mRNA_M-pyrifera_M_contig6636.16101.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6636.16101.1
Unique NamemRNA_M-pyrifera_M_contig6636.16101.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: D8LJS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 6.160e-56
Identity = 85/112 (75.89%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQA-GTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            KPYEYV VDSP LA+V+ DGR FAEH+AS++GTN+VV+FRN+R+DARLVVPCRGGQ  G NYAHLA F+R+APR+QVV+FFGAVG GLE+E+ SR DE+PVWLSTSGLGVYW
Sbjct:  153 KPYEYVLVDSPRLAAVTADGRPFAEHIASRKGTNDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFLRTAPRDQVVQFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 264          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A6H5L146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.240e-55
Identity = 85/112 (75.89%), Postives = 100/112 (89.29%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQA-GTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            KPYEYV VDSP LA+V+ DG  FAEH+AS++GT++VV+FRN+R+DARLVVPCRGGQ  G NYAHLA FVR+APR+QVVKFFGAVG GLE+E+ SR DE+PVWLSTSGLGVYW
Sbjct:  150 KPYEYVLVDSPRLAAVTADGSPFAEHIASKQGTDDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFVRTAPRDQVVKFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 261          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: UPI001880BA32 (hypothetical protein n=1 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001880BA32)

HSP 1 Score: 102 bits (253), Expect = 7.760e-25
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 YEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +E+V VDSP+LA V  +   FA H A+     +++TF N+ KDA LVVPC      T Y H+A F+R AP +Q    + +VG  LE+    ++DE P+WLSTSGLGVYW
Sbjct:   73 FEFVLVDSPNLAGVQANPSDFASHFAAAGEKESIITFPNLGKDALLVVPCPKASTST-YRHIAAFMREAPTQQKHALWQSVGLALEQ----KLDEHPIWLSTSGLGVYW 176          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A352AGC7_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AGC7_9CYAN)

HSP 1 Score: 98.6 bits (244), Expect = 1.660e-23
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   10 YEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +E+V +DSP L  V  D   FA H A+      +VTF N+ KDA LVVPC    A T Y H+A F+R AP  Q    + +VG+ +E+    R++E P+WLSTSGLGV W
Sbjct:   73 FEFVLIDSPQLVDVQADSSDFAHHFAAAGENELIVTFPNLGKDALLVVPCPQASAST-YGHIAAFIREAPEHQKHALWQSVGSAVEQ----RLNEHPLWLSTSGLGVSW 176          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A6B3M9Q3_9CYAN (Uncharacterized protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3M9Q3_9CYAN)

