mRNA_M-pyrifera_M_contig65553.15936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65553.15936.1
Unique NamemRNA_M-pyrifera_M_contig65553.15936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: L8H549_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H549_ACACA)

HSP 1 Score: 99.4 bits (246), Expect = 4.620e-23
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   61 AHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAIFDDFGCDMSHCIGTRRAIAALSASGHLIE 537
            AH    +   P ++ VCEIGFNAGHSA   L ++ D+ + SF++G H Y   AA+ + A FPGR  +++GDS   +P F+    ++H    CD+  +DG H         +  +D  + R       + + DD  C   HC   R A   L A+G + E
Sbjct:    6 AHYYTAVGRLPFVRTVCEIGFNAGHSAAVWLTSQPDLRLQSFDIGMHGYVGTAANHIKAQFPGRFDIKLGDSVQAVPGFV----QRHPGFVCDVLHVDGAHE------GDIPRLDLANMRALARPHSILLMDDLQCPFPHCRAPRTAWDGLKAAGEIEE 154          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: T1FJP1_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FJP1_HELRO)

HSP 1 Score: 101 bits (252), Expect = 8.040e-23
Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   28 DGHTGHSPGKIAHL-LHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAIFDDF 462
            DGHT   P +  HL LH +ASR  ++ VCE GFN GHS+   + AR    + SF++G H+Y+    S L+  +PGR +  +GDS+I +PKF+K+    H   +C+++F+DG H+Y +I    + +   +S + N     + +FDDF
Sbjct:   90 DGHTAMFPTE--HLALHFLASREFVRSVCETGFNYGHSSYTFMTARSGNKILSFDIGHHAYTSVIMSYLNRTYPGRFEGVLGDSSITLPKFVKE----HPNHRCNLFFVDGSHTY-KIGYSDLKSFSKISDKNN-----IIVFDDF 223          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: A0A7S1RWT2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RWT2_ALECA)

HSP 1 Score: 94.4 bits (233), Expect = 1.930e-20
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   52 GKIAHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAIFDDFGCDMSHCIGTRRAIAALSASG 525
            G+ A   H IA++P +K++CEIGFNAGHSA  +L +  + H+ SF+LG   YS  A + +   F  R  + +G+ST+ +P F     E+  +V+CD+  +DGGH +    AD  +   A++   +QH   + + DD  C    C G   A     A+G
Sbjct:   68 GEEADYYHRIAAQPWVKNICEIGFNAGHSAALLLTSNPNAHLYSFDLGVMRYSLPAVAFMKRHFGDRFTITVGNSTVTLPSFA----EQRPDVKCDLMIVDGGHQFYISRADIAN-FQALAN-PSQH---LLLVDDTRCTRMICEGPEMAWREAVAAG 216          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: R7TD35_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TD35_CAPTE)

HSP 1 Score: 94.4 bits (233), Expect = 3.280e-20
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   79 IASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAIFDDF 462
            +A  P +K +CE GFNAGHS L  LAA++   V SF+LG H Y+   A  L + +PGRL +  GDST  +P+F       H EV+CD+  +DGGHS + I  D     D V+ R+      + +FDD+
Sbjct:  125 LAQLPFVKTICETGFNAGHSTLIWLAAKNGTKVYSFDLGSHKYAKKMAQHLQSMYPGRLIVTWGDSTKTLPQF----HGAHPEVKCDLIIVDGGHS-VPIATD-----DFVNFRRMASSSNIVVFDDY 242          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: A0A485LBD3_9STRA (Aste57867_18702 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBD3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.520e-20
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   13 GFAVYDGHTGHSPGKIAHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAI 402
            G ++++GHT   P     L  +++    ++   +IGFNAGHSA+ +L+A  ++H+TSF+L  H+Y   AA+ +DA FPGR  L  GDST+ IP ++ D          D  F+DGGHS     AD  + +
Sbjct:  106 GHSMFEGHTSLFPTSERILRSLVSESTTIRRAMQIGFNAGHSAMTLLSANSEMHLTSFDLVEHAYVSKAAAFVDAAFPGRHVLIAGDSTVTIPAYVTDE-------PFDFIFVDGGHSLEVATADLANCL 228          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: D7FK26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK26_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.160e-19
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   25 YDGHTGHSPGKIAHLLHVIASRPD-MKHVCEIGFNAGHSALA-MLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQ-CDMWFIDGGHSYLQILADTMH 396
            ++GHTG  P K+  L  V     D +K +CE+GFNAGHS+L  +L +     + +F+LG H Y  HA   L A FPGRL++ IGDS++ IP ++        E Q C++ F+DG HS     AD ++
Sbjct:  154 FEGHTGGFPRKVEALGAVSRDGGDRVKKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMRHALDFLQAMFPGRLEVLIGDSSVTIPAYVVAEAAAGREPQGCNILFVDGDHSEDGAYADLVN 280          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: A0A7S3Y0C8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0C8_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 2.440e-19
Identity = 54/128 (42.19%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   28 DGHTGHSPGKIAHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELG--------GHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILAD 387
            +GH+G  P KI     ++     M  VCEIGFNAGHSALA LAA     V SF+LG        G +YS  A   +   FPGR  L IG+S+  +P F + S       +CD+  +DG HSY Q L D
Sbjct:   21 EGHSGQYPEKIKAFQRLVQENQSMSTVCEIGFNAGHSALAFLAAGPRTQVVSFDLGTNRAFKGSGQTYSARAEDFVSGVFPGRSFLIIGNSSYTVPTFAEFSHP----FRCDLILVDGEHSYEQALDD 144          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: A0A7S3Y0D5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0D5_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 2.680e-19
Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   28 DGHTGHSPGKIAHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELG--------GHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILAD 387
            +GH+G  PGKI     ++     M  VCEIGFNAGHSA+A LAA   + V SF+LG        G +Y+  A   + + FPGR  L +G+++  +P F + S       +CD   +DGGHSY Q + D
Sbjct:  136 EGHSGQYPGKIKVFQRLVQEYRSMSTVCEIGFNAGHSAMAFLAASSRIRVVSFDLGTNRAPKGSGQTYAARAQDFVSSVFPGRSILVVGNASYTVPTFAEFSHP----FRCDFILVDGGHSYEQAVDD 259          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: R7VJW1_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VJW1_CAPTE)

