mRNA_M-pyrifera_M_contig66553.16137.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66553.16137.1
Unique NamemRNA_M-pyrifera_M_contig66553.16137.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A517PT31_9PLAN (Calx-beta domain protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PT31_9PLAN)

HSP 1 Score: 463 bits (1192), Expect = 4.930e-147
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
Query:    1 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK 711
            LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK
Sbjct:  221 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK 457          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A518FVZ5_9PLAN (Calx-beta domain protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FVZ5_9PLAN)

HSP 1 Score: 333 bits (855), Expect = 9.750e-102
Identity = 177/240 (73.75%), Postives = 197/240 (82.08%), Query Frame = 1
Query:    1 LYGLAAAADLEKQ----NVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDIL 708
            L G AA  DL K     N E EYQQGN +DE+ +VFADTI   TSGT GTDEFNQNLVN+LAFTATHEAFHTFSI+HTTSPLSYGGVITQY  Y+EDPY+VIRYDLTQRQD  KVTEPNNYLQIANDPEIGL++     D +G P LAYVTGTG +DRITLTQID DTVSV V PYS+ A+T+Q T T EPL E YTIDLNLDT GEILIDAGLGDDEII+DSS++A IR+RGGSG+D +
Sbjct:  215 LLGRAAPDDLNKTIVNANNEIEYQQGNHEDESVIVFADTILGATSGTYGTDEFNQNLVNKLAFTATHEAFHTFSIYHTTSPLSYGGVITQYGNYNEDPYQVIRYDLTQRQDSAKVTEPNNYLQIANDPEIGLRE-----DSNGTPLLAYVTGTGANDRITLTQIDPDTVSVTVTPYSNHARTKQDTQTGEPLSETYTIDLNLDTTGEILIDAGLGDDEIIIDSSINASIRVRGGSGDDTI 449          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A2E7KAE1_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KAE1_9PLAN)

HSP 1 Score: 239 bits (609), Expect = 1.070e-68
Identity = 139/246 (56.50%), Postives = 170/246 (69.11%), Query Frame = 1
Query:    4 YGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAK--YSEDPYEVIRYDLTQRQDGEKVTEPN-------NYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSA-QIRLRGGSGNDILK 711
            YG+AAAADL   + + EY  GN  DE+  VFAD +F   +G  GT EFN++LV RLA+T+THEAFHTFS+ H+   LS G VI +  +  Y E PY V R+DL +    E++ +PN       NY  IANDP+IGL+D+N       IPDLAYVTGTG HDRITLTQIDADTVSV V PY DS KTQQY D+ + + E YTIDLNL TEG+ILIDAG+GDDE ++D +  A  I LRGG G D+LK
Sbjct:  214 YGIAAAADLIDDSQDEEYH-GNRYDESVQVFADVVFKSIAGVEGTAEFNESLVQRLAYTSTHEAFHTFSLHHSAEQLSAGDVILEGVENTYREFPYMVTRFDLPR---SEEILDPNISFYSIDNYEIIANDPDIGLRDDNRNL----IPDLAYVTGTGAHDRITLTQIDADTVSVTVTPYHDSLKTQQYDDSGQLVSETYTIDLNLHTEGKILIDAGMGDDEFVIDFNTDAFSIELRGGGGTDVLK 451          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: UPI00118C4F13 (cadherin-like domain-containing protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118C4F13)

