mRNA_M-pyrifera_M_contig67800.16361.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67800.16361.1
Unique NamemRNA_M-pyrifera_M_contig67800.16361.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: D8LEI3_ECTSI (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.010e-25
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 VEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG 159
            V++ VKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPP+NSG
Sbjct:   24 VDITVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPSNSG 75
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.910e-25
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG 159
            +V+V VKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPP+NSG
Sbjct:  185 KVDVTVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPSNSG 237
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A7S2XZP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZP9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.930e-21
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANS 156
            +VE+ V+INHDGEVNRARYMPQN FVIATKSPS+DV VFD++KHPSVPP N+
Sbjct:  124 KVEIQVRINHDGEVNRARYMPQNPFVIATKSPSSDVFVFDVTKHPSVPPPNT 175
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A835ZEH9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.800e-19
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANS 156
            ++E+ VK+NH+GEVNRARYMPQN FVIATK P ADVCVFD+S+HPSVP  N+
Sbjct:  126 KIEISVKLNHEGEVNRARYMPQNPFVIATKGPHADVCVFDVSRHPSVPANNT 177
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A7S4E6Q4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6Q4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.650e-17
Identity = 35/48 (72.92%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVP 144
            ++E+ +KINH+GE+NRARYMPQN F++ATKSPS+DV VFDISKHPS+P
Sbjct:  100 KMEINIKINHEGEINRARYMPQNPFILATKSPSSDVFVFDISKHPSLP 147
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: F0YI25_AURAN (Uncharacterized protein MUT11 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI25_AURAN)

HSP 1 Score: 82.8 bits (203), Expect = 2.760e-17
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG 159
            ++E+ +KI H GEVNRARYMPQN F++ATKSP ADV VFD+SKHPSVP A  G
Sbjct:  106 KIEIKIKILHQGEVNRARYMPQNPFIVATKSPCADVFVFDMSKHPSVPSAGKG 158
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: C1EE39_MICCC (NURF complex component n=3 Tax=Micromonas TaxID=38832 RepID=C1EE39_MICCC)

HSP 1 Score: 82.4 bits (202), Expect = 4.110e-17
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG 159
            +V+V+  INHDGEVNRARY PQNEFVIATK+ SADV VFD SKHPS PPA+ G
Sbjct:  114 KVQVVQLINHDGEVNRARYCPQNEFVIATKTISADVYVFDYSKHPSKPPADGG 166
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: K8Z9S4_NANGC (Retinoblastoma binding protein 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z9S4_NANGC)

HSP 1 Score: 82.0 bits (201), Expect = 5.530e-17
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPAN 153
            +VEV VKI H+GEVNRARYMPQN FV+ATK PSADV VFDI+KHPS P  N
Sbjct:  119 KVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPN 169
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A7M5V8C8_9CNID (CAF1C_H4-bd domain-containing protein n=3 Tax=Hydroidolina TaxID=37516 RepID=A0A7M5V8C8_9CNID)

HSP 1 Score: 82.0 bits (201), Expect = 5.670e-17
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG 159
            ++E+ +KINH+GEVNRARYMPQN +VIATK+P++DV +FD +KHPS P  NSG
Sbjct:  115 KIEIDIKINHEGEVNRARYMPQNPYVIATKTPTSDVLIFDYTKHPSKPDPNSG 167
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BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Match: A0A4D9CXY4_9STRA (CAF1C_H4-bd domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXY4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.840e-17
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 QVEVMVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPAN 153
            +VEV VKI H+GEVNRARYMPQN FV+ATK PSADV VFDI+KHPS P  N
Sbjct:  119 KVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVYVFDITKHPSAPGPN 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67800.16361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEI3_ECTSI1.010e-2592.31CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JAT4_9PHAE4.910e-2592.45CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2XZP9_9STRA8.930e-2178.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZEH9_9STRA4.800e-1973.08WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S4E6Q4_9STRA2.650e-1772.92Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YI25_AURAN2.760e-1769.81Uncharacterized protein MUT11 n=1 Tax=Aureococcus ... [more]
C1EE39_MICCC4.110e-1775.47NURF complex component n=3 Tax=Micromonas TaxID=38... [more]
K8Z9S4_NANGC5.530e-1776.47Retinoblastoma binding protein 4 (Fragment) n=1 Ta... [more]
A0A7M5V8C8_9CNID5.670e-1766.04CAF1C_H4-bd domain-containing protein n=3 Tax=Hydr... [more]
A0A4D9CXY4_9STRA5.840e-1776.47CAF1C_H4-bd domain-containing protein n=2 Tax=Mono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67800contigM-pyrifera_M_contig67800:699..860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D8LEI3
Preferred nameRBBP4
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046689,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin organization
EggNOG OGsKOG0264@1,KOG0264@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size162
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.872501-UTR-M-pyrifera_M_contig67800:698..7101622816568.872501-UTR-M-pyrifera_M_contig67800:698..710Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67800 699..710 +
1692278051.9825366-UTR-M-pyrifera_M_contig67800:698..7101692278051.9825366-UTR-M-pyrifera_M_contig67800:698..710Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67800 699..710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.8851085-CDS-M-pyrifera_M_contig67800:710..8601622816568.8851085-CDS-M-pyrifera_M_contig67800:710..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67800 711..860 +
1692278051.995141-CDS-M-pyrifera_M_contig67800:710..8601692278051.995141-CDS-M-pyrifera_M_contig67800:710..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67800 711..860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67800.16361.1prot_M-pyrifera_M_contig67800.16361.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67800 711..860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67800.16361.1

>prot_M-pyrifera_M_contig67800.16361.1 ID=prot_M-pyrifera_M_contig67800.16361.1|Name=mRNA_M-pyrifera_M_contig67800.16361.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MVKINHDGEVNRARYMPQNEFVIATKSPSADVCVFDISKHPSVPPANSG*
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mRNA from alignment at M-pyrifera_M_contig67800:699..860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67800.16361.1 ID=mRNA_M-pyrifera_M_contig67800.16361.1|Name=mRNA_M-pyrifera_M_contig67800.16361.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig67800:699..860+ (Macrocystis pyrifera P11B4 male)
CAGGTAGAAGTGATGGTGAAGATCAACCACGACGGAGAGGTGAACCGCGC
GCGCTACATGCCGCAAAACGAGTTCGTCATCGCCACCAAGTCTCCCTCAG
CAGACGTGTGCGTGTTCGACATCTCCAAGCATCCCAGCGTACCTCCGGCG
AACAGCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67800:699..860+

>mRNA_M-pyrifera_M_contig67800.16361.1 ID=mRNA_M-pyrifera_M_contig67800.16361.1|Name=mRNA_M-pyrifera_M_contig67800.16361.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig67800:699..860+ (Macrocystis pyrifera P11B4 male)
ATGGTGAAGATCAACCACGACGGAGAGGTGAACCGCGCGCGCTACATGCC
GCAAAACGAGTTCGTCATCGCCACCAAGTCTCCCTCAGCAGACGTGTGCG
TGTTCGACATCTCCAAGCATCCCAGCGTACCTCCGGCGAACAGCGGGTGA
ATGGTGAAGATCAACCACGACGGAGAGGTGAACCGCGCGCGCTACATGCC
GCAAAACGAGTTCGTCATCGCCACCAAGTCTCCCTCAGCAGACGTGTGCG
TGTTCGACATCTCCAAGCATCCCAGCGTACCTCCGGCGAACAGCGGGTGA
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