HSP 1 Score: 98.6 bits (244), Expect = 2.690e-23
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   10 YEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +E+VT++SP LA+V  +  AFA+H+      + V  F N+  DA L+ PC+ G    +Y HLA FVR AP++Q+ KF+  +G  LE+ + +R +  P+W+STSGLGVYW
Sbjct:   92 FEFVTLNSPQLANVLPEPDAFAQHIGDSMNRDLVKVFPNLGGDALLIAPCQNGPQ-QHYTHLAKFVRCAPKKQIDKFWRTIGYTLEQTLQAR-EPHPLWVSTSGLGVYW 198          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A846AAJ9_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AAJ9_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.310e-22
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +P+E   +DSP LA V+ D +AFA++L + E  + V  F N++ D  LVVPCRG Q    YAHLA FVRSAP  Q    +  VG  +   +++   + P+W+STSGLGVYW
Sbjct:   82 QPFECCLIDSPQLAKVTADPQAFADYLHA-ERCDEVQAFPNLKGDTLLVVPCRGSQQ-QQYAHLAAFVRSAPTPQTHALWQVVGRSVAR-LLNEYGQQPLWVSTSGLGVYW 189          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A1Z4VMG1_9GAMM (Uncharacterized protein n=4 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VMG1_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-21
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTN-YAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +PYE V VD+P LA +  D  +FA+      G   +  F N   DARL+ PC   QA T+ YAHL TFVR+AP  Q   F+  VGA L   + S    +P+WLSTSGLGVYW
Sbjct:   80 RPYEQVCVDAPSLAGIRPDPHSFADQFDRHCGGGGIAEFANPGGDARLIAPCP--QASTDCYAHLLTFVRTAPAAQCDAFWRRVGAALGRALSS----TPLWLSTSGLGVYW 185          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A661FR64_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661FR64_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 1.190e-21
Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            + +E+V V+SP LA +  + RAFA   A+     +V+ F N+  DA LVVPC  G     Y+ ++TF R AP +Q  + +  VGA LE+++  R    PVWLSTSGLGVYW
Sbjct:   74 REFEFVLVESPQLAGIRTNERAFANQFAAARPEASVIEFSNLGGDATLVVPCLQGPISA-YSQISTFARLAPADQQHQLWALVGATLEQQLSER----PVWLSTSGLGVYW 179          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A3B0VAL2_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VAL2_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 2.790e-21
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    4 KPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            +P+E+V VD+P LA V  + RAFA + ++      VV F N+  DA LVVPC    A T Y HLATF R AP EQ   F+  VG      V + V E P+W+STSGLGVYW
Sbjct:   71 RPFEFVLVDAPQLAQVQAEPRAFASYFSADP----VVDFGNLGGDAHLVVPCPQ-TAVTAYPHLATFSRLAPIEQQHHFWQRVGTA----VSNHVGERPLWVSTSGLGVYW 172          
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Match: A0A2E9JVB4_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9JVB4_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 5.280e-21
Identity = 50/110 (45.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    7 PYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLVVPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESPVWLSTSGLGVYW 336
            P+E V V+SP L+ V+ D   F   L      + + TF N+  DA L+ PC G  AG  YAHLA FVR AP +    F+  VGA L   +       PVWLSTSGLGVYW
Sbjct:   77 PFECVVVNSPALSGVAADSGPFGSQLDRLHSPDGIATFENLGGDALLIAPCTGQGAGA-YAHLAIFVRHAPLQLQRTFWARVGAALAASLAGN----PVWLSTSGLGVYW 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6636.16101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJS5_ECTSI6.160e-5675.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L146_9PHAE1.240e-5575.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001880BA327.760e-2546.79hypothetical protein n=1 Tax=unclassified Coleofas... [more]
A0A352AGC7_9CYAN1.660e-2345.87Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A6B3M9Q3_9CYAN2.690e-2344.04Uncharacterized protein n=1 Tax=Symploca sp. SIO2E... [more]
A0A846AAJ9_9CYAN1.310e-2245.95Uncharacterized protein n=1 Tax=Leptolyngbya sp. S... [more]
A0A1Z4VMG1_9GAMM1.060e-2147.32Uncharacterized protein n=4 Tax=Thiohalobacter Tax... [more]
A0A661FR64_9GAMM1.190e-2144.14Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A3B0VAL2_9ZZZZ2.790e-2148.65Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A2E9JVB4_9GAMM5.280e-2145.45Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6636contigM-pyrifera_M_contig6636:5020..6271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog2880.D8LJS5
Hectar predicted targeting categoryother localisation
EggNOG OGs2B3PJ@1,2S91Y@2759
Ec32 ortholog descriptionSecreted protein similar to EsV-1-207
Ec32 orthologEc-12_003090.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size339
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6636.16101.1prot_M-pyrifera_M_contig6636.16101.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6636 5020..6271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.7556722-CDS-M-pyrifera_M_contig6636:5019..51301622816553.7556722-CDS-M-pyrifera_M_contig6636:5019..5130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 5020..5130 -
1692278043.2827332-CDS-M-pyrifera_M_contig6636:5019..51301692278043.2827332-CDS-M-pyrifera_M_contig6636:5019..5130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 5020..5130 -
1622816553.7703784-CDS-M-pyrifera_M_contig6636:5633..57641622816553.7703784-CDS-M-pyrifera_M_contig6636:5633..5764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 5634..5764 -
1692278043.2934666-CDS-M-pyrifera_M_contig6636:5633..57641692278043.2934666-CDS-M-pyrifera_M_contig6636:5633..5764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 5634..5764 -
1622816553.7819047-CDS-M-pyrifera_M_contig6636:6174..62711622816553.7819047-CDS-M-pyrifera_M_contig6636:6174..6271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 6175..6271 -
1692278043.3030002-CDS-M-pyrifera_M_contig6636:6174..62711692278043.3030002-CDS-M-pyrifera_M_contig6636:6174..6271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6636 6175..6271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6636.16101.1