HSP 1 Score: 232 bits (592), Expect = 2.090e-66
Identity = 137/246 (55.69%), Postives = 166/246 (67.48%), Query Frame = 1
Query:    4 YGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAK--YSEDPYEVIRYDLTQRQDGEKVTEPN-------NYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSA-QIRLRGGSGNDILK 711
            YG+AAAADL   + + EY  GN  DE+  VFAD +F   +G  GT EFN++LV RLA+T+THEAFHTFS+ H+   LS G VI +  +  Y E PY V R+DL +    E++ +PN       NY  IAND +IGL+D N       IPDLAYVTGTG HDRITLTQIDADTVSV V PY DS KTQ Y D  + + E YTIDLNL TEG+ILIDAG+GDDE ++D +  A  I LRGG G D+LK
Sbjct:  214 YGIAAAADLIDDSQDEEYH-GNRYDESVQVFADVVFKSIAGVEGTAEFNESLVQRLAYTSTHEAFHTFSLHHSAEQLSAGDVILEGVENNYREFPYMVTRFDLPR---SEEILDPNISFYSIDNYEIIANDHDIGLRDENRNL----IPDLAYVTGTGAHDRITLTQIDADTVSVTVTPYHDSLKTQPYDDAGQLVSETYTIDLNLHTEGKILIDAGMGDDEFVIDFNTDAFSIELRGGGGTDVLK 451          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A517WYN5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WYN5_9PLAN)

HSP 1 Score: 224 bits (570), Expect = 1.600e-63
Identity = 132/229 (57.64%), Postives = 155/229 (67.69%), Query Frame = 1
Query:    1 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRG 687
            LYG+AAA+DL   N  G Y QGN  DEAA  F DTIFD T+GT GT  FN NL  R+A+TATHEAFHTFS  HTT  L  G VI   +   EDP+ V R+DL  RQ G  VT  NNY  IA+D +IGL+D     D DG PDLAYVTGTGGHD+ITLT   +  VSV V  YSD+A+T           ++YTIDL+ DTEGEILIDAG+GDDEII+D+S+ A  R+RG
Sbjct:  208 LYGIAAASDL-FTNTLGVYSQGNQYDEAAHTFIDTIFDDTTGTSGTAAFNANLSQRIAYTATHEAFHTFSAIHTTDSLDAGDVIELGSATREDPFMVTRFDLN-RQGGTSVTTKNNYELIASDSDIGLRDT----DSDGTPDLAYVTGTGGHDQITLTDAGSGIVSVTVNAYSDAARTMLVGT------DSYTIDLSSDTEGEILIDAGIGDDEIIIDASIEASFRVRG 424          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: UPI0018D7116A (Ig-like domain-containing protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=UPI0018D7116A)

HSP 1 Score: 202 bits (514), Expect = 6.080e-56
Identity = 119/232 (51.29%), Postives = 160/232 (68.97%), Query Frame = 1
Query:    7 GLAAAADL-EKQNVEGE--YQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYS--EDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRG 687
            G AAA+DL E   V+G   Y QGN +DEA +VFADTIF  T+GT GT EF +NL  RLA+TATHEAFHTFS++HTT  L++G VI    + +  EDP+ V R+DL +  D  KVT  NNY  IA+D +IGL+D+N      GIPD+AYVTGTG HDRIT+T+     + V++  YSD+A T         + E Y+I+L+ +++G +LID G+GDDEI++DS++ A IR+RG
Sbjct:  216 GAAAASDLYESVLVDGVTVYGQGNRRDEAVLVFADTIFSSTNGTQGTTEFGENLAQRLAYTATHEAFHTFSLWHTTGQLAHGDVILTGVENNDREDPFMVTRFDLDRVNDV-KVTNYNNYGLIASDTDIGLRDSNNN----GIPDIAYVTGTGAHDRITITKGTGSNIDVLIEAYSDTAMTSSLA-----MPETYSINLDTESDGTLLIDLGIGDDEIVIDSTIDALIRVRG 437          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A2D6HJ56_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HJ56_9BACT)

