mRNA_M-pyrifera_M_contig68520.16484.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68520.16484.1
Unique NamemRNA_M-pyrifera_M_contig68520.16484.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: D8LLY2_ECTSI (30S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY2_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 2.840e-78
Identity = 137/171 (80.12%), Postives = 151/171 (88.30%), Query Frame = 1
Query:    1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRE------TDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
            V+ S++IG  VRVR+LEAD ++RKLRLTMRE      T  +M   XXXXXDRRG KKAKSVEQFLNLSPEEWI G VASIT+FGAFVAVD DTDGLLHISQIAE+HVSNVEDHLQ+GQ+VQVRVIEVDVDNCRLGLSMREPRQ++PRG+RGKKDVSVLLGRDPDEFI GRV
Sbjct:  444 VYNSVEIGQDVRVRILEADPSSRKLRLTMREEGYEGATGGNMGXXXXXXXDRRGTKKAKSVEQFLNLSPEEWISGRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQNSPRGARGKKDVSVLLGRDPDEFIPGRV 614          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A836CHC1_9STRA (30S ribosomal protein S1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.390e-27
Identity = 68/165 (41.21%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   13 MQIGDPVRVRVLEADLNARKLRLTMRETDVD--MPSGXXXXXDRRGM--KKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
            + +GD V+VRV+E    ARK+RL+MRE       P G      RRG   +  K V  +  +  EEW+ G V S T FGAFVA+    DGLLH+S++A   V   +D L  GQ+++VRVI+VD +  R+GLS+R+ R++        +D+SVL G D   F+ G V
Sbjct:  400 LNVGDAVKVRVIEVVPAARKVRLSMREFGAAEAAPRGAASGGARRGRGARGPKDVSAYAAMGAEEWVEGKVVSFTPFGAFVALPGGVDGLLHVSEMASGRVEAPQDVLSEGQEIKVRVIDVDTEAGRIGLSLRQARRAPV-----SRDLSVLAGVDTTAFVPGTV 559          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S3WNP8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WNP8_9SPIT)

HSP 1 Score: 103 bits (256), Expect = 6.520e-24
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   70 KLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADT-----DGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
            KL L M E+ +    G      RRG         FL ++ +EW+ GTV+SI  FG FV V         DGL+HI+QI +  V NVED ++ GQ+++VRV +VD+D  +LGLSM+EP  S   GSR   D++   G  P+E+++G+V
Sbjct:   92 KLGLAMLESKIRSGGGA-----RRG---PADYSPFLEVAEDEWLTGTVSSIVPFGIFVTVTPPNGGNPVDGLVHITQIRDGFVENVEDEVEQGQEIRVRVTQVDMDRNKLGLSMKEPGGSRGGGSRAPADLTPFEGIGPEEWLSGKV 230          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S4S8E1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S8E1_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 5.160e-22
Identity = 54/139 (38.85%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVD----ADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREP 405
            V   + +G  ++VR+   DL   KL L+M+E  +  PSG        G +    +  F   +  EW+ GTVA    FGAFV V     A  DGL+HI+QI +  V +VED ++VGQ+VQVRV+ VD +  ++ LSM+ P
Sbjct:   18 VEDELSLGQEIKVRIESVDLERGKLSLSMKEPGMGRPSGGG------GGRGPADLSAFEGRNSNEWLTGTVARTAPFGAFVTVKLEDGAQADGLVHITQIKDGFVESVEDEVEVGQEVQVRVVSVDTEAGKMSLSMKPP 150          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S2XXC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXC4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.910e-21
Identity = 46/112 (41.07%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  154 AKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDAD-TDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFIT 486
            A+++E++ +L P++++ G V SI  FGAFV ++    DG++HISQI+++ V N+ED LQVG +V+VR+++VD    ++ LSM  PR+     +RG +DVS     DP+ ++T
Sbjct:    1 AEALERYSSLGPDDFVSGKVVSILGFGAFVQLEGSPVDGMVHISQISKDRVDNIEDVLQVGDEVEVRILDVDNGRGKVSLSM-VPRRVGGTSTRGNEDVSKYANFDPNAYVT 111          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S2GF55_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GF55_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 8.720e-21
Identity = 63/169 (37.28%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDA----DTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
            V   + IG+ V+VRV+  DL   KL L+M+E     P          G     S+E F++  P E++ G V +I  FGAFV V A      DGL+H S I E  V N ++ LQ GQ+V+VRV+ VD+   R+ LSM+ PR           DVS      PD+++ G V
Sbjct:   42 VEDELSIGEAVKVRVISVDLEGHKLGLSMKE-----PGKKGGRFVAPG-----SLEAFVSQPPNEFLPGKVMTIMPFGAFVTVTARDGTKADGLVHKSDIKESFVRNAQEVLQEGQEVEVRVLSVDLKKSRMSLSMKRPRT----------DVSRFADIPPDKWLNGMV 190          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A812SBN0_9DINO (RpsA protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SBN0_9DINO)

