mRNA_M-pyrifera_M_contig68520.16484.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: D8LLY2_ECTSI (30S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY2_ECTSI) HSP 1 Score: 256 bits (653), Expect = 2.840e-78 Identity = 137/171 (80.12%), Postives = 151/171 (88.30%), Query Frame = 1
Query: 1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRE------TDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
V+ S++IG VRVR+LEAD ++RKLRLTMRE T +M XXXXXDRRG KKAKSVEQFLNLSPEEWI G VASIT+FGAFVAVD DTDGLLHISQIAE+HVSNVEDHLQ+GQ+VQVRVIEVDVDNCRLGLSMREPRQ++PRG+RGKKDVSVLLGRDPDEFI GRV
Sbjct: 444 VYNSVEIGQDVRVRILEADPSSRKLRLTMREEGYEGATGGNMGXXXXXXXDRRGTKKAKSVEQFLNLSPEEWISGRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMREPRQNSPRGARGKKDVSVLLGRDPDEFIPGRV 614
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A836CHC1_9STRA (30S ribosomal protein S1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC1_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.390e-27 Identity = 68/165 (41.21%), Postives = 96/165 (58.18%), Query Frame = 1
Query: 13 MQIGDPVRVRVLEADLNARKLRLTMRETDVD--MPSGXXXXXDRRGM--KKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
+ +GD V+VRV+E ARK+RL+MRE P G RRG + K V + + EEW+ G V S T FGAFVA+ DGLLH+S++A V +D L GQ+++VRVI+VD + R+GLS+R+ R++ +D+SVL G D F+ G V
Sbjct: 400 LNVGDAVKVRVIEVVPAARKVRLSMREFGAAEAAPRGAASGGARRGRGARGPKDVSAYAAMGAEEWVEGKVVSFTPFGAFVALPGGVDGLLHVSEMASGRVEAPQDVLSEGQEIKVRVIDVDTEAGRIGLSLRQARRAPV-----SRDLSVLAGVDTTAFVPGTV 559
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S3WNP8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WNP8_9SPIT) HSP 1 Score: 103 bits (256), Expect = 6.520e-24 Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 70 KLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADT-----DGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
KL L M E+ + G RRG FL ++ +EW+ GTV+SI FG FV V DGL+HI+QI + V NVED ++ GQ+++VRV +VD+D +LGLSM+EP S GSR D++ G P+E+++G+V
Sbjct: 92 KLGLAMLESKIRSGGGA-----RRG---PADYSPFLEVAEDEWLTGTVSSIVPFGIFVTVTPPNGGNPVDGLVHITQIRDGFVENVEDEVEQGQEIRVRVTQVDMDRNKLGLSMKEPGGSRGGGSRAPADLTPFEGIGPEEWLSGKV 230
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S4S8E1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S8E1_9DINO) HSP 1 Score: 95.5 bits (236), Expect = 5.160e-22 Identity = 54/139 (38.85%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVD----ADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREP 405
V + +G ++VR+ DL KL L+M+E + PSG G + + F + EW+ GTVA FGAFV V A DGL+HI+QI + V +VED ++VGQ+VQVRV+ VD + ++ LSM+ P
Sbjct: 18 VEDELSLGQEIKVRIESVDLERGKLSLSMKEPGMGRPSGGG------GGRGPADLSAFEGRNSNEWLTGTVARTAPFGAFVTVKLEDGAQADGLVHITQIKDGFVESVEDEVEVGQEVQVRVVSVDTEAGKMSLSMKPP 150
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S2XXC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXC4_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.910e-21 Identity = 46/112 (41.07%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 154 AKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDAD-TDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFIT 486
A+++E++ +L P++++ G V SI FGAFV ++ DG++HISQI+++ V N+ED LQVG +V+VR+++VD ++ LSM PR+ +RG +DVS DP+ ++T
Sbjct: 1 AEALERYSSLGPDDFVSGKVVSILGFGAFVQLEGSPVDGMVHISQISKDRVDNIEDVLQVGDEVEVRILDVDNGRGKVSLSM-VPRRVGGTSTRGNEDVSKYANFDPNAYVT 111
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A7S2GF55_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GF55_9DINO) HSP 1 Score: 94.0 bits (232), Expect = 8.720e-21 Identity = 63/169 (37.28%), Postives = 87/169 (51.48%), Query Frame = 1
Query: 1 VHRSMQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDA----DTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
