mRNA_M-pyrifera_M_contig66.16025.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66.16025.1
Unique NamemRNA_M-pyrifera_M_contig66.16025.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66.16025.1 vs. uniprot
Match: A0A6C0HXP8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HXP8_9ZZZZ)

HSP 1 Score: 63.2 bits (152), Expect = 5.900e-8
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    7 LCSHDSCPRRRTFNVEGKLAAYCKQHAKDGMVDVRSRRCLYNSCTKHPNFNVIGK 171
            +C H  C  R  +N EG+   YC  H ++GMVDV+S RC++  C K PNFN  G+
Sbjct:    1 MCIHPGCKTRSIYNKEGERPMYCGIHRQEGMVDVKSNRCIHECCRKIPNFNKEGE 55
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66.16025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C0HXP8_9ZZZZ5.900e-845.45Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66contigM-pyrifera_M_contig66:1780..2469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size690
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.9576714-CDS-M-pyrifera_M_contig66:1779..24691622816548.9576714-CDS-M-pyrifera_M_contig66:1779..2469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66 1780..2469 -
1692278040.5712688-CDS-M-pyrifera_M_contig66:1779..24691692278040.5712688-CDS-M-pyrifera_M_contig66:1779..2469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66 1780..2469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66.16025.1prot_M-pyrifera_M_contig66.16025.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66 1780..2469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66.16025.1

>prot_M-pyrifera_M_contig66.16025.1 ID=prot_M-pyrifera_M_contig66.16025.1|Name=mRNA_M-pyrifera_M_contig66.16025.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=230bp
MGLCSHDSCPRRRTFNVEGKLAAYCKQHAKDGMVDVRSRRCLYNSCTKHP
NFNVIGKKMPAYCRQHAEDGMMDVRHMCLHHACAKRPTFNFEGSKSAVCC
KQHAQKGMINVLNRRCSHDSCSNLPTFIDERRKSATYCSQHAESGMVDVR
GKRCARKFCTRQPTYDVQGSKSAIFCKQHAEKGMVNVSSRRCGIDSCTTK
PIFNVEGSKTAAYCKKHAADGMVDVFNTRC
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mRNA from alignment at M-pyrifera_M_contig66:1780..2469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66.16025.1 ID=mRNA_M-pyrifera_M_contig66.16025.1|Name=mRNA_M-pyrifera_M_contig66.16025.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig66:1780..2469- (Macrocystis pyrifera P11B4 male)
ATGGGGCTATGCTCACATGACTCGTGCCCACGGCGACGGACCTTCAACGT
CGAAGGCAAGCTGGCGGCGTACTGCAAACAACATGCGAAGGACGGCATGG
TAGATGTTCGCAGCAGGCGCTGTTTGTATAACTCCTGCACGAAGCACCCG
AACTTCAATGTGATCGGCAAGAAGATGCCGGCGTACTGCAGGCAACACGC
TGAGGACGGCATGATGGATGTTCGCCACATGTGCTTGCATCACGCCTGTG
CGAAGCGGCCGACCTTCAACTTCGAGGGCAGCAAGTCCGCGGTGTGCTGC
AAACAGCATGCTCAGAAGGGCATGATAAACGTCCTTAATAGGCGTTGTTC
ACATGACTCTTGCTCGAACCTACCCACCTTCATTGACGAGAGGAGGAAGT
CAGCCACGTACTGCAGTCAGCATGCTGAGAGCGGCATGGTGGACGTTCGC
GGCAAGCGCTGCGCACGTAAATTTTGCACGAGGCAGCCGACATATGATGT
CCAGGGCAGCAAGTCGGCGATATTCTGCAAACAACATGCCGAAAAGGGCA
TGGTTAATGTGAGCAGCAGGCGTTGTGGGATCGATTCCTGCACGACGAAG
CCGATCTTCAACGTCGAGGGGAGCAAGACGGCGGCTTACTGCAAGAAGCA
TGCTGCGGACGGCATGGTCGACGTCTTCAACACGCGTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66:1780..2469-

>mRNA_M-pyrifera_M_contig66.16025.1 ID=mRNA_M-pyrifera_M_contig66.16025.1|Name=mRNA_M-pyrifera_M_contig66.16025.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1380bp|location=Sequence derived from alignment at M-pyrifera_M_contig66:1780..2469- (Macrocystis pyrifera P11B4 male)
ATGGGGCTATGCTCACATGACTCGTGCCCACGGCGACGGACCTTCAACGT
CGAAGGCAAGCTGGCGGCGTACTGCAAACAACATGCGAAGGACGGCATGG
TAGATGTTCGCAGCAGGCGCTGTTTGTATAACTCCTGCACGAAGCACCCG
AACTTCAATGTGATCGGCAAGAAGATGCCGGCGTACTGCAGGCAACACGC
TGAGGACGGCATGATGGATGTTCGCCACATGTGCTTGCATCACGCCTGTG
CGAAGCGGCCGACCTTCAACTTCGAGGGCAGCAAGTCCGCGGTGTGCTGC
AAACAGCATGCTCAGAAGGGCATGATAAACGTCCTTAATAGGCGTTGTTC
ACATGACTCTTGCTCGAACCTACCCACCTTCATTGACGAGAGGAGGAAGT
CAGCCACGTACTGCAGTCAGCATGCTGAGAGCGGCATGGTGGACGTTCGC
GGCAAGCGCTGCGCACGTAAATTTTGCACGAGGCAGCCGACATATGATGT
CCAGGGCAGCAAGTCGGCGATATTCTGCAAACAACATGCCGAAAAGGGCA
TGGTTAATGTGAGCAGCAGGCGTTGTGGGATCGATTCCTGCACGACGAAG
CCGATCTTCAACGTCGAGGGGAGCAAGACGGCGGCTTACTGCAAGAAGCA
TGCTGCGGACGGCATGGTCGACGTCTTCAACACGCGTTGCATGGGGCTAT
GCTCACATGACTCGTGCCCACGGCGACGGACCTTCAACGTCGAAGGCAAG
CTGGCGGCGTACTGCAAACAACATGCGAAGGACGGCATGGTAGATGTTCG
CAGCAGGCGCTGTTTGTATAACTCCTGCACGAAGCACCCGAACTTCAATG
TGATCGGCAAGAAGATGCCGGCGTACTGCAGGCAACACGCTGAGGACGGC
ATGATGGATGTTCGCCACATGTGCTTGCATCACGCCTGTGCGAAGCGGCC
GACCTTCAACTTCGAGGGCAGCAAGTCCGCGGTGTGCTGCAAACAGCATG
CTCAGAAGGGCATGATAAACGTCCTTAATAGGCGTTGTTCACATGACTCT
TGCTCGAACCTACCCACCTTCATTGACGAGAGGAGGAAGTCAGCCACGTA
CTGCAGTCAGCATGCTGAGAGCGGCATGGTGGACGTTCGCGGCAAGCGCT
GCGCACGTAAATTTTGCACGAGGCAGCCGACATATGATGTCCAGGGCAGC
AAGTCGGCGATATTCTGCAAACAACATGCCGAAAAGGGCATGGTTAATGT
GAGCAGCAGGCGTTGTGGGATCGATTCCTGCACGACGAAGCCGATCTTCA
ACGTCGAGGGGAGCAAGACGGCGGCTTACTGCAAGAAGCATGCTGCGGAC
GGCATGGTCGACGTCTTCAACACGCGTTGC
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