mRNA_M-pyrifera_M_contig13843.6083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13843.6083.1
Unique NamemRNA_M-pyrifera_M_contig13843.6083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.570e-34
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYG 264
            L Q+GCCLAFS G PLLG+RHRKHV+R FSLAAQIL+ ++SPLA+LRAQLHLEVA+CEMDSDFLAK +SH+ KA  QDYG
Sbjct:  631 LLQEGCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLQSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACMQDYG 710          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A485KQ62_9STRA (Aste57867_10079 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ62_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.660e-22
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   22 SLAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGG 267
            +L QD C LA++V  PLL +  RKHV+R F  A  +LE +ESPL  LRAQ+H E A+CEM+SD+LAK S+H+ KA+  DYGG
Sbjct:  474 NLIQDICILAWNVAMPLLESHLRKHVHRLFQSATALLEDLESPLVALRAQMHFETAKCEMESDYLAKASTHVNKALALDYGG 555          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A3L6V9I7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V9I7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.450e-21
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGGEPIPPP 285
            L QD C  A++V  PL+ +  RKHV+R F  A  +LE +ESPL  LRAQ+H E A+CEM+ D+LAK S H+ KA++ DYGG P   P
Sbjct:  488 LIQDICLFAWNVALPLVESHLRKHVHRLFQSATALLEELESPLVALRAQMHFEAAKCEMECDYLAKASVHVNKALQLDYGGTPTEQP 574          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A024UJC2_9STRA (FHA domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJC2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.000e-21
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGG 267
            L QD C  A++V  PL+ +  RKHV+R F  A  +LE +ESPL  LRAQ+HLE A+CEMD D+LAK + H+ KA++ DYGG
Sbjct:  474 LIQDICLFAWNVALPLVESHLRKHVHRLFQSATSLLEELESPLVALRAQMHLETAKCEMDCDYLAKAAIHVNKALQLDYGG 554          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: W4H7H1_9STRA (FHA domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7H1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.730e-21
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGGEPIPPP 285
            L QD C  A++V  PL+ +  RKHV+R F  A  +LE +ESPL  LRAQ+H E A+CEM+ D+LAK S H+ KA++ DYGG P   P
Sbjct:  493 LIQDICLFAWNVALPLVESHLRKHVHRLFQSATTLLEELESPLVALRAQMHFESAKCEMECDYLAKASVHVNKALQLDYGGTPTEQP 579          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A1W0A8K3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8K3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.430e-21
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   22 SLAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGGEPIPPP 285
            +L QD C  A++V  PLL    RKHV+R F  A  +LE ++SPL +LRAQ+HLE A+CEM SD+LAK S H+ KA+  DYG     PP
Sbjct:   52 NLMQDICIFAWNVALPLLEPHLRKHVHRLFQAATALLEELDSPLVQLRAQMHLETAKCEMMSDYLAKASVHVNKALVLDYGESATTPP 139          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A1V9YIG9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIG9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.410e-19
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYG 264
            L QD C  A++V  PLL    RKHV+R F  A  +LE ++SPL  LRAQ+HLE A+CEM  D+LAK   H+ KAI  DYG
Sbjct:  426 LMQDICIYAWNVALPLLEPHLRKHVHRLFQTATSLLEELDSPLVMLRAQMHLETAKCEMKCDYLAKACVHVNKAIMLDYG 505          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: T0RW37_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RW37_SAPDV)

HSP 1 Score: 89.7 bits (221), Expect = 7.380e-19
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYG 264
            L QD C  A++V  PLL    RKHV+R F+    +LE ++SPL  LRAQ+HLE A+CEM  D+LAK S H+ KA+  DYG
Sbjct:  426 LMQDICIYAWNVALPLLEPHLRKHVHRLFTATTSLLEELDSPLVTLRAQMHLETAKCEMKCDYLAKASVHVNKALLLDYG 505          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A7S1XYU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYU5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.970e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   25 LAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYG 264
            L   G  L +++   LL    R+H +   +L A+IL+ +ESPL +LR Q+HLEVARCE+ +DF+A  ++H+ KA+  DYG
Sbjct:   98 LLHIGAVLIWNMAIGLLRPHLRRHCHAGLTLVAEILDMLESPLLRLRMQVHLEVARCELAADFVANANTHIQKAMALDYG 177          
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Match: A0A0D2JE12_9CHLO (Flagellar associated protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JE12_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.640e-12
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   46 LAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESPLAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDY 261
            LA++ G PLL    R+ V R F+ AA+ LE++ SPL +LRAQLHLE+ +CE D D L K +  + +A+  DY
Sbjct:  371 LAWNAGLPLLQPNTRRRVKRCFASAARALEAVASPLGRLRAQLHLELGKCEADDDALVKAAKEVHQALALDY 442          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13843.6083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G359_ECTSI5.570e-3476.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KQ62_9STRA1.660e-2256.10Aste57867_10079 protein n=1 Tax=Aphanomyces stella... [more]
A0A3L6V9I7_9STRA1.450e-2151.72Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024UJC2_9STRA2.000e-2154.32FHA domain-containing protein n=2 Tax=Aphanomyces ... [more]
W4H7H1_9STRA2.730e-2151.72FHA domain-containing protein n=8 Tax=Aphanomyces ... [more]
A0A1W0A8K3_9STRA9.430e-2152.27Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A1V9YIG9_9STRA5.410e-1953.75Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0RW37_SAPDV7.380e-1952.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1XYU5_9STRA5.970e-1443.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0D2JE12_9CHLO1.640e-1247.22Flagellar associated protein (Fragment) n=1 Tax=Mo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13843contigM-pyrifera_M_contig13843:1399..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D7G359
Preferred nameCFAP46
KEGG koko:K18626
Hectar predicted targeting categorysignal peptide
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs2C6EK@1,2QS2Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.3381264-CDS-M-pyrifera_M_contig13843:1398..15811622815827.3381264-CDS-M-pyrifera_M_contig13843:1398..1581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13843 1399..1581 +
1692277592.138442-CDS-M-pyrifera_M_contig13843:1398..15811692277592.138442-CDS-M-pyrifera_M_contig13843:1398..1581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13843 1399..1581 +
1622815827.348626-CDS-M-pyrifera_M_contig13843:1938..20401622815827.348626-CDS-M-pyrifera_M_contig13843:1938..2040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13843 1939..2040 +
1692277592.1523302-CDS-M-pyrifera_M_contig13843:1938..20401692277592.1523302-CDS-M-pyrifera_M_contig13843:1938..2040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13843 1939..2040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13843.6083.1prot_M-pyrifera_M_contig13843.6083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13843 1399..2040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13843.6083.1

