mRNA_M-pyrifera_M_contig13765.6065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13765.6065.1
Unique NamemRNA_M-pyrifera_M_contig13765.6065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A6H5KTI6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTI6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.560e-42
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLFR 312
            +AVGDG+ADLVGRQ+G+HKW++GG KSVEGS AF S SF+AS+AMI WF  FG+L+V+P EAA R AA+S A AAVEL PPRL GDDN+SVPV AL LGR LFR
Sbjct:  266 MAVGDGMADLVGRQLGKHKWRKGGEKSVEGSAAFVSGSFLASVAMIQWFRHFGLLSVTPTEAAARAAAISFASAAVELFPPRLVGDDNISVPVTALVLGRLLFR 369          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A7S0XGC8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XGC8_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 2.570e-18
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGR-HKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLFR 312
            L  GDGL+D+VGR++G  +K     +KSV GS A    +F  SM + + FH  G L +S + AA R+A+V+AAC  VE LP     DDN+ VPVAAL LGR LF+
Sbjct:   54 LCGGDGLSDIVGRRLGAGNKLWFNKNKSVAGSAAMFLGAFGFSMGLTSAFHSLGYLQLSASSAAVRLASVAAACTVVEALPITARVDDNILVPVAALLLGRMLFK 158          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: C1MRG0_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRG0_MICPC)

HSP 1 Score: 85.5 bits (210), Expect = 4.160e-18
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 GDGLADLVGRQIGR-HKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLF 309
            GDGLAD+VGR++G+ +       KS  GS A     F  S+A+ A+FH  G ++V P  AAGR+A ++AAC A+E LP     DDN+SVPV A+ LG  LF
Sbjct:  148 GDGLADIVGRRLGKGNPLPFNADKSYAGSAAMFLGGFGLSLALCAFFHALGYMSVDPGSAAGRLALIAAACTAIEALPAGSFLDDNISVPVVAVVLGGVLF 248          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A7R9UWT7_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UWT7_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 2.400e-17
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIG-RHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALAL 294
            +AVGDG+AD+VGR++G  ++W    SKSV GSVAF + +  AS+ ++AW   +GVLA    +   R+  +S ACAAVELLP  +  DDN+SVP+    L
Sbjct:   31 MAVGDGVADIVGRRLGGSNRWPFNPSKSVAGSVAFVAGATGASIGLLAWLGAWGVLAPLAPDTPLRLLLISVACAAVELLPTDVL-DDNVSVPLVGAGL 128          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A7S0Q8J0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q8J0_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 8.180e-17
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLFR 312
            +AVGDGLAD+ GRQ G  KW    +KS  GS AFA S+F+AS+  +A FH  G  A++ A +   +A +S   AA EL+P     DDN+ VP+ A  L   L  
Sbjct:   15 MAVGDGLADIFGRQYGTSKWPFAPTKSYVGSFAFALSAFLASLGFVALFHACGYTALTAAASVPALALISLLSAAAELMP---GVDDNIVVPLTATGLAALLLH 115          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A8J6C688_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C688_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 5.180e-16
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIG-RHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALAL 294
            +AVGDG+AD+VGR++G  ++W    SKSV GSVAF + +  AS+ ++AW   +GVLA    +   R+  +S ACAAVELLP  +  DDN+SVP+    L
Sbjct:  202 MAVGDGVADIVGRRLGGSNRWPFNPSKSVAGSVAFVAGATGASIGLLAWLGAWGVLAPLAPDTPLRLLLISVACAAVELLPTDVL-DDNVSVPLVGAGL 299          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A835HDS4_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HDS4_9MAGN)

HSP 1 Score: 72.8 bits (177), Expect = 5.920e-13
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLF 309
            L  GDG+AD+VGR++GR+K     +KS+EGS+A A++ F+AS+  + +F  FG++  S     G +  VS A A VE LP     DDNL+VP+ +L +G  +F
Sbjct:  228 LCAGDGVADIVGRRLGRNKLPYNRNKSLEGSIAMATAGFIASVGYMHYFSLFGLVHESWEMLFGFLI-VSLASAVVESLPISTDLDDNLTVPLTSLLVGSLIF 329          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: UPI000C1D27E9 (probable phytol kinase 3, chloroplastic isoform X1 n=4 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D27E9)

HSP 1 Score: 72.4 bits (176), Expect = 7.290e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLF 309
            L  GDG+AD+VGR+ G HK     +KS+ GS+A A++ F+A +  + +F  FG +  SP    G +  VS A + VE  P     DDNL+VP+A++ +G ++F
Sbjct:  211 LCAGDGIADIVGRRFGSHKLPYNRNKSIVGSIAMATAGFLACIGYMHYFSSFGYVQESPKMVLGFLV-VSLAASLVESHPLSTELDDNLTVPLASVLVGSFVF 312          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: A0A5P1FFD9_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FFD9_ASPOF)

HSP 1 Score: 72.0 bits (175), Expect = 8.890e-13
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLF 309
            L  GDGLAD+VGR++G++       KS+EGSVA A++ F+AS+  + +F  FG +  S   +  R   VS A A VE LP     DDNL+VP+ +L +G ++F
Sbjct:  195 LCAGDGLADIVGRRLGKNMLPYNIDKSIEGSVAMATAGFIASILYMHYFSTFGYIEESWGMSI-RFLLVSIAAAFVESLPISSELDDNLTVPLTSLLVGAFIF 296          
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Match: UPI0010A432DB (probable phytol kinase 3, chloroplastic n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A432DB)