HSP 1 Score: 199 bits (505), Expect = 9.640e-55
Identity = 119/243 (48.97%), Postives = 153/243 (62.96%), Query Frame = 1
Query:    1 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSP---------LSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGND 702
            L+G+AAA DL  Q        GN QDEA + F+DT+F+  SG  GT  FNQNL +RLA+TATHEAFHTF+  HTT           ++ G VI   +   EDP+ V R+DL +RQDG  V EPNNYLQ A D +IGL+D N      G PD A+V+GTG HD ITLT  D +TV+V V  YS+ A+T           E+YTI+L  DT+GEILID G+ +D I +D+++ A  R+RGG+G D
Sbjct:  210 LFGIAAADDLFAQ-------AGNDQDEATLTFSDTVFNSVSGVPGTPAFNQNLAHRLAYTATHEAFHTFTYVHTTDAGGANNGDRLMTSGDVIRLGSVTREDPFFVTRFDL-ERQDGFGVAEPNNYLQAAGDADIGLRDGNAN----GTPDFAFVSGTGAHDNITLTSGDPNTVNVQVNAYSNPARTVLIDS------ESYTINLTTDTDGEILIDGGINNDNISIDAAIDATYRIRGGTGTD 434          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A517RIR5_9PLAN (Calx-beta domain protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RIR5_9PLAN)

HSP 1 Score: 179 bits (454), Expect = 5.810e-48
Identity = 102/199 (51.26%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  121 SGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYS--EDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK 711
            SGT GT  FN  L  RLA+TATHEAFHT+S+ HTT  L+YG VI +  + S  ++P+ V R+DL  R     V+E NNY  +AND ++GL+D++      GIPDLAYVTGTG HD+I LT    DTV+V +  YSD A+T Q   T      +YTIDL  DT+GEILIDAG+G DEI++D+++ A  R+RGG G D  +
Sbjct:    9 SGTPGTSSFNTYLAQRLAYTATHEAFHTYSLRHTTGQLAYGDVILRGPENSVRDEPFMVTRFDLD-RYGNPSVSEYNNYELLANDSDLGLRDDSNN----GIPDLAYVTGTGAHDQIALTNTGTDTVTVTIKAYSDEARTTQIGSTF-----SYTIDLTSDTDGEILIDAGIGVDEIVIDATIDASFRIRGGGGADTFR 197          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A2E8FFN0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FFN0_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 1.760e-42
Identity = 103/243 (42.39%), Postives = 134/243 (55.14%), Query Frame = 1
Query:    1 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTTSP------LSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK 711
            LYGLAA  DL           GN  DEA + F DTI   TSG  GTDEFN+NL +R+A+T  HEA HTF ++HT         LS G  I   +   E    V R+DL     G  V   NNY  +A+DP+IGL+D+    D DG+PD AYVTGTG HD I LT +      V +  Y DSA T           ++YTI   +DTEG ILID+ +GDD + +  S+   + +RGG G+D+++
Sbjct:  193 LYGLAAGEDLFSGT-------GNNHDEATLTFTDTIVGATSGVAGTDEFNENLAHRVAYTMVHEAMHTFGLYHTKGLTAQEQLLSSGDTIRHGSITRETNNIVTRFDLQLNGSGTLV---NNYETLASDPDIGLRDS----DHDGVPDFAYVTGTGAHDIIQLTDLGGGVTQVQIDAYFDSALTTLIRS------DSYTITQGVDTEGLILIDSSVGDDLVEISGSVMTSVMVRGGEGDDVIE 415          
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Match: A0A2E7NVX5_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NVX5_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 1.180e-41
Identity = 99/243 (40.74%), Postives = 139/243 (57.20%), Query Frame = 1
Query:    1 LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFNQNLVNRLAFTATHEAFHTFSIFHTT--SP----LSYGGVITQYAKYSEDPYEVIRYDLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTGGHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDTEGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK 711
            LYG+AA  DL           GN  DEA + F DTI   TSG  GT+EFN+NL +R+A+T  HEA HTF ++HT   +P    LS G  I   +   E    V R+DL     G  V   NNY  +A+DP+IGL+D     D DG+PD AY+TGTG HD ITLT +      V +  + DS  T           ++YTI   LDTEG I+ID+ +GDD +++D++++A + ++ G G+D+++
Sbjct:  193 LYGIAAGEDLFSAT-------GNNHDEATLTFTDTIVAATSGISGTEEFNENLAHRVAYTVVHEAMHTFGLYHTKGLTPQERLLSSGDTIRHGSITRETNNIVTRFDLQLFGSGTLV---NNYEILASDPDIGLRDT----DRDGVPDFAYITGTGAHDLITLTDLGGGVTQVQIDAFYDSGMTDLIRS------DSYTITQGLDTEGRIVIDSSVGDDTVLIDAAVTASVMVQAGQGDDVVE 415          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66553.16137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A517PT31_9PLAN4.930e-147100.00Calx-beta domain protein n=1 Tax=Gimesia chilikens... [more]
A0A518FVZ5_9PLAN9.750e-10273.75Calx-beta domain protein n=1 Tax=Gimesia panareens... [more]
A0A2E7KAE1_9PLAN1.070e-6856.50Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
UPI00118C4F132.090e-6655.69cadherin-like domain-containing protein n=1 Tax=Gi... [more]
A0A517WYN5_9PLAN1.600e-6357.64Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
UPI0018D7116A6.080e-5651.29Ig-like domain-containing protein n=1 Tax=Gimesia ... [more]
A0A2D6HJ56_9BACT9.640e-5548.97Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517RIR5_9PLAN5.810e-4851.26Calx-beta domain protein n=2 Tax=Gimesia alba TaxI... [more]
A0A2E8FFN0_9PLAN1.760e-4242.39Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E7NVX5_9PLAN1.180e-4140.74Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66553contigM-pyrifera_M_contig66553:576..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size711
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.11408-CDS-M-pyrifera_M_contig66553:575..12861622816556.11408-CDS-M-pyrifera_M_contig66553:575..1286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66553 576..1286 -
1692278044.679871-CDS-M-pyrifera_M_contig66553:575..12861692278044.679871-CDS-M-pyrifera_M_contig66553:575..1286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66553 576..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66553.16137.1prot_M-pyrifera_M_contig66553.16137.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66553 576..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66553.16137.1