>prot_M-pyrifera_M_contig13843.6083.1 ID=prot_M-pyrifera_M_contig13843.6083.1|Name=mRNA_M-pyrifera_M_contig13843.6083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MCNTFVLSLAQDGCCLAFSVGFPLLGNRHRKHVYRSFSLAAQILESIESP
LAKLRAQLHLEVARCEMDSDFLAKTSSHMGKAIRQDYGGEPIPPP
back to top

mRNA from alignment at M-pyrifera_M_contig13843:1399..2040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13843.6083.1 ID=mRNA_M-pyrifera_M_contig13843.6083.1|Name=mRNA_M-pyrifera_M_contig13843.6083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig13843:1399..2040+ (Macrocystis pyrifera P11B4 male)
ATGTGTAACACTTTTGTATTGTCACTCGCGCAGGACGGGTGTTGCCTCGC GTTCTCCGTCGGGTTCCCCTTGCTCGGAAACAGGCACCGGAAGCACGTAT ACAGGAGCTTCTCCTTGGCAGCTCAGATTCTGGAATCGATCGAGTCGCCA CTCGCGAAGCTGCGCGCCCAGCTCCACTTGGAGGTGAACGTTTCCCGCGT GGCTCGTTGATTTGCTTTTTTGCAAATACCCGAGAAGAACGGCCACCGAT TGTGGTTTGATATACGTTTGCTCTACACTTGACCGCGCGGGCTATGTGCG TTCAATTTCAGGGTGGCGCATTTTCATCTTTGCCGTCTTGGCCCTCGTCG AATACGTAGCAGTGCCTCGTTACCCTCGAAAACCCTCGTCGCTGAATCCA GCAAACACCTCGTGTATTCGAATTTAGTCACATACCTAGTATATATCTGT GCACGGTGGGAAAATCAGCAGCCCGTTCACCTAACGTTCTACGGTGCATA CCGTATCCGCTTCGTTCCCCCACGTGTGATTGCCGATCAGGTGGCGAGGT GCGAGATGGACTCTGACTTTCTCGCGAAGACGTCCTCCCACATGGGAAAG GCAATACGGCAGGACTACGGAGGTGAGCCAATTCCACCCCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13843:1399..2040+

>mRNA_M-pyrifera_M_contig13843.6083.1 ID=mRNA_M-pyrifera_M_contig13843.6083.1|Name=mRNA_M-pyrifera_M_contig13843.6083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig13843:1399..2040+ (Macrocystis pyrifera P11B4 male)
ATGTGTAACACTTTTGTATTGTCACTCGCGCAGGACGGGTGTTGCCTCGC
GTTCTCCGTCGGGTTCCCCTTGCTCGGAAACAGGCACCGGAAGCACGTAT
ACAGGAGCTTCTCCTTGGCAGCTCAGATTCTGGAATCGATCGAGTCGCCA
CTCGCGAAGCTGCGCGCCCAGCTCCACTTGGAGATGTGTAACACTTTTGT
ATTGTCACTCGCGCAGGACGGGTGTTGCCTCGCGTTCTCCGTCGGGTTCC
CCTTGCTCGGAAACAGGCACCGGAAGCACGTATACAGGAGCTTCTCCTTG
GCAGCTCAGATTCTGGAATCGATCGAGTCGCCACTCGCGAAGCTGCGCGC
CCAGCTCCACTTGGAGGTGGCGAGGTGCGAGATGGACTCTGACTTTCTCG
CGAAGACGTCCTCCCACATGGGAAAGGCAATACGGCAGGACTACGGAGGT
GAGCCAATTCCACCCCCGGTGGCGAGGTGCGAGATGGACTCTGACTTTCT
CGCGAAGACGTCCTCCCACATGGGAAAGGCAATACGGCAGGACTACGGAG
GTGAGCCAATTCCACCCCCG
back to top