HSP 1 Score: 71.2 bits (173), Expect = 1.870e-12
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFHRFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGRWLF 309
            L  GDG+AD+VGR+ G  K    G+KS+ GS+A ASS F+AS+  + +F  FG +  S     G +  VS A   VE LP     DDNL+VP+ ++ +G  +F
Sbjct:  207 LCAGDGMADIVGRRFGSKKIPYNGNKSLAGSIAMASSGFLASIGYMYYFSSFGYIEQSWRMILGFLI-VSIATTVVESLPISSEIDDNLTVPLTSILVGSMIF 308          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13765.6065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI6_9PHAE1.560e-4271.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0XGC8_9CHLO2.570e-1848.57Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
C1MRG0_MICPC4.160e-1847.52Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7R9UWT7_DIALT2.400e-1747.47Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S0Q8J0_9EUKA8.180e-1744.23Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J6C688_DIALT5.180e-1647.47Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A835HDS4_9MAGN5.920e-1342.72Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
UPI000C1D27E97.290e-1339.81probable phytol kinase 3, chloroplastic isoform X1... [more]
A0A5P1FFD9_ASPOF8.890e-1342.72Uncharacterized protein n=1 Tax=Asparagus officina... [more]
UPI0010A432DB1.870e-1241.75probable phytol kinase 3, chloroplastic n=1 Tax=Pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13765contigM-pyrifera_M_contig13765:344..658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.3e-34
Seed eggNOG ortholog2880.D7G296
Preferred nameVTE5
KEGG rclassRC00002,RC00017
KEGG koko:K15892,ko:K18678
KEGG ReactionR09849,R10659
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0010276,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
Ec32 ortholog descriptionProbable phytol kinase, chloroplast precursor, carboxyterminal half
Ec32 orthologEc-16_001970.1
EC2.7.1.182,2.7.1.216
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.8705568-CDS-M-pyrifera_M_contig13765:343..6581622815825.8705568-CDS-M-pyrifera_M_contig13765:343..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13765 344..658 +
1692277591.1590023-CDS-M-pyrifera_M_contig13765:343..6581692277591.1590023-CDS-M-pyrifera_M_contig13765:343..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13765 344..658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13765.6065.1prot_M-pyrifera_M_contig13765.6065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13765 344..658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13765.6065.1

>prot_M-pyrifera_M_contig13765.6065.1 ID=prot_M-pyrifera_M_contig13765.6065.1|Name=mRNA_M-pyrifera_M_contig13765.6065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
LAVGDGLADLVGRQIGRHKWQEGGSKSVEGSVAFASSSFMASMAMIAWFH
RFGVLAVSPAEAAGRVAAVSAACAAVELLPPRLAGDDNLSVPVAALALGR
WLFR*
back to top

mRNA from alignment at M-pyrifera_M_contig13765:344..658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13765.6065.1 ID=mRNA_M-pyrifera_M_contig13765.6065.1|Name=mRNA_M-pyrifera_M_contig13765.6065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig13765:344..658+ (Macrocystis pyrifera P11B4 male)
CTGGCCGTGGGAGACGGCCTCGCGGACCTGGTGGGTCGACAGATCGGTCG GCACAAGTGGCAAGAGGGGGGCAGCAAAAGCGTAGAGGGAAGCGTGGCAT TCGCATCATCCTCTTTCATGGCCTCCATGGCCATGATCGCCTGGTTCCAC CGCTTCGGGGTGCTGGCGGTGTCGCCGGCCGAGGCGGCGGGGAGGGTCGC CGCCGTGTCAGCCGCCTGCGCGGCTGTGGAACTCCTCCCGCCTCGGTTGG CAGGGGACGACAACTTAAGCGTCCCCGTTGCCGCCCTCGCGCTAGGGAGG TGGCTGTTCCGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13765:344..658+

>mRNA_M-pyrifera_M_contig13765.6065.1 ID=mRNA_M-pyrifera_M_contig13765.6065.1|Name=mRNA_M-pyrifera_M_contig13765.6065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig13765:344..658+ (Macrocystis pyrifera P11B4 male)
CTGGCCGTGGGAGACGGCCTCGCGGACCTGGTGGGTCGACAGATCGGTCG
GCACAAGTGGCAAGAGGGGGGCAGCAAAAGCGTAGAGGGAAGCGTGGCAT
TCGCATCATCCTCTTTCATGGCCTCCATGGCCATGATCGCCTGGTTCCAC
CGCTTCGGGGTGCTGGCGGTGTCGCCGGCCGAGGCGGCGGGGAGGGTCGC
CGCCGTGTCAGCCGCCTGCGCGGCTGTGGAACTCCTCCCGCCTCGGTTGG
CAGGGGACGACAACTTAAGCGTCCCCGTTGCCGCCCTCGCGCTAGGGAGG
TGGCTGTTCCGGTAGCTGGCCGTGGGAGACGGCCTCGCGGACCTGGTGGG
TCGACAGATCGGTCGGCACAAGTGGCAAGAGGGGGGCAGCAAAAGCGTAG
AGGGAAGCGTGGCATTCGCATCATCCTCTTTCATGGCCTCCATGGCCATG
ATCGCCTGGTTCCACCGCTTCGGGGTGCTGGCGGTGTCGCCGGCCGAGGC
GGCGGGGAGGGTCGCCGCCGTGTCAGCCGCCTGCGCGGCTGTGGAACTCC
TCCCGCCTCGGTTGGCAGGGGACGACAACTTAAGCGTCCCCGTTGCCGCC
CTCGCGCTAGGGAGGTGGCTGTTCCGGTAG
back to top