mRNA_M-pyrifera_M_contig68814.16544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68814.16544.1
Unique NamemRNA_M-pyrifera_M_contig68814.16544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: UPI001BB1F20D (serine/threonine-protein kinase Nek9-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1F20D)

HSP 1 Score: 55.1 bits (131), Expect = 5.450e-7
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   13 LSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDA---------SPLPE--FAEKVVQKIACGDHHVLTIS 228
            L   PV  ++ G  F+A VTD+G L TFG + +  LGRG     ED          +P+    F E+ V KI+CGD+H+L ++
Sbjct:  400 LQGIPVKAVSCGEEFTACVTDEGKLYTFGSDYYGCLGRGEDYEPEDXXXXXXXEVKNPIMVSFFDERPVDKISCGDNHILALT 482          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A0A7M7PSL2_STRPU (Protein kinase domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PSL2_STRPU)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-6
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   13 LSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDA---------SPL--PEFAEKVVQKIACGDHHVLTIS 228
            L   P+  +  G  F+A +TD+G + TFG + +  LGRG     ED          SP+    F E+ V KI+CGD+H+L ++
Sbjct:  399 LQGIPIKAVGCGEEFTACITDEGQVYTFGSDYYGCLGRGEDYEPEDXXXXXXXXVKSPILVSFFNERPVNKISCGDNHILALT 481          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A0A5N6NPU5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NPU5_9ASTR)

HSP 1 Score: 52.8 bits (125), Expect = 3.430e-6
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   25 PVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASPLPEFAEKVVQKIACGDHHVLTISD 231
            PV  +A G  F+ ++T+ GHL ++G N    LGRGN +      P+P      V +IA G +H L ++D
Sbjct:  248 PVVSVACGGFFTTVITNDGHLWSWGANSNNELGRGNRVGGWKPQPIPGLEGVSVIQIASGGYHSLALTD 316          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A0A498IG32_MALDO (Uncharacterized protein n=14 Tax=Maleae TaxID=721813 RepID=A0A498IG32_MALDO)

HSP 1 Score: 52.0 bits (123), Expect = 6.470e-6
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   28 VTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASPLPEFAEKVVQKIACGDHHVLTIS 228
            V +IA G   SA++TD G L+TFGW  +   G+GN +     S +   +E  V+ IA G  H L +S
Sbjct:  305 VKEIACGGRHSAVITDAGALLTFGWGLYGQCGQGNTIDQLRPSYVKSLSETKVKNIAAGLWHTLCVS 371          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A7SKU3_NEMVE (Predicted protein (Fragment) n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKU3_NEMVE)

HSP 1 Score: 52.0 bits (123), Expect = 6.550e-6
Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   13 LSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASP--LPEFAEKVVQKIACGDHHVLTI 225
            L   P+ ++A G  F+A +TD G L TFG + F  +G  N L  E   P  +  F +K V+ I+CGD HV+ +
Sbjct:  384 LFGIPIKKVACGDEFTACITDDGALYTFGSDYFGCIGCSNELDEEVLLPHKVTFFNDKPVEDISCGDCHVVVM 456          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: UPI0009E3FA21 (serine/threonine-protein kinase Nek9-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3FA21)

HSP 1 Score: 52.0 bits (123), Expect = 6.660e-6
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   28 VTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASP--LPEFAEKVVQKIACGDHHVLTIS 228
            + Q+A G  F+A VT++G L TFG + +  +G  N L  E A+P  +  FAE  V ++ACG+ H++ ++
Sbjct:  390 IKQVACGDEFTACVTEEGVLYTFGSDYWGCIGCNNELDEEVATPYRVEFFAENPVSQVACGECHIVALT 458          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: UPI00077A13DE (serine/threonine-protein kinase Nek9-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A13DE)

HSP 1 Score: 50.8 bits (120), Expect = 9.510e-6
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   13 LSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASP--LPEFAEKVVQKIACGDHHVLTIS 228
            L   P+ Q+A G  F+A +T+ G L TFG + +  +G  N L  +   P  +  FAE  V ++ACG+ H++ I+
Sbjct:   89 LHGIPIKQVACGDEFTACITEDGVLYTFGSDYWGCIGCNNELDEDVTLPFRVDFFAENPVAEVACGECHIVVIT 162          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: L8GN81_ACACA (Regulator of chromosome condensation (RCC1) repeat domain containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GN81_ACACA)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    1 MQGPLSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASPLPEFAEKV--VQKIACGDHHVLTIS 228
            M G  S+  VT IAAG   SA+VT +GHL+T G   F  LG G++      + +   AE    V ++ACG  H + ++
Sbjct:   88 MAGLHSSIVVTCIAAGMRHSALVTQEGHLLTLGHGKFGELGHGDLATRSTPTLVAHLAESRLRVAQVACGQKHTVCLT 165          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A0A5N5H2F8_9ROSA (Ultraviolet-B receptor UVR8-like n=11 Tax=Maleae TaxID=721813 RepID=A0A5N5H2F8_9ROSA)