HSP 1 Score: 92.0 bits (227), Expect = 3.550e-19
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 DGHTGHSPGKIAHLLHV-IASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAIFDDF 462
            +GH+G    +   +++V +A  P +K +CE GFNAGHS L  L A++   V SF+LG H Y+   A  L + +PGRL +  GDST  +P+F K     H EV CD+  +DGGH  ++I  D       +++ +N     + +FDD+
Sbjct:  120 EGHSGQVMEQ--QMVYVKLAQLPFVKTICETGFNAGHSTLIWLTAKNGTKVYSFDLGNHGYAKTMAQHLQSQYPGRLTVTWGDSTKTLPEFRKS----HPEVTCDLIIVDGGH-LVRIATDDHSNFRRMASLEN-----IVVFDDY 253          
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Match: A0A7S4DA05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA05_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 6.120e-19
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   28 DGHTGHSPGKIAHLLHVIASRPDMKHVCEIGFNAGHSALAMLAARDDVHVTSFELG--------GHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFIKDSMEKHGEVQCDMWFIDGGHSYLQILAD 387
            +GH+G  P KI     ++     M  VCEIGFNAGHSALA LAA     V SF+LG        G +Y+  A   + + FPGR  L +G+++  +P F + S       +CD   +DGGHSY Q + D
Sbjct:   21 EGHSGQYPEKIKAFQRLVQENQSMSTVCEIGFNAGHSALAFLAAGPRTQVVSFDLGTNRAPKGSGQTYAARAQDFVSSVFPGRSILVVGNASYTVPTFAEFSHP----FRCDFILVDGGHSYEQAVDD 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65553.15936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H549_ACACA4.620e-2333.33Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
T1FJP1_HELRO8.040e-2337.67Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A7S1RWT2_ALECA1.930e-2034.81Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
R7TD35_CAPTE3.280e-2041.41Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A485LBD3_9STRA4.520e-2037.69Aste57867_18702 protein n=1 Tax=Aphanomyces stella... [more]
D7FK26_ECTSI2.160e-1940.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y0C8_HETAK2.440e-1942.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y0D5_HETAK2.680e-1939.84Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
R7VJW1_CAPTE3.550e-1936.99Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A7S4DA05_HETAK6.120e-1939.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65553contigM-pyrifera_M_contig65553:494..1030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog6412.HelroP183447
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.6078753-CDS-M-pyrifera_M_contig65553:493..10301622816543.6078753-CDS-M-pyrifera_M_contig65553:493..1030Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65553 494..1030 -
1692278037.483633-CDS-M-pyrifera_M_contig65553:493..10301692278037.483633-CDS-M-pyrifera_M_contig65553:493..1030Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65553 494..1030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65553.15936.1prot_M-pyrifera_M_contig65553.15936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65553 494..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65553.15936.1