>prot_M-pyrifera_M_contig66553.16137.1 ID=prot_M-pyrifera_M_contig66553.16137.1|Name=mRNA_M-pyrifera_M_contig66553.16137.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=237bp
LYGLAAAADLEKQNVEGEYQQGNFQDEAAVVFADTIFDFTSGTVGTDEFN
QNLVNRLAFTATHEAFHTFSIFHTTSPLSYGGVITQYAKYSEDPYEVIRY
DLTQRQDGEKVTEPNNYLQIANDPEIGLKDNNGQNDGDGIPDLAYVTGTG
GHDRITLTQIDADTVSVMVIPYSDSAKTQQYTDTNEPLFEAYTIDLNLDT
EGEILIDAGLGDDEIILDSSLSAQIRLRGGSGNDILK
back to top

mRNA from alignment at M-pyrifera_M_contig66553:576..1286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66553.16137.1 ID=mRNA_M-pyrifera_M_contig66553.16137.1|Name=mRNA_M-pyrifera_M_contig66553.16137.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=711bp|location=Sequence derived from alignment at M-pyrifera_M_contig66553:576..1286- (Macrocystis pyrifera P11B4 male)
CTGTACGGGCTCGCTGCTGCTGCTGATTTAGAGAAGCAAAATGTCGAGGG TGAATACCAGCAGGGGAATTTTCAAGATGAAGCAGCAGTCGTATTCGCAG ATACAATTTTTGACTTTACCAGTGGAACTGTGGGTACCGATGAATTCAAT CAAAATCTGGTAAATCGCCTGGCCTTCACAGCGACACATGAAGCGTTTCA CACATTCAGCATCTTTCATACGACGAGTCCCCTGTCATATGGTGGTGTGA TCACTCAGTATGCCAAATATAGCGAAGATCCCTACGAGGTGATTCGATAC GATCTCACACAACGACAGGATGGAGAAAAGGTCACAGAACCGAATAATTA TTTACAGATCGCGAACGATCCTGAGATTGGTTTGAAAGATAATAATGGGC AGAATGACGGAGATGGTATCCCGGATCTCGCATATGTGACCGGAACGGGA GGGCATGATCGGATTACTCTCACCCAGATTGACGCGGATACCGTCAGTGT GATGGTTATTCCTTATTCTGATTCCGCCAAAACCCAACAATATACAGATA CCAATGAGCCTTTATTTGAGGCATATACGATCGATCTGAATCTGGATACA GAAGGCGAAATCTTAATTGACGCCGGACTCGGCGATGATGAGATTATTCT CGACTCAAGTCTCTCCGCACAGATTCGTCTGCGTGGTGGAAGTGGAAATG ATATTCTGAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66553:576..1286-

