mRNA_M-pyrifera_M_contig66168.16062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66168.16062.1
Unique NamemRNA_M-pyrifera_M_contig66168.16062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A397JX47_9GLOM (Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JX47_9GLOM)

HSP 1 Score: 65.5 bits (158), Expect = 2.450e-9
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  232 VLSDASRRFFFLRLPPVVVFHVQRFEAVGG---VRLMKRSDAVEFGETVELGKCV--ARKPGEP----------KARWLYALVAVVVHLGASLSSGHYIAYV 492
            VL DA++R+FF  LPPV+VFH++RF+ +G    V + K  D V+F E +++   V  + K G+             R  Y L  VVVH G SL +GHYIAYV
Sbjct: 1040 VLQDANKRYFFDTLPPVLVFHLKRFQQIGSRWSVTMRKIDDFVKFEEEIDVTDFVVPSEKVGDADDEDGLLSNENERKKYRLYGVVVHQG-SLYNGHYIAYV 1140          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A397S2V4_9GLOM (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397S2V4_9GLOM)

HSP 1 Score: 61.2 bits (147), Expect = 6.910e-8
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  232 VLSDASRRFFFLRLPPVVVFHVQRFEAVGG---VRLMKRSDAVEFGETVELGKCVARK------------------------PGEPKARWLYALVAVVVHLGASLSSGHYIAYV 492
            +L  A +R+ F  LPPV+VFH++RF+ VGG   V + K  D V F E +++G  V                           P + K    Y L  VVVHLG SL +GHYIAYV
Sbjct:  681 MLRKAYKRYLFDSLPPVLVFHLKRFQQVGGRWSVSMRKIDDFVAFDEELDVGDFVVPPEIEKKDEENGINNGHIIDNETQSLPKQNKQNTKYRLYGVVVHLG-SLYNGHYIAYV 793          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A2Z6QUH0_9GLOM (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QUH0_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 1.720e-7
Identity = 44/114 (38.60%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  232 VLSDASRRFFFLRLPPVVVFHVQRFEAVGG---VRLMKRSDAVEFGETVELGKCVA----RKPGEP--------------------KARWLYALVAVVVHLGASLSSGHYIAYV 492
            +L  A +R+ F  LPPV+VFH++RF+ VGG   V + K  D V F E +++G  V      K  E                     K    Y L  VVVHLG SL +GHYIAYV
Sbjct:  633 ILRKAYKRYLFDSLPPVLVFHLKRFQQVGGRWSVSMKKIDDFVAFDEELDVGDFVVPPEIEKKNEENGVNNGHIIDGNTHSLSKQNKQHTKYRLYGVVVHLG-SLYNGHYIAYV 745          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A397U9G4_9GLOM (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U9G4_9GLOM)

HSP 1 Score: 59.7 bits (143), Expect = 2.370e-7
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  232 VLSDASRRFFFLRLPPVVVFHVQRFEAVGG---VRLMKRSDAVEFGETVELGKCV------------------ARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYV 492
            +L  A +R+ F  LPPV+VFH++RF+ VGG   V + K  D V F E +++   +                  +  P E +    Y L  VVVHLG SL +GHYIAYV
Sbjct:  725 ILRKARKRYLFDSLPPVLVFHLKRFQQVGGRFSVSMKKIDDFVSFEEEIDVRDFIVPPGSEGEEMEDEDDESGSELPSESR-NTKYRLYGVVVHLG-SLYNGHYIAYV 830          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A372QTT2_9GLOM (Ubiquitin carboxyl-terminal hydrolase n=9 Tax=Rhizophagus TaxID=1129544 RepID=A0A372QTT2_9GLOM)

HSP 1 Score: 59.7 bits (143), Expect = 2.370e-7
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  232 VLSDASRRFFFLRLPPVVVFHVQRFEAVGG---VRLMKRSDAVEFGETVELGKCVARKPGEPK------------------------ARWLYALVAVVVHLGASLSSGHYIAYV 492
            +L  A +R+ F  LPPV+VFH++RF+ VGG   V + K  D V F E +++G  V     E K                            Y L  VVVHLG SL +GHYIAYV
Sbjct:  729 ILRKAYKRYLFDSLPPVLVFHLKRFQQVGGRWSVSMKKIDDFVAFDEELDVGDFVVPPEIEKKNENGINNGHIIDDNNTHSLLKQNKKHTKYRLYGVVVHLG-SLYNGHYIAYV 841          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A0K2UGW7_LEPSM (Ubiquitin carboxylterminal hydrolase 1like [Bombus terrestris] n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UGW7_LEPSM)

