mRNA_M-pyrifera_M_contig68497.16480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68497.16480.1
Unique NamemRNA_M-pyrifera_M_contig68497.16480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A812XWB5_9DINO (HelA protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XWB5_9DINO)

HSP 1 Score: 258 bits (660), Expect = 1.130e-76
Identity = 146/166 (87.95%), Postives = 150/166 (90.36%), Query Frame = 1
Query:    1 KTDMNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNHEGHNHGEDXXXXXXXXXXXPDAHGSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGS 498
            KTDMNNLTKLLL STI G LFLGGCG ESEAP TDSHLDHDNHEGHNHGE XXXXXXXXXXX    GSE ELG VTIAGTTLSVNMGGDLKPGAVMHLDIK TDGPEP+AIRVWIGD+AATGALK KATG+GGDYHAEAEAPAELMPDAAVWIEIETA  SRETG+
Sbjct: 4547 KTDMNNLTKLLLASTIIGPLFLGGCGNESEAPGTDSHLDHDNHEGHNHGEXXXXXXXXXXXXXXXXGSEDELGFVTIAGTTLSVNMGGDLKPGAVMHLDIKTTDGPEPIAIRVWIGDRAATGALKRKATGNGGDYHAEAEAPAELMPDAAVWIEIETADDSRETGT 4712          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A3D4UIM1_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UIM1_9BACT)

HSP 1 Score: 219 bits (559), Expect = 1.280e-70
Identity = 125/167 (74.85%), Postives = 140/167 (83.83%), Query Frame = 1
Query:   10 MNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNHEGHNHGEDXXXXXXXXXXXPDAHGSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISID 510
            MNNLTKLLL STITG+LFLGGC  ESEAPDTDSHLDHDNHEGH+HG+DXXXXXXXXXXX    GSE +LGSVTIAGTTLSV MG D++PGAVMHLDI+ T GPEPVAIRVWIGD+AATG LK KA  +  DYHAE E P+EL P  ++WIEIETA G R +G+I I+
Sbjct:    1 MNNLTKLLLASTITGMLFLGGCSNESEAPDTDSHLDHDNHEGHDHGDDXXXXXXXXXXXXXXXGSEYDLGSVTIAGTTLSVKMGEDIEPGAVMHLDIETTAGPEPVAIRVWIGDQAATGTLKSKAMWNSVDYHAEVEVPSELRPGLSLWIEIETADGERASGAIPIN 167          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A2E2N5L6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N5L6_9BACT)

HSP 1 Score: 163 bits (412), Expect = 3.650e-48
Identity = 100/177 (56.50%), Postives = 125/177 (70.62%), Query Frame = 1
Query:   10 MNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNHEGHNHGEDXXXXXXXXXXXPDAH----------GSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISID 510
            M +LTKL LVS     L L GCG ES + +     +H +H+GH+H  + XXXXXXXXXX              G+E +LGSVTIAGTT  V+MGG+++P A +HLDI+ TDGPEP AIRVWIGD+A TGALK KA GS GDYHA+AEAPA +    ++WIEIETA G+RE+GSI+I+
Sbjct:    1 MTDLTKLFLVSLAAASLTLSGCGNESGSSNAAGQSEHSDHDGHDHDAEGXXXXXXXXXXXXXXXXXXXXXXXXGAERDLGSVTIAGTTYRVSMGGEIEPSATVHLDIERTDGPEPAAIRVWIGDEAGTGALKSKAMGSSGDYHADAEAPANVSLPTSLWIEIETANGTRESGSININ 177          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A7Z9PTJ5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PTJ5_9BACT)

HSP 1 Score: 127 bits (318), Expect = 5.670e-35
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  223 VTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISID 510
            +TIA  TLSVNM GDLKPGAV+HLDI+ T GP+PVA+RVWIGD+AATG LK KA  +  DYHAE E P+EL PD ++W+EI+ A G R +G+I I+
Sbjct:    1 MTIADATLSVNMSGDLKPGAVLHLDIETTAGPDPVAVRVWIGDQAATGTLKSKAMWNSMDYHAEVEVPSELRPDYSIWLEIKAADGERASGAIPIN 96          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A7X0H4E0_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H4E0_9BACT)