>prot_M-pyrifera_M_contig65553.15936.1 ID=prot_M-pyrifera_M_contig65553.15936.1|Name=mRNA_M-pyrifera_M_contig65553.15936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
MLGSGFAVYDGHTGHSPGKIAHLLHVIASRPDMKHVCEIGFNAGHSALAM
LAARDDVHVTSFELGGHSYSYHAASVLDAWFPGRLQLRIGDSTIEIPKFI
KDSMEKHGEVQCDMWFIDGGHSYLQILADTMHAIDAVSTRKNQHRKWVAI
FDDFGCDMSHCIGTRRAIAALSASGHLIE
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mRNA from alignment at M-pyrifera_M_contig65553:494..1030-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65553.15936.1 ID=mRNA_M-pyrifera_M_contig65553.15936.1|Name=mRNA_M-pyrifera_M_contig65553.15936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig65553:494..1030- (Macrocystis pyrifera P11B4 male)
ATGTTGGGCTCTGGTTTTGCCGTTTATGACGGACATACTGGTCACAGTCC TGGGAAAATTGCTCATTTACTCCATGTGATTGCTTCTCGTCCTGACATGA AGCATGTTTGTGAAATTGGGTTCAATGCAGGCCACAGTGCATTGGCAATG TTGGCTGCTCGTGATGACGTCCATGTCACTTCGTTTGAACTTGGCGGTCA CTCTTACTCCTACCACGCAGCCAGTGTCTTGGACGCTTGGTTTCCTGGTC GTCTGCAACTCCGGATTGGTGATTCAACGATTGAAATCCCCAAGTTTATT AAAGACTCGATGGAGAAGCATGGGGAGGTACAGTGTGACATGTGGTTCAT TGATGGCGGACATTCCTATCTCCAGATTCTTGCTGACACAATGCATGCTA TCGATGCAGTATCAACACGGAAAAATCAACATCGAAAATGGGTTGCAATT TTTGATGACTTTGGATGTGATATGAGTCATTGTATCGGCACAAGGCGTGC CATCGCTGCACTTTCTGCATCTGGTCATTTGATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65553:494..1030-

>mRNA_M-pyrifera_M_contig65553.15936.1 ID=mRNA_M-pyrifera_M_contig65553.15936.1|Name=mRNA_M-pyrifera_M_contig65553.15936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig65553:494..1030- (Macrocystis pyrifera P11B4 male)
ATGTTGGGCTCTGGTTTTGCCGTTTATGACGGACATACTGGTCACAGTCC
TGGGAAAATTGCTCATTTACTCCATGTGATTGCTTCTCGTCCTGACATGA
AGCATGTTTGTGAAATTGGGTTCAATGCAGGCCACAGTGCATTGGCAATG
TTGGCTGCTCGTGATGACGTCCATGTCACTTCGTTTGAACTTGGCGGTCA
CTCTTACTCCTACCACGCAGCCAGTGTCTTGGACGCTTGGTTTCCTGGTC
GTCTGCAACTCCGGATTGGTGATTCAACGATTGAAATCCCCAAGTTTATT
AAAGACTCGATGGAGAAGCATGGGGAGGTACAGTGTGACATGTGGTTCAT
TGATGGCGGACATTCCTATCTCCAGATTCTTGCTGACACAATGCATGCTA
TCGATGCAGTATCAACACGGAAAAATCAACATCGAAAATGGGTTGCAATT
TTTGATGACTTTGGATGTGATATGAGTCATTGTATCGGCACAAGGCGTGC
CATCGCTGCACTTTCTGCATCTGGTCATTTGATTGAGATGTTGGGCTCTG
GTTTTGCCGTTTATGACGGACATACTGGTCACAGTCCTGGGAAAATTGCT
CATTTACTCCATGTGATTGCTTCTCGTCCTGACATGAAGCATGTTTGTGA
AATTGGGTTCAATGCAGGCCACAGTGCATTGGCAATGTTGGCTGCTCGTG
ATGACGTCCATGTCACTTCGTTTGAACTTGGCGGTCACTCTTACTCCTAC
CACGCAGCCAGTGTCTTGGACGCTTGGTTTCCTGGTCGTCTGCAACTCCG
GATTGGTGATTCAACGATTGAAATCCCCAAGTTTATTAAAGACTCGATGG
AGAAGCATGGGGAGGTACAGTGTGACATGTGGTTCATTGATGGCGGACAT
TCCTATCTCCAGATTCTTGCTGACACAATGCATGCTATCGATGCAGTATC
AACACGGAAAAATCAACATCGAAAATGGGTTGCAATTTTTGATGACTTTG
GATGTGATATGAGTCATTGTATCGGCACAAGGCGTGCCATCGCTGCACTT
TCTGCATCTGGTCATTTGATTGAG
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