HSP 1 Score: 56.2 bits (134), Expect = 3.400e-6
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  235 LSDASRRFFFLRLPPVVVFHVQRFEAVGGVRLMKRSD---AVEFGETVELGKCVARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYVR 495
            L++A R   +  LP ++V  ++RF A G    M + +      F       KC  +   EP+    Y L AV++HLG +L+SGHYI+YVR
Sbjct:  270 LNEAQRSVTYELLPKIMVLQLKRFTATGSKTYMSKINDYIPTPFSMDCFCTKCTDKSSREPRHH--YRLYAVIMHLGGTLASGHYISYVR 357          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A5J9W8M8_9POAL (USP domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W8M8_9POAL)

HSP 1 Score: 56.2 bits (134), Expect = 3.550e-6
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  238 SDASRRFFFLRLPPVVVFHVQRFEAVGGVRLMKRSDAVEFGETVELGKCVARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYVR 495
             DA +     +LPPV+  H++RF      ++ K +  V F E +++G+ +  +  E K    Y L  VV H+G SL+SGHY+AYVR
Sbjct:  394 KDADKTLVISKLPPVLTLHLKRFVRENNEQV-KVTGHVSFEENLDVGQFMDPR-SEDKDNSRYCLSGVVEHVGDSLNSGHYVAYVR 477          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A433A210_9FUNG (USP domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A210_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 1.200e-5
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  229 LVLSDASRRFFFLRLPPVVVFHVQRFEAVG----GVRLMKRSDAVEFGETVELGKCVARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYVR 495
            L + DA ++      P V+  H++RF+  G    G+   K    +EF ET++L + V+  PG+     LY L AV+VH+GAS +SGHY  +++
Sbjct:  300 LSMVDARKQMTIHHAPMVLAVHLKRFQFGGYSQFGMDGEKIDKHIEFSETLDLHEHVS--PGQESDIGLYRLYAVLVHVGASCTSGHYHCFIK 390          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: A0A433QLH2_9FUNG (USP domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QLH2_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-5
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  229 LVLSDASRRFFFLRLPPVVVFHVQRFEAVG----GVRLMKRSDAVEFGETVELGKCVARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYVR 495
            L + DA ++      P V+  H++RF+  G    G+   K    +EF ET++L + V+  PG+     LY L AV+VH+GAS +SGHY  +++
Sbjct:  355 LSMVDARKQMTIHHAPMVLAVHLKRFQFGGYSQFGMDGEKIDKHIEFSETLDLHEHVS--PGQESDIGLYRLYAVLVHVGASCTSGHYHCFIK 445          
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Match: D2VYU4_NAEGR (Ubiquitinyl hydrolase 1 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VYU4_NAEGR)

HSP 1 Score: 53.9 bits (128), Expect = 2.380e-5
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  235 LSDASRRFFFLRLPPVVVFHVQRFEAVGGVR--LMKRSDAVEFGETVELGKCVARKPGEPKARWLYALVAVVVHLGASLSSGHYIAYVR 495
            L DA +   FL+LPPV++ H++RFE    +R  + K +D  EF   ++LGK ++    + K    Y L +V+VH G  +S GHY  + R
Sbjct:  383 LQDAKKGTNFLKLPPVLMLHLKRFE-YDYIRDLIYKINDRYEFPLEIDLGKYLSEDSEQKKEDNTYVLFSVLVHSG-DVSGGHYYNFAR 469          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66168.16062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A397JX47_9GLOM2.450e-942.16Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epiga... [more]
A0A397S2V4_9GLOM6.910e-837.72Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glom... [more]
A0A2Z6QUH0_9GLOM1.720e-738.60Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Rhiz... [more]
A0A397U9G4_9GLOM2.370e-737.96Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Giga... [more]
A0A372QTT2_9GLOM2.370e-737.72Ubiquitin carboxyl-terminal hydrolase n=9 Tax=Rhiz... [more]
A0A0K2UGW7_LEPSM3.400e-635.56Ubiquitin carboxylterminal hydrolase 1like [Bombus... [more]
A0A5J9W8M8_9POAL3.550e-637.21USP domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A433A210_9FUNG1.200e-535.48USP domain-containing protein (Fragment) n=1 Tax=J... [more]
A0A433QLH2_9FUNG1.280e-535.48USP domain-containing protein (Fragment) n=1 Tax=J... [more]
D2VYU4_NAEGR2.380e-537.08Ubiquitinyl hydrolase 1 n=1 Tax=Naegleria gruberi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66168contigM-pyrifera_M_contig66168:11..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue6.7e-07
Seed eggNOG ortholog218851.Aquca_034_00162.1
Preferred nameUBP2
KEGG koko:K11844
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009987,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs37MAY@33090,3G74P@35493,COG5560@1,KOG1873@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.3037882-CDS-M-pyrifera_M_contig66168:10..5051622816551.3037882-CDS-M-pyrifera_M_contig66168:10..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66168 11..505 -
1692278041.8522363-CDS-M-pyrifera_M_contig66168:10..5051692278041.8522363-CDS-M-pyrifera_M_contig66168:10..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66168 11..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66168.16062.1prot_M-pyrifera_M_contig66168.16062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66168 11..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66168.16062.1

>prot_M-pyrifera_M_contig66168.16062.1 ID=prot_M-pyrifera_M_contig66168.16062.1|Name=mRNA_M-pyrifera_M_contig66168.16062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MKEEEEEEEGEEDDNEEKEEVEVEGEEEVEEEAEVEGGEEGVVETEECVS
SSSSSSSSSSSSSSSTPPPPSSSPLPLVLSDASRRFFFLRLPPVVVFHVQ
RFEAVGGVRLMKRSDAVEFGETVELGKCVARKPGEPKARWLYALVAVVVH
LGASLSSGHYIAYVR
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mRNA from alignment at M-pyrifera_M_contig66168:11..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66168.16062.1 ID=mRNA_M-pyrifera_M_contig66168.16062.1|Name=mRNA_M-pyrifera_M_contig66168.16062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig66168:11..505- (Macrocystis pyrifera P11B4 male)
ATGAAAGAGGAAGAGGAAGAAGAAGAAGGAGAGGAAGATGATAACGAAGA GAAAGAAGAGGTAGAGGTAGAAGGGGAGGAGGAGGTGGAGGAGGAAGCAG AGGTGGAAGGAGGGGAGGAGGGAGTGGTGGAGACAGAAGAGTGTGTGTCA TCGTCCTCTTCATCTTCCTCATCTTCCTCTTCTTCCTCCTCCTCCACACC CCCTCCCCCTTCGTCTTCTCCACTTCCGTTGGTGTTGAGTGATGCGAGTC GCCGATTCTTTTTCCTCCGCCTGCCTCCGGTTGTAGTGTTTCATGTGCAG CGTTTCGAGGCTGTGGGAGGTGTGCGATTGATGAAGCGAAGCGATGCGGT GGAGTTTGGGGAGACAGTGGAGTTGGGCAAATGTGTGGCAAGGAAACCAG GAGAACCAAAGGCGCGCTGGCTCTATGCCCTGGTGGCAGTGGTGGTGCAC CTCGGTGCCTCACTCTCCAGTGGTCACTACATTGCCTACGTCAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66168:11..505-

>mRNA_M-pyrifera_M_contig66168.16062.1 ID=mRNA_M-pyrifera_M_contig66168.16062.1|Name=mRNA_M-pyrifera_M_contig66168.16062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig66168:11..505- (Macrocystis pyrifera P11B4 male)
ATGAAAGAGGAAGAGGAAGAAGAAGAAGGAGAGGAAGATGATAACGAAGA
GAAAGAAGAGGTAGAGGTAGAAGGGGAGGAGGAGGTGGAGGAGGAAGCAG
AGGTGGAAGGAGGGGAGGAGGGAGTGGTGGAGACAGAAGAGTGTGTGTCA
TCGTCCTCTTCATCTTCCTCATCTTCCTCTTCTTCCTCCTCCTCCACACC
CCCTCCCCCTTCGTCTTCTCCACTTCCGTTGGTGTTGAGTGATGCGAGTC
GCCGATTCTTTTTCCTCCGCCTGCCTCCGGTTGTAGTGTTTCATGTGCAG
CGTTTCGAGGCTGTGGGAGGTGTGCGATTGATGAAGCGAAGCGATGCGGT
GGAGTTTGGGGAGACAGTGGAGTTGGGCAAATGTGTGGCAAGGAAACCAG
GAGAACCAAAGGCGCGCTGGCTCTATGCCCTGGTGGCAGTGGTGGTGCAC
CTCGGTGCCTCACTCTCCAGTGGTCACTACATTGCCTACGTCAGAATGAA
AGAGGAAGAGGAAGAAGAAGAAGGAGAGGAAGATGATAACGAAGAGAAAG
AAGAGGTAGAGGTAGAAGGGGAGGAGGAGGTGGAGGAGGAAGCAGAGGTG
GAAGGAGGGGAGGAGGGAGTGGTGGAGACAGAAGAGTGTGTGTCATCGTC
CTCTTCATCTTCCTCATCTTCCTCTTCTTCCTCCTCCTCCACACCCCCTC
CCCCTTCGTCTTCTCCACTTCCGTTGGTGTTGAGTGATGCGAGTCGCCGA
TTCTTTTTCCTCCGCCTGCCTCCGGTTGTAGTGTTTCATGTGCAGCGTTT
CGAGGCTGTGGGAGGTGTGCGATTGATGAAGCGAAGCGATGCGGTGGAGT
TTGGGGAGACAGTGGAGTTGGGCAAATGTGTGGCAAGGAAACCAGGAGAA
CCAAAGGCGCGCTGGCTCTATGCCCTGGTGGCAGTGGTGGTGCACCTCGG
TGCCTCACTCTCCAGTGGTCACTACATTGCCTACGTCAGA
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