HSP 1 Score: 96.3 bits (238), Expect = 3.110e-20
Identity = 54/125 (43.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  133 DRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVD----ADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
            D  G +    +  F +LSP+EW  G V+    FGAFV V     A  DGL+H+SQI +  V NV+D L  GQ+VQVRV  VDVD  R+ LSMR        G R   D+S       DE++TG+V
Sbjct:  275 DAGGRRAPADLTPFQDLSPDEWQKGVVSRTAPFGAFVTVTLEGGASADGLVHVSQIKDGFVDNVDDELSAGQEVQVRVQSVDVDAGRMSLSMRSGXXXXXXGFREPADLSAFEAISSDEWLTGKV 399          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A0M8KAN0_9CHLR (Small subunit ribosomal protein S1 n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAN0_9CHLR)

HSP 1 Score: 94.4 bits (233), Expect = 3.650e-20
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   22 GDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQS 414
            GD V V V E DL  +++ LTM + +    S       +  ++  +  ++F          G V SI +FGAFV + A+TDGL+HIS+++EE V+ VED ++VGQ+V+VR+I +D    R+ LSMREPR++
Sbjct:  129 GDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFT---------GIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRVEDVVEVGQEVKVRIIGIDRKRKRISLSMREPREA 250          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: F0YMT3_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMT3_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 6.680e-20
Identity = 56/156 (35.90%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   22 GDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQ--SAPRGSR---GKKDVSVLLGRDPD 474
            GD V VR+L+ D   ++L L+M+    + P  XXXXX       A+ + ++ +  P E+I GTV ++  +GAFV +    DGL+HIS++++  V +++  L VG +V+VR+I+VD+D   LGL+M   R   + PR  R   G +  +    R+PD
Sbjct:  115 GDDVTVRILKIDSGKKQLSLSMKPEGAEAPPKXXXXXXXXXKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLAMNTYRDPTAPPRPGRDDAGGESAAARRARNPD 270          
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A6T1J5M8_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1J5M8_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 1.680e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  142 GMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAV----DADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQS 414
            G +    +  F  L P+EW+ GTVA  T FGAFV V     A  DGL+HI+QI +  V +V+D + VGQ+VQVRV++VDV+  ++GLSM+ P  S
Sbjct:    8 GGRAPADLSAFAGLHPDEWLKGTVARTTPFGAFVTVALKDGAQADGLVHITQIKDGFVESVDDEVSVGQEVQVRVVKVDVEAGKMGLSMKSPEWS 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY2_ECTSI2.840e-7880.1230S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CHC1_9STRA2.390e-2741.2130S ribosomal protein S1 n=1 Tax=Tribonema minus T... [more]
A0A7S3WNP8_9SPIT6.520e-2440.82Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4S8E1_9DINO5.160e-2238.85Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2XXC4_9STRA4.910e-2141.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GF55_9DINO8.720e-2137.28Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812SBN0_9DINO3.110e-2043.20RpsA protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A0M8KAN0_9CHLR3.650e-2039.69Small subunit ribosomal protein S1 n=2 Tax=Ardenti... [more]
F0YMT3_AURAN6.680e-2035.90Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A6T1J5M8_9DINO1.680e-1947.37Hypothetical protein n=3 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68520contigM-pyrifera_M_contig68520:175..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog2880.D8LLY2
KEGG koko:K02357,ko:K14792
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,COG0539@1,KOG1070@2759,KOG1071@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03012,ko03029
Exons1
Model size495
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.2514274-CDS-M-pyrifera_M_contig68520:174..6571622816577.2514274-CDS-M-pyrifera_M_contig68520:174..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68520 175..657 -
1692278057.1159213-CDS-M-pyrifera_M_contig68520:174..6571692278057.1159213-CDS-M-pyrifera_M_contig68520:174..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68520 175..657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.264288-UTR-M-pyrifera_M_contig68520:657..6691622816577.264288-UTR-M-pyrifera_M_contig68520:657..669Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68520 658..669 -
1692278057.1425056-UTR-M-pyrifera_M_contig68520:657..6691692278057.1425056-UTR-M-pyrifera_M_contig68520:657..669Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68520 658..669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68520.16484.1prot_M-pyrifera_M_contig68520.16484.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68520 175..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68520.16484.1

>prot_M-pyrifera_M_contig68520.16484.1 ID=prot_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGGGGGGDRRGMKKAKS
VEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNV
EDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLG
RDPDEFITGRV
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mRNA from alignment at M-pyrifera_M_contig68520:175..669-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68520.16484.1 ID=mRNA_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig68520:175..669- (Macrocystis pyrifera P11B4 male)
GTTCATCGGTCCATGCAGATCGGTGACCCCGTACGCGTTCGCGTGTTGGA AGCGGACCTGAACGCCAGGAAGCTGCGCCTCACGATGAGGGAGACCGATG TCGACATGCCCTCCGGGGGCGGGGGCGGCGGCGACCGCCGGGGCATGAAG AAGGCGAAGTCGGTTGAGCAGTTCCTCAACCTCTCCCCCGAGGAGTGGAT CGGGGGCACCGTCGCCTCCATCACCAACTTCGGCGCCTTCGTGGCGGTGG ACGCGGACACCGACGGCCTCCTGCACATCTCCCAGATCGCGGAGGAGCAC GTGAGCAACGTGGAGGACCACCTGCAGGTGGGGCAGGACGTCCAGGTGCG CGTGATCGAGGTGGACGTGGACAACTGCCGGCTCGGGCTGAGCATGAGGG AGCCGCGCCAGTCGGCGCCGCGAGGATCCCGCGGGAAGAAGGACGTGAGC GTCCTGCTCGGACGCGACCCGGATGAGTTCATCACCGGACGAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68520:175..669-

>mRNA_M-pyrifera_M_contig68520.16484.1 ID=mRNA_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig68520:175..669- (Macrocystis pyrifera P11B4 male)
ATGCAGATCGGTGACCCCGTACGCGTTCGCGTGTTGGAAGCGGACCTGAA
CGCCAGGAAGCTGCGCCTCACGATGAGGGAGACCGATGTCGACATGCCCT
CCGGGGGCGGGGGCGGCGGCGACCGCCGGGGCATGAAGAAGGCGAAGTCG
GTTGAGCAGTTCCTCAACCTCTCCCCCGAGGAGTGGATCGGGGGCACCGT
CGCCTCCATCACCAACTTCGGCGCCTTCGTGGCGGTGGACGCGGACACCG
ACGGCCTCCTGCACATCTCCCAGATCGCGGAGGAGCACGTGAGCAACGTG
GAGGACCACCTGCAGGTGGGGCAGGACGTCCAGGTGCGCGTGATCGAGGT
GGACGTGGACAACTGCCGGCTCGGGCTGAGCATGAGGGAGCCGCGCCAGT
CGGCGCCGCGAGGATCCCGCGGGAAGAAGGACGTGAGCGTCCTGCTCGGA
CGCGACCCGGATGAGTTCATCACCGGACGAGTGATGCAGATCGGTGACCC
CGTACGCGTTCGCGTGTTGGAAGCGGACCTGAACGCCAGGAAGCTGCGCC
TCACGATGAGGGAGACCGATGTCGACATGCCCTCCGGGGGCGGGGGCGGC
GGCGACCGCCGGGGCATGAAGAAGGCGAAGTCGGTTGAGCAGTTCCTCAA
CCTCTCCCCCGAGGAGTGGATCGGGGGCACCGTCGCCTCCATCACCAACT
TCGGCGCCTTCGTGGCGGTGGACGCGGACACCGACGGCCTCCTGCACATC
TCCCAGATCGCGGAGGAGCACGTGAGCAACGTGGAGGACCACCTGCAGGT
GGGGCAGGACGTCCAGGTGCGCGTGATCGAGGTGGACGTGGACAACTGCC
GGCTCGGGCTGAGCATGAGGGAGCCGCGCCAGTCGGCGCCGCGAGGATCC
CGCGGGAAGAAGGACGTGAGCGTCCTGCTCGGACGCGACCCGGATGAGTT
CATCACCGGACGAGTG
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