>prot_M-pyrifera_M_contig6636.16101.1 ID=prot_M-pyrifera_M_contig6636.16101.1|Name=mRNA_M-pyrifera_M_contig6636.16101.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
SKPYEYVTVDSPHLASVSEDGRAFAEHLASQEGTNNVVTFRNMRKDARLV
VPCRGGQAGTNYAHLATFVRSAPREQVVKFFGAVGAGLEEEVVSRVDESP
VWLSTSGLGVYW*
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mRNA from alignment at M-pyrifera_M_contig6636:5020..6271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6636.16101.1 ID=mRNA_M-pyrifera_M_contig6636.16101.1|Name=mRNA_M-pyrifera_M_contig6636.16101.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1252bp|location=Sequence derived from alignment at M-pyrifera_M_contig6636:5020..6271- (Macrocystis pyrifera P11B4 male)
AGCAAGCCGTATGAGTACGTCACGGTCGACTCTCCCCATCTGGCGTCAGT GTCGGAGGATGGACGTGCTTTCGCCGAGCACCTTGCGTCGCAAGAAGGTG AGGCATTGGCGTGTGCGATTGAGGAAGACTATCTCTATGCCTATTGCTCT TTCTCTAGCACCTTGCGCACATATAAGTTTGTCCTGGAAAAAAATATACA TATCCCGGATTTCTCTCGAGTTGGACAGGGGTTATCATAGATCGGGTTTG GGACACGCAGTCAACTGGCTGAGTACGAGGGTCGGTCCCTGCTAAGGGGT CATGGTTTCGGTTTCCTCCGCTGGGGGCTTTGGCGTGCCGCTGTTAGTTT ACGGTCTTTGCACCACAGTATTCAGCGTGCCTATTAAATAGTGCTGAGAA ACGTGCGCAGAGGATGGCGGTGGCCAGGATGTCAAGCAGATCTCCAGTCT TAACCAGTCGGCGCGCTTGATCCTGTGAAACAATGGGCTACTGCACGCTG TACTCAGGCACGAACAACGTGGTGACGTTCCGAAACATGCGAAAGGACGC CCGTCTCGTCGTTCCTTGCCGGGGAGGACAGGCAGGCACCAACTACGCGC ACCTGGCCACGTTCGTACGCAGCGCGCCTCGAGAACAGGTGAGATGGAAC CCACGGCTGTCGTAGCCGGACGGACACCCAAAGGCCTTGCTCGGAATAAC TACACAGAGCTCTCCTATTTTGATAAACCGTTCGACCGCGCAGCAGCTTT TATGTGGACGTTCCTTACGGGCACCTGCGATTGCTTTGACTCGAGGAACT TAGTGCGATATTCATTACCAGGTGAGGTGCAAGCTCGTTTTCGTGCCACA CGGCATACCTTCTCGAGAAGACGAGGCCGCAGCAACACCCGAGCGGTCGA CTTGTGGACTGTTGAGCGGTTGGCCTCCTCTGCAGAAGAGCTCTGTGACG CTGGCGTACGTGGAGCAGGCTACCGCGATCGCGGGGCAGACGCCCGACCC CGACAAGAAGAATACTCCAGGAAACCGCGAAGGCTACCCGTAGAAGTTGT GGCGCACAGCATTTCCTCGCAAGCAGTACCACCGCCATGCCGCCCCCTAC CTCACCGTGTCGTGCCTCTGTAATATTGGCCGTGGACGCAGGTGGTTAAG TTTTTCGGAGCTGTCGGCGCTGGCCTTGAAGAGGAGGTCGTTTCCAGGGT GGACGAAAGCCCTGTTTGGCTCAGCACGTCAGGACTAGGCGTCTACTGGT GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6636:5020..6271-

>mRNA_M-pyrifera_M_contig6636.16101.1 ID=mRNA_M-pyrifera_M_contig6636.16101.1|Name=mRNA_M-pyrifera_M_contig6636.16101.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig6636:5020..6271- (Macrocystis pyrifera P11B4 male)
AGCAAGCCGTATGAGTACGTCACGGTCGACTCTCCCCATCTGGCGTCAGT
GTCGGAGGATGGACGTGCTTTCGCCGAGCACCTTGCGTCGCAAGAAGAGC
AAGCCGTATGAGTACGTCACGGTCGACTCTCCCCATCTGGCGTCAGTGTC
GGAGGATGGACGTGCTTTCGCCGAGCACCTTGCGTCGCAAGAAGGCACGA
ACAACGTGGTGACGTTCCGAAACATGCGAAAGGACGCCCGTCTCGTCGTT
CCTTGCCGGGGAGGACAGGCAGGCACCAACTACGCGCACCTGGCCACGTT
CGTACGCAGCGCGCCTCGAGAACAGGCACGAACAACGTGGTGACGTTCCG
AAACATGCGAAAGGACGCCCGTCTCGTCGTTCCTTGCCGGGGAGGACAGG
CAGGCACCAACTACGCGCACCTGGCCACGTTCGTACGCAGCGCGCCTCGA
GAACAGGTGGTTAAGTTTTTCGGAGCTGTCGGCGCTGGCCTTGAAGAGGA
GGTCGTTTCCAGGGTGGACGAAAGCCCTGTTTGGCTCAGCACGTCAGGAC
TAGGCGTCTACTGGTGAGTGGTTAAGTTTTTCGGAGCTGTCGGCGCTGGC
CTTGAAGAGGAGGTCGTTTCCAGGGTGGACGAAAGCCCTGTTTGGCTCAG
CACGTCAGGACTAGGCGTCTACTGGTGA
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