mRNA_M-pyrifera_M_contig13718.6040.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: D8LE04_ECTSI (Tubulin delta chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE04_ECTSI) HSP 1 Score: 226 bits (575), Expect = 5.580e-68 Identity = 126/210 (60.00%), Postives = 134/210 (63.81%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDVARAVIIDTEPKVIQQIIAGCGRGXXXXXX--RGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGA-WRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MSVVT+QVGQCGNQLGASLF ALH HA P + CR+SFFRDG VARAVIIDTEPKVIQ+I+A GR R A G GGGSRG WRYD GTQVCCHAQGGAANNWAYGY+ HGA F+EACLEGVRRETERCDRL GLC+LHSLAGGTGSGLGT LTE
Sbjct: 37 MSVVTVQVGQCGNQLGASLFQALHDHASQPPAHHGHTSGTESERARSA---------CRQSFFRDGGVARAVIIDTEPKVIQRIVATRGRAEESTGAGARRAAGGRESAYGKTAQRRTNTTGDRNHSTVGGGSRGGGWRYDSGTQVCCHAQGGAANNWAYGYHAHGATFSEACLEGVRRETERCDRLTGLCILHSLAGGTGSGLGTCLTE 237
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A672H5L1_SALFA (Tubulin delta chain n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H5L1_SALFA) HSP 1 Score: 113 bits (283), Expect = 5.730e-26 Identity = 80/211 (37.91%), Postives = 96/211 (45.50%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRD---GD-VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MSVVT+Q+GQCGNQ+G LFD L A P + CR FFR G+ VARAV+ID EPKVI Q +A +G G WRY + + G+ NNWA GY HG E E VR+E ERCDRLAGL + S+AGGTGSGLGTY+T+
Sbjct: 1 MSVVTVQLGQCGNQVGQELFDVLSSDAQPGPRRAAYPAA------------------CRERFFRHTAHGELVARAVLIDMEPKVINQSVAKAAKG-----------------------------------------GRWRYGDSAHFS--QKQGSGNNWANGYCVHGPRHGEVVEELVRQEVERCDRLAGLMPMMSVAGGTGSGLGTYVTQ 150
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A485LB49_9STRA (Tubulin delta chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB49_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.720e-25 Identity = 78/221 (35.29%), Postives = 97/221 (43.89%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALH---QHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDV----------ARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTEV 624
MSVVT+Q+GQCGNQ+G SLFD L +H P + FFR D ARAV+ID EPKV+ Q + D GG AW+YD VC QGG+ NNWAYGY HG A A+A + VR+E E+CD G L SLAGGTGSGLG+++ ++
Sbjct: 1 MSVVTLQLGQCGNQVGLSLFDKLAAELKHFSPED---------------------------KECFFRAHDAKNIGSHPKTTARAVLIDMEPKVVNQCL----------------------------------------DKAGGKSQAWQYDGANVVC--EQGGSGNNWAYGYAVHGNASADAVTDVVRKEVEQCDYFKGFLALQSLAGGTGSGLGSFVCDI 152
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: W4GTD2_9STRA (Tubulin delta chain n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTD2_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.030e-24 Identity = 79/221 (35.75%), Postives = 94/221 (42.53%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDAL-HQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDV-------------ARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MSVVT+Q+GQCGNQLG S FD L H+ H R FFR D ARAV+ID EPKV+ Q + GR W+YD+ VC Q G+ NNWAYGY HGAA EA L+ VR+E ERCD G L SLAGGTGSGLG+++ +
Sbjct: 1 MSVVTLQLGQCGNQLGLSFFDKLAHELEHFSAED-------------------------RECFFRSHDAKTIASHESNGAATARAVLIDMEPKVVNQCVGNAGRTSSGLP--------------------------------------WQYDDANVVC--EQSGSGNNWAYGYAVHGAACHEAVLDVVRKEVERCDYFKGFLALQSLAGGTGSGLGSFVCD 156
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A7K8YIS9_9PASS (Tubulin delta chain (Fragment) n=2 Tax=Thamnophilidae TaxID=81887 RepID=A0A7K8YIS9_9PASS) HSP 1 Score: 108 bits (271), Expect = 2.890e-24 Identity = 73/214 (34.11%), Postives = 97/214 (45.33%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRD----GDVARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTEVSG 630
MS+VT+Q+GQCGNQ+G +F L + H P CR FF + G VARAV++D EPