mRNA_M-pyrifera_M_contig6567.15957.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI) HSP 1 Score: 189 bits (481), Expect = 5.790e-58 Identity = 96/142 (67.61%), Postives = 112/142 (78.87%), Query Frame = 1
Query: 103 AEAEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKICKVGGRKL 528
AE +KMLEFYFG SNF WDRFMQ KAGKMGE L+D+S+L+TFNKLK +VK+A L + A++AR EASPSLRVSEDKKQIGR MTEE ER+ARTVQTKGY K+S + IED+E LF++ GKA YVKICK GG KL
Sbjct: 52 AETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKL 193
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.200e-19 Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 100 DAEAEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMV 297
+AE +KMLEFYFG SNF WDRFMQ KAGKMGE L+D+S+L+TFNKLK +VK+A L +A A+V
Sbjct: 224 EAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALV 289
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A7S0BRU6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRU6_9RHOD) HSP 1 Score: 69.7 bits (169), Expect = 1.080e-11 Identity = 43/139 (30.94%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 94 KEDAEAEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKICK 510
K + E ++ + +E+YF N D+F++GK G +D+SI+++FN++ L + ++D A+A E+S L++SED++++ R P+ E E R V G+S D+ +I+D+ +F GK + VK+ K
Sbjct: 4 KSELEDKVRRQVEYYFSDVNLPKDKFLKGKVSDDPNGYVDLSIIISFNRMDQL--KVSVED------TAKALESSEILQLSEDRQRVKRSTPLVELGRFEE--RAVYVSGFSSDASPDIDDVRKVFEAFGKVLSVKLRK 132
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A835Z2D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.080e-11 Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query: 109 AEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSK-VNIEDIEALFAELGKAIYVKICKVGGRK 525
A++ + LEFYFG SNF+ D+F++ + + L+ +++L+TFNKLK++ AD +A+V AA+ S L VSED ++GR + TE D R RT+ KG+ D ++IE + +F G+ YV I + +K
Sbjct: 93 AKVQRQLEFYFGDSNFNRDKFLREQVKLSEDSLVPLTVLMTFNKLKSMT-------AD-EAVVLAAAKQSEVLSVSEDGLRVGRGDGATELRYDAR-PRTIYAKGFGYDCPDLSIEFVTDMFKVFGEVGYVYIRRTMDKK 223
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A452EJL2_CAPHI (La-related protein 7 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452EJL2_CAPHI) HSP 1 Score: 68.6 bits (166), Expect = 2.470e-10 Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1
Query: 76 EEAPISKEDAEAEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKI 504
EE+ K++ A+IMK ++F+FG +N DRF+Q + K +G +D+S+L++FNK+K L +L +ARA ++S + + + +I RK+P+ E DE RTV + KD VN IE +F + +Y+ I
Sbjct: 13 EESIEKKKEVLADIMKQVDFWFGDANLHKDRFLQEQIEKSRDGYVDISLLVSFNKMKKLTTDGKL--------IARALKSSAVVELDLEGTRIRRKKPLGERPKDED-ERTVYVELLPKD--VNHSWIERVFGKCSNVVYISI 144
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: UPI000644C30E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C30E) HSP 1 Score: 68.2 bits (165), Expect = 2.840e-10 Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 115 IMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKICK 510
I+K +E+YF SN D+F++G+ K G +++ I+ +FNK+KTL QL V+ A ++S L VSED K + R +P+ + E + +T+ +KG+ D+ IE ++A F G + V++ K
Sbjct: 35 IVKQVEYYFSDSNLPADKFLKGEVAKNPNGFVNIDIIASFNKMKTLTLDLQL--------VSDALKSSKKLEVSEDGKTVRRVDPLPDTELINK--KTLYSKGWPLDT-TTIETVQAFFKPYGNVLSVRLRK 155
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: Q1RMJ4_BOVIN (La-related protein 7 (Fragment) n=2 Tax=Bovidae TaxID=9895 RepID=Q1RMJ4_BOVIN) HSP 1 Score: 64.3 bits (155), Expect = 2.270e-9 Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 109 AEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKI 504
A+I+K ++F+FG +N DRF++ + K +G +D+S+L++FNK+K L +L +ARA ++S + + + +I RK+P+ E DE RTV + K+ VN IE +F + G +Y+ I
Sbjct: 34 ADIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL--------IARALKSSAVVELDLEGTRIRRKKPLGERPKDED-ERTVYVELLPKN--VNHSWIERVFGKCGNVVYISI 154
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A452EJ43_CAPHI (La-related protein 7 n=2 Tax=Capra hircus TaxID=9925 RepID=A0A452EJ43_CAPHI) HSP 1 Score: 65.5 bits (158), Expect = 2.870e-9 Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 112 EIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKI 504
+IMK ++F+FG +N DRF+Q + K +G +D+S+L++FNK+K L +L +ARA ++S + + + +I RK+P+ E DE RTV + KD VN IE +F + +Y+ I
Sbjct: 27 DIMKQVDFWFGDANLHKDRFLQEQIEKSRDGYVDISLLVSFNKMKKLTTDGKL--------IARALKSSAVVELDLEGTRIRRKKPLGERPKDED-ERTVYVELLPKD--VNHSWIERVFGKCSNVVYISI 146
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: G1SSB3_RABIT (La-related protein 7 n=3 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1SSB3_RABIT) HSP 1 Score: 65.1 bits (157), Expect = 4.030e-9 Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 109 AEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVNIEDIEALFAELGKAIYVKI 504
A+I K ++F+FG +N DRF++ + K +G +D+S+LL+FNK+K L +L +ARA ++S + + + +I RK+P+ E DE RTV + K+ VN IE +F + G +YV I
Sbjct: 35 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLLSFNKMKKLTTDGKL--------IARALKSSAIVELDLEGTRIRRKKPLGERPKDED-ERTVYVELLPKN--VNHSWIERVFGKCGNVVYVSI 155
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Match: A0A813CCZ0_9DINO (La protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CCZ0_9DINO) HSP 1 Score: 64.3 bits (155), Expect = 6.240e-9 Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 109 AEIMKMLEFYFGGSNFSWDRFMQGKAGKMGEGLIDVSILLTFNKLKTLVKRAQLDDADADAMVARAAEASPSLRVSEDKKQIGRKEPMTEEESDERLARTVQTKGYSKDSKVN 447
A I K +E+YF +NF D+ ++G A +G +DVS LLTFN+LK L + A+VA A E S +++S DKK++ R +P+ SD+ RTV KG+ D+K++
Sbjct: 9 AAIKKQVEYYFNDANFRRDKHLRGIADADPQGYVDVSALLTFNRLKAL--------SSDPAVVAAALEDSDIVQLSADKKKLRRTKPLPL--SDDSADRTVYMKGFPVDAKLD 111 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6567.15957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6567.15957.1 >prot_M-pyrifera_M_contig6567.15957.1 ID=prot_M-pyrifera_M_contig6567.15957.1|Name=mRNA_M-pyrifera_M_contig6567.15957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp EAESKPDEDKKEETKEAKPVAVEKKEEAPISKEDAEAEIMKMLEFYFGGSback to top mRNA from alignment at M-pyrifera_M_contig6567:4308..7266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6567.15957.1 ID=mRNA_M-pyrifera_M_contig6567.15957.1|Name=mRNA_M-pyrifera_M_contig6567.15957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2959bp|location=Sequence derived from alignment at M-pyrifera_M_contig6567:4308..7266- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6567:4308..7266- >mRNA_M-pyrifera_M_contig6567.15957.1 ID=mRNA_M-pyrifera_M_contig6567.15957.1|Name=mRNA_M-pyrifera_M_contig6567.15957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig6567:4308..7266- (Macrocystis pyrifera P11B4 male)back to top |