HSP 1 Score: 51.2 bits (121), Expect = 1.190e-5
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 1
Query:   28 VTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASPLPEFAEKVVQKIACGDHHVLTISD 231
            V +IA G   SA+VTD G L+TFGW  +   G+GN       S L   +   V+ IA G  H L ISD
Sbjct:  227 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGQGNTNDQLRPSYLNSLSGTKVKNIAAGLWHTLCISD 294          
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Match: A0A6P4D7I3_ARADU (ultraviolet-B receptor UVR8 isoform X1 n=9 Tax=Arachis TaxID=3817 RepID=A0A6P4D7I3_ARADU)

HSP 1 Score: 51.2 bits (121), Expect = 1.210e-5
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 1
Query:   28 VTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASEDASPLPEFAEKVVQKIACGDHHVLTIS 228
            V +IA G   SA+VTD G L+TFGW  +   G+GN       + +P      V+KIA G  H L ++
Sbjct:  314 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGQGNNADQLRPTLVPSLLSTTVEKIAAGLWHTLCVT 380          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68814.16544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI001BB1F20D5.450e-737.35serine/threonine-protein kinase Nek9-like isoform ... [more]
A0A7M7PSL2_STRPU1.020e-634.94Protein kinase domain-containing protein n=2 Tax=S... [more]
A0A5N6NPU5_9ASTR3.430e-636.23Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A498IG32_MALDO6.470e-638.81Uncharacterized protein n=14 Tax=Maleae TaxID=7218... [more]
A7SKU3_NEMVE6.550e-638.36Predicted protein (Fragment) n=4 Tax=Nematostella ... [more]
UPI0009E3FA216.660e-637.68serine/threonine-protein kinase Nek9-like n=1 Tax=... [more]
UPI00077A13DE9.510e-635.14serine/threonine-protein kinase Nek9-like n=1 Tax=... [more]
L8GN81_ACACA1.110e-537.18Regulator of chromosome condensation (RCC1) repeat... [more]
A0A5N5H2F8_9ROSA1.190e-542.65Ultraviolet-B receptor UVR8-like n=11 Tax=Maleae T... [more]
A0A6P4D7I3_ARADU1.210e-538.81ultraviolet-B receptor UVR8 isoform X1 n=9 Tax=Ara... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68814contigM-pyrifera_M_contig68814:843..1073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.341222-CDS-M-pyrifera_M_contig68814:842..10731622816580.341222-CDS-M-pyrifera_M_contig68814:842..1073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68814 843..1073 -
1692278058.5739276-CDS-M-pyrifera_M_contig68814:842..10731692278058.5739276-CDS-M-pyrifera_M_contig68814:842..1073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68814 843..1073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68814.16544.1prot_M-pyrifera_M_contig68814.16544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68814 843..1073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68814.16544.1

>prot_M-pyrifera_M_contig68814.16544.1 ID=prot_M-pyrifera_M_contig68814.16544.1|Name=mRNA_M-pyrifera_M_contig68814.16544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MQGPLSNAPVTQIAAGPLFSAIVTDQGHLITFGWNDFAVLGRGNVLASED
ASPLPEFAEKVVQKIACGDHHVLTISD
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mRNA from alignment at M-pyrifera_M_contig68814:843..1073-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68814.16544.1 ID=mRNA_M-pyrifera_M_contig68814.16544.1|Name=mRNA_M-pyrifera_M_contig68814.16544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig68814:843..1073- (Macrocystis pyrifera P11B4 male)
ATGCAAGGACCGCTCTCCAACGCACCAGTCACTCAAATCGCAGCAGGTCC GCTCTTTTCTGCCATTGTAACAGACCAAGGCCATCTCATCACTTTCGGGT GGAATGATTTCGCTGTGCTGGGAAGAGGAAACGTCCTTGCTTCCGAAGAT GCTTCTCCTCTCCCCGAATTTGCCGAAAAAGTCGTCCAAAAGATCGCGTG TGGAGACCACCATGTGCTCACCATCTCAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68814:843..1073-

>mRNA_M-pyrifera_M_contig68814.16544.1 ID=mRNA_M-pyrifera_M_contig68814.16544.1|Name=mRNA_M-pyrifera_M_contig68814.16544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig68814:843..1073- (Macrocystis pyrifera P11B4 male)
ATGCAAGGACCGCTCTCCAACGCACCAGTCACTCAAATCGCAGCAGGTCC
GCTCTTTTCTGCCATTGTAACAGACCAAGGCCATCTCATCACTTTCGGGT
GGAATGATTTCGCTGTGCTGGGAAGAGGAAACGTCCTTGCTTCCGAAGAT
GCTTCTCCTCTCCCCGAATTTGCCGAAAAAGTCGTCCAAAAGATCGCGTG
TGGAGACCACCATGTGCTCACCATCTCAGACATGCAAGGACCGCTCTCCA
ACGCACCAGTCACTCAAATCGCAGCAGGTCCGCTCTTTTCTGCCATTGTA
ACAGACCAAGGCCATCTCATCACTTTCGGGTGGAATGATTTCGCTGTGCT
GGGAAGAGGAAACGTCCTTGCTTCCGAAGATGCTTCTCCTCTCCCCGAAT
TTGCCGAAAAAGTCGTCCAAAAGATCGCGTGTGGAGACCACCATGTGCTC
ACCATCTCAGAC
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