGCTGGCGATGTTAGGATGTGGCAAGA
GTGCAGAGGAAGTAAACCGACACATTGTTTCCAACCTCTCATCTTTGTAT
ACTATTCAAAGCAAGTCCATTCTTTCACGC
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