HSP 1 Score: 114 bits (286), Expect = 2.260e-29
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   10 MNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNH-EGHNHGEDXXXXXXXXXXXPDAHGSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISID 510
            M  L KLLL   +TG   L GCG        +SH DHD   E H+  +D            D H ++  LG + IAG  L V++GG+  P   +HLDI+    P P AIR WIGD++ATG++K KA GSGGDYHA+   PA+      +WIE E + G R TG +S++
Sbjct:    1 MTILMKLLLAPALTGTFLLTGCG--------ESHDDHDXXXEQHSEVDDHANEVK------DEHDADHGLGQIEIAGLVLEVSVGGEPGPNVTLHLDIEVKGEPTPEAIRAWIGDESATGSVKSKAFGSGGDYHADVTCPADFDEGGILWIECENSEGVRITGQLSLE 154          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A518CVU9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CVU9_9BACT)

HSP 1 Score: 113 bits (283), Expect = 7.770e-29
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  196 HGSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSIS 504
            H +E  LG V++  +T SV +GGD++PGA +H+DI  T G EP AIRVWIGD + +G+LKGKA  SG  +H +AE P+ + P +A+WIE+E   GSR TGSI+
Sbjct:   61 HTAERSLGVVSVGASTFSVAIGGDIEPGASVHVDIDHTAGAEPAAIRVWIGDASGSGSLKGKAVASGDTFHGDAEVPSPMAPGSALWIEVEARDGSRATGSIA 163          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A2E2N5U2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N5U2_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.430e-19
Identity = 70/178 (39.33%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    1 KTDMNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNHEGHNHGEDXXXXXXXXXXXP-------DAHGSEG--ELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISI 507
            KT  +++  L + + ++  L L GCG        D H DHD    H H   XXXXXXX            D HG E   E+G+V I G+TL V +GG L  G    +D+    G  P A+R+WIGD+AATG +K KA G GG +HA  E P+ +   A +W+E+E A G R   S+ I
Sbjct:    2 KTFSHSVVVLGIAAAVSVGLVLSGCGEAGSTTGAD-HGDHD----HAHXXXXXXXXXXDGGQEHVSGGGVDTHGHEETREVGTVEIGGSTLRVAVGGALIAGGEAQVDVTVGGGETPTALRLWIGDRAATGTIKTKADGGGGGFHAHVEVPSNVDGMAVLWVEVEQADGERLAESLPI 174          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A7Z9IHK4_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9IHK4_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 5.240e-15
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  220 SVTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSI 501
            ++T+AG TL V + G + P A++ + I  T G    AIR+W+GD++  G++K K    G   HA  +APA+L   +AVW+E++T  G +E+G I
Sbjct:   64 TITLAGITLEVTVQGTIAPTAMLDVSILQTAGGHASAIRLWVGDESGVGSIKTKTHSHGAASHAHVQAPAKLPVGSAVWVEVQTPSGEKESGKI 157          
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Match: A0A2E5UEP1_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5UEP1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 9.070e-14
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  223 VTIAGTTLSVNMGGDLKPGAVMHLDIKATDGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWIEIETAIGSRETGSISI 507
            +T+A   L +   GD  PG+ + + +++  G  P  IRVW+G ++  G+ K K    G  YHA A  P+ L   +A+WIE++T  G +E+GSI +
Sbjct:   85 LTLANVALEIRFRGDGTPGSELDVSLRSVGGDRPATIRVWVGVESGKGSRKTKVHSHGATYHAHAHVPSNLPEGSALWIEVQTVNGEKESGSIDL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68497.16480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A812XWB5_9DINO1.130e-7687.95HelA protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A3D4UIM1_9BACT1.280e-7074.85Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A2E2N5L6_9BACT3.650e-4856.50Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7Z9PTJ5_9BACT5.670e-3563.54Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X0H4E0_9BACT2.260e-2941.67Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A518CVU9_9BACT7.770e-2952.43Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E2N5U2_9BACT1.430e-1939.33Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A7Z9IHK4_9BACT5.240e-1539.36Uncharacterized protein n=3 Tax=Phycisphaerales ba... [more]
A0A2E5UEP1_9BACT9.070e-1435.79Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68497contigM-pyrifera_M_contig68497:98..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size513
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.822939-UTR-M-pyrifera_M_contig68497:97..1061622816576.822939-UTR-M-pyrifera_M_contig68497:97..106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68497 98..106 +
1692278056.8053787-UTR-M-pyrifera_M_contig68497:97..1061692278056.8053787-UTR-M-pyrifera_M_contig68497:97..106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68497 98..106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.8366246-CDS-M-pyrifera_M_contig68497:106..6101622816576.8366246-CDS-M-pyrifera_M_contig68497:106..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68497 107..610 +
1692278056.8206768-CDS-M-pyrifera_M_contig68497:106..6101692278056.8206768-CDS-M-pyrifera_M_contig68497:106..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68497 107..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68497.16480.1prot_M-pyrifera_M_contig68497.16480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68497 107..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68497.16480.1

