mRNA_M-pyrifera_M_contig13762.6064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13762.6064.1
Unique NamemRNA_M-pyrifera_M_contig13762.6064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.080e-20
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVD 156
            +L+P+WRW+EK  A+EEAKL HGL PDLPDFYN M+ERPKED+RG+GLL+V+
Sbjct:  975 DLYPSWRWNEKLSAIEEAKLKHGLKPDLPDFYNFMMERPKEDARGFGLLHVE 1026          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.750e-20
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVD 156
            +L+P+WRW+EK  A+EEAKL HGL PDLPDFYN ++ERPKED+RG+GLL+V+
Sbjct:  942 DLYPSWRWNEKLSAIEEAKLKHGLKPDLPDFYNFIMERPKEDARGFGLLHVE 993          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: B8C2Z7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2Z7_THAPS)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            E++PAWRW EK DA+E  +   GL P+LPDFYN+ +ERPK+D RGYGLL+VD S
Sbjct:  924 EVYPAWRWCEKLDAIELTQKQLGLRPNLPDFYNMAMERPKKDPRGYGLLFVDAS 977          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A4D9CUJ3_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUJ3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.310e-16
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            EL+PAWRW EK DA+E+A     L P LPDFYNI+LERP+ D+ GYGL +VD S
Sbjct:  787 ELYPAWRWCEKQDAIEDALQALNLKPALPDFYNILLERPRGDANGYGLAFVDAS 840          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A836CJD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.320e-16
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVD 156
            EL+PAWRW E+ +AVE+A+  H L P LPDFYNI+LERP+ D+RGY  L+V+
Sbjct:  539 ELYPAWRWCERMEAVEDARRRHNLRPTLPDFYNIVLERPRRDARGYAALFVE 590          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A7S3GXA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXA6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.600e-16
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            EL+P +RW E+ D VE+A+ T  L P LPDF+NI+LERP++D  GYGLLYVD S
Sbjct:   22 ELYPPYRWCERLDVVEQAQETFELKPTLPDFWNILLERPRQDPNGYGLLYVDAS 75          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A7S4DIC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIC4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 5.770e-16
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            EL+P+WRW E+ DA+ EA+   G+   LPDFYNI+LERP+ D+RGYGLLYV+ +
Sbjct:   43 ELYPSWRWCERQDAIAEAEKALGVGGGLPDFYNILLERPRADARGYGLLYVEAN 96          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A7S4KCG3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCG3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.900e-16
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            E++P WRW EK DA+E+ +   GL P+LPDFYN+ LERP+ D RG+GLL+VD S
Sbjct:  330 EVYPPWRWGEKLDAIEQTQKRLGLRPNLPDFYNMSLERPRRDPRGFGLLFVDAS 383          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A7S2KB67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB67_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            E+FPAWRW EK DA+E  +   GL P+LPDFYN+ +ERP +D RGY LL+VD S
Sbjct:  134 EVFPAWRWCEKLDAIEYVQKELGLRPNLPDFYNMAMERPMKDPRGYSLLFVDAS 187          
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Match: A0A7S1B894_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B894_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLYVDVS 162
            E++PAWRW EK DA+E+ +   GL P L DFYN+ LERP +D RGYG+L+VD S
Sbjct:  654 EIYPAWRWVEKLDAIEQTQKMVGLKPALADFYNMTLERPMDDPRGYGILFVDAS 707          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13762.6064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP6_ECTSI1.080e-2071.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGP4_9PHAE3.750e-2069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8C2Z7_THAPS1.240e-1662.96Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A4D9CUJ3_9STRA4.310e-1662.96SET domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A836CJD9_9STRA4.320e-1661.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GXA6_9STRA5.600e-1661.11Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4DIC4_HETAK5.770e-1659.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4KCG3_9STRA5.900e-1659.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2KB67_9STRA1.500e-1561.11Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S1B894_9STRA2.800e-1559.26Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13762contigM-pyrifera_M_contig13762:2736..2897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D8LRP6
KEGG koko:K03231,ko:K22156
KEGG Pathwayko03013,ko05134,map03013,map05134
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759
Ec32 ortholog descriptionSET and Chromo-like domain protein
Ec32 orthologEc-12_000580.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03016,ko03019,ko03036,ko04131,ko04147
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.8283226-CDS-M-pyrifera_M_contig13762:2735..28971622815825.8283226-CDS-M-pyrifera_M_contig13762:2735..2897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13762 2736..2897 -
1692277591.145039-CDS-M-pyrifera_M_contig13762:2735..28971692277591.145039-CDS-M-pyrifera_M_contig13762:2735..2897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13762 2736..2897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13762.6064.1prot_M-pyrifera_M_contig13762.6064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13762 2736..2897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13762.6064.1

>prot_M-pyrifera_M_contig13762.6064.1 ID=prot_M-pyrifera_M_contig13762.6064.1|Name=mRNA_M-pyrifera_M_contig13762.6064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
ELFPAWRWSEKTDAVEEAKLTHGLSPDLPDFYNIMLERPKEDSRGYGLLY
VDVS
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mRNA from alignment at M-pyrifera_M_contig13762:2736..2897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13762.6064.1 ID=mRNA_M-pyrifera_M_contig13762.6064.1|Name=mRNA_M-pyrifera_M_contig13762.6064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig13762:2736..2897- (Macrocystis pyrifera P11B4 male)
GAACTGTTCCCGGCGTGGCGGTGGAGCGAGAAAACAGACGCTGTGGAGGA GGCTAAGCTTACCCACGGCTTGAGTCCGGACCTCCCGGACTTCTACAACA TAATGTTGGAGAGGCCGAAGGAGGACAGCAGGGGCTACGGCCTGTTGTAT GTCGACGTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13762:2736..2897-

>mRNA_M-pyrifera_M_contig13762.6064.1 ID=mRNA_M-pyrifera_M_contig13762.6064.1|Name=mRNA_M-pyrifera_M_contig13762.6064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig13762:2736..2897- (Macrocystis pyrifera P11B4 male)
GAACTGTTCCCGGCGTGGCGGTGGAGCGAGAAAACAGACGCTGTGGAGGA
GGCTAAGCTTACCCACGGCTTGAGTCCGGACCTCCCGGACTTCTACAACA
TAATGTTGGAGAGGCCGAAGGAGGACAGCAGGGGCTACGGCCTGTTGTAT
GTCGACGTGAGTGAACTGTTCCCGGCGTGGCGGTGGAGCGAGAAAACAGA
CGCTGTGGAGGAGGCTAAGCTTACCCACGGCTTGAGTCCGGACCTCCCGG
ACTTCTACAACATAATGTTGGAGAGGCCGAAGGAGGACAGCAGGGGCTAC
GGCCTGTTGTATGTCGACGTGAGT
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