>mRNA_M-pyrifera_M_contig66553.16137.1 ID=mRNA_M-pyrifera_M_contig66553.16137.1|Name=mRNA_M-pyrifera_M_contig66553.16137.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig66553:576..1286- (Macrocystis pyrifera P11B4 male)
CTGTACGGGCTCGCTGCTGCTGCTGATTTAGAGAAGCAAAATGTCGAGGG
TGAATACCAGCAGGGGAATTTTCAAGATGAAGCAGCAGTCGTATTCGCAG
ATACAATTTTTGACTTTACCAGTGGAACTGTGGGTACCGATGAATTCAAT
CAAAATCTGGTAAATCGCCTGGCCTTCACAGCGACACATGAAGCGTTTCA
CACATTCAGCATCTTTCATACGACGAGTCCCCTGTCATATGGTGGTGTGA
TCACTCAGTATGCCAAATATAGCGAAGATCCCTACGAGGTGATTCGATAC
GATCTCACACAACGACAGGATGGAGAAAAGGTCACAGAACCGAATAATTA
TTTACAGATCGCGAACGATCCTGAGATTGGTTTGAAAGATAATAATGGGC
AGAATGACGGAGATGGTATCCCGGATCTCGCATATGTGACCGGAACGGGA
GGGCATGATCGGATTACTCTCACCCAGATTGACGCGGATACCGTCAGTGT
GATGGTTATTCCTTATTCTGATTCCGCCAAAACCCAACAATATACAGATA
CCAATGAGCCTTTATTTGAGGCATATACGATCGATCTGAATCTGGATACA
GAAGGCGAAATCTTAATTGACGCCGGACTCGGCGATGATGAGATTATTCT
CGACTCAAGTCTCTCCGCACAGATTCGTCTGCGTGGTGGAAGTGGAAATG
ATATTCTGAAACTGTACGGGCTCGCTGCTGCTGCTGATTTAGAGAAGCAA
AATGTCGAGGGTGAATACCAGCAGGGGAATTTTCAAGATGAAGCAGCAGT
CGTATTCGCAGATACAATTTTTGACTTTACCAGTGGAACTGTGGGTACCG
ATGAATTCAATCAAAATCTGGTAAATCGCCTGGCCTTCACAGCGACACAT
GAAGCGTTTCACACATTCAGCATCTTTCATACGACGAGTCCCCTGTCATA
TGGTGGTGTGATCACTCAGTATGCCAAATATAGCGAAGATCCCTACGAGG
TGATTCGATACGATCTCACACAACGACAGGATGGAGAAAAGGTCACAGAA
CCGAATAATTATTTACAGATCGCGAACGATCCTGAGATTGGTTTGAAAGA
TAATAATGGGCAGAATGACGGAGATGGTATCCCGGATCTCGCATATGTGA
CCGGAACGGGAGGGCATGATCGGATTACTCTCACCCAGATTGACGCGGAT
ACCGTCAGTGTGATGGTTATTCCTTATTCTGATTCCGCCAAAACCCAACA
ATATACAGATACCAATGAGCCTTTATTTGAGGCATATACGATCGATCTGA
ATCTGGATACAGAAGGCGAAATCTTAATTGACGCCGGACTCGGCGATGAT
GAGATTATTCTCGACTCAAGTCTCTCCGCACAGATTCGTCTGCGTGGTGG
AAGTGGAAATGATATTCTGAAA
back to top