>prot_M-pyrifera_M_contig68497.16480.1 ID=prot_M-pyrifera_M_contig68497.16480.1|Name=mRNA_M-pyrifera_M_contig68497.16480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MNNLTKLLLVSTITGLLFLGGCGTESEAPDTDSHLDHDNHEGHNHGEDGH
EDHNHADDEPDAHGSEGELGSVTIAGTTLSVNMGGDLKPGAVMHLDIKAT
DGPEPVAIRVWIGDKAATGALKGKATGSGGDYHAEAEAPAELMPDAAVWI
EIETAIGSRETGSISID*
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mRNA from alignment at M-pyrifera_M_contig68497:98..610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68497.16480.1 ID=mRNA_M-pyrifera_M_contig68497.16480.1|Name=mRNA_M-pyrifera_M_contig68497.16480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig68497:98..610+ (Macrocystis pyrifera P11B4 male)
AAAACTGACATGAACAATCTCACTAAACTGCTCCTCGTTTCCACAATCAC CGGCCTGCTCTTTCTCGGCGGGTGTGGCACCGAATCGGAAGCACCTGACA CAGATTCCCACTTGGATCACGACAACCACGAGGGTCACAACCATGGCGAA GACGGACACGAAGACCACAACCACGCTGATGATGAGCCGGATGCTCACGG TTCCGAAGGCGAACTCGGCTCCGTGACGATCGCCGGCACCACACTCAGCG TCAATATGGGTGGTGACCTCAAGCCAGGGGCAGTCATGCATCTCGATATC AAAGCCACCGATGGCCCAGAGCCGGTTGCTATCCGAGTTTGGATCGGCGA TAAAGCCGCGACAGGCGCACTCAAGGGAAAGGCGACCGGCAGCGGAGGTG ACTACCACGCTGAAGCCGAGGCGCCCGCAGAACTGATGCCCGATGCCGCA GTTTGGATCGAGATCGAAACTGCCATTGGTAGCCGTGAAACCGGTTCGAT CAGCATCGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68497:98..610+

>mRNA_M-pyrifera_M_contig68497.16480.1 ID=mRNA_M-pyrifera_M_contig68497.16480.1|Name=mRNA_M-pyrifera_M_contig68497.16480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig68497:98..610+ (Macrocystis pyrifera P11B4 male)
ATGAACAATCTCACTAAACTGCTCCTCGTTTCCACAATCACCGGCCTGCT
CTTTCTCGGCGGGTGTGGCACCGAATCGGAAGCACCTGACACAGATTCCC
ACTTGGATCACGACAACCACGAGGGTCACAACCATGGCGAAGACGGACAC
GAAGACCACAACCACGCTGATGATGAGCCGGATGCTCACGGTTCCGAAGG
CGAACTCGGCTCCGTGACGATCGCCGGCACCACACTCAGCGTCAATATGG
GTGGTGACCTCAAGCCAGGGGCAGTCATGCATCTCGATATCAAAGCCACC
GATGGCCCAGAGCCGGTTGCTATCCGAGTTTGGATCGGCGATAAAGCCGC
GACAGGCGCACTCAAGGGAAAGGCGACCGGCAGCGGAGGTGACTACCACG
CTGAAGCCGAGGCGCCCGCAGAACTGATGCCCGATGCCGCAGTTTGGATC
GAGATCGAAACTGCCATTGGTAGCCGTGAAACCGGTTCGATCAGCATCGA
TTAGATGAACAATCTCACTAAACTGCTCCTCGTTTCCACAATCACCGGCC
TGCTCTTTCTCGGCGGGTGTGGCACCGAATCGGAAGCACCTGACACAGAT
TCCCACTTGGATCACGACAACCACGAGGGTCACAACCATGGCGAAGACGG
ACACGAAGACCACAACCACGCTGATGATGAGCCGGATGCTCACGGTTCCG
AAGGCGAACTCGGCTCCGTGACGATCGCCGGCACCACACTCAGCGTCAAT
ATGGGTGGTGACCTCAAGCCAGGGGCAGTCATGCATCTCGATATCAAAGC
CACCGATGGCCCAGAGCCGGTTGCTATCCGAGTTTGGATCGGCGATAAAG
CCGCGACAGGCGCACTCAAGGGAAAGGCGACCGGCAGCGGAGGTGACTAC
CACGCTGAAGCCGAGGCGCCCGCAGAACTGATGCCCGATGCCGCAGTTTG
GATCGAGATCGAAACTGCCATTGGTAGCCGTGAAACCGGTTCGATCAGCA
TCGATTAG
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