V + IG+ V+VRV+ DL KL L+M+E P G S+E F++ P E++ G V +I FGAFV V A DGL+H S I E V N ++ LQ GQ+V+VRV+ VD+ R+ LSM+ PR DVS PD+++ G V
Sbjct: 42 VEDELSIGEAVKVRVISVDLEGHKLGLSMKE-----PGKKGGRFVAPG-----SLEAFVSQPPNEFLPGKVMTIMPFGAFVTVTARDGTKADGLVHKSDIKESFVRNAQEVLQEGQEVEVRVLSVDLKKSRMSLSMKRPRT----------DVSRFADIPPDKWLNGMV 190
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A812SBN0_9DINO (RpsA protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SBN0_9DINO) HSP 1 Score: 96.3 bits (238), Expect = 3.110e-20 Identity = 54/125 (43.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 133 DRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVD----ADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQSAPRGSRGKKDVSVLLGRDPDEFITGRV 495
D G + + F +LSP+EW G V+ FGAFV V A DGL+H+SQI + V NV+D L GQ+VQVRV VDVD R+ LSMR G R D+S DE++TG+V
Sbjct: 275 DAGGRRAPADLTPFQDLSPDEWQKGVVSRTAPFGAFVTVTLEGGASADGLVHVSQIKDGFVDNVDDELSAGQEVQVRVQSVDVDAGRMSLSMRSGXXXXXXGFREPADLSAFEAISSDEWLTGKV 399
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A0M8KAN0_9CHLR (Small subunit ribosomal protein S1 n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAN0_9CHLR) HSP 1 Score: 94.4 bits (233), Expect = 3.650e-20 Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 22 GDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQS 414
GD V V V E DL +++ LTM + + S + ++ + ++F G V SI +FGAFV + A+TDGL+HIS+++EE V+ VED ++VGQ+V+VR+I +D R+ LSMREPR++
Sbjct: 129 GDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFT---------GIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRVEDVVEVGQEVKVRIIGIDRKRKRISLSMREPREA 250
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: F0YMT3_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMT3_AURAN) HSP 1 Score: 94.0 bits (232), Expect = 6.680e-20 Identity = 56/156 (35.90%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 22 GDPVRVRVLEADLNARKLRLTMRETDVDMPSGXXXXXDRRGMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAVDADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQ--SAPRGSR---GKKDVSVLLGRDPD 474
GD V VR+L+ D ++L L+M+ + P XXXXX A+ + ++ + P E+I GTV ++ +GAFV + DGL+HIS++++ V +++ L VG +V+VR+I+VD+D LGL+M R + PR R G + + R+PD
Sbjct: 115 GDDVTVRILKIDSGKKQLSLSMKPEGAEAPPKXXXXXXXXXKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLAMNTYRDPTAPPRPGRDDAGGESAAARRARNPD 270
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Match: A0A6T1J5M8_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1J5M8_9DINO) HSP 1 Score: 87.8 bits (216), Expect = 1.680e-19 Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 142 GMKKAKSVEQFLNLSPEEWIGGTVASITNFGAFVAV----DADTDGLLHISQIAEEHVSNVEDHLQVGQDVQVRVIEVDVDNCRLGLSMREPRQS 414
G + + F L P+EW+ GTVA T FGAFV V A DGL+HI+QI + V +V+D + VGQ+VQVRV++VDV+ ++GLSM+ P S
Sbjct: 8 GGRAPADLSAFAGLHPDEWLKGTVARTTPFGAFVTVALKDGAQADGLVHITQIKDGFVESVDDEVSVGQEVQVRVVKVDVEAGKMGLSMKSPEWS 102 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68520.16484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig68520.16484.1 >prot_M-pyrifera_M_contig68520.16484.1 ID=prot_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp MQIGDPVRVRVLEADLNARKLRLTMRETDVDMPSGGGGGGDRRGMKKAKSback to top mRNA from alignment at M-pyrifera_M_contig68520:175..669- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig68520.16484.1 ID=mRNA_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig68520:175..669- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig68520:175..669- >mRNA_M-pyrifera_M_contig68520.16484.1 ID=mRNA_M-pyrifera_M_contig68520.16484.1|Name=mRNA_M-pyrifera_M_contig68520.16484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig68520:175..669- (Macrocystis pyrifera P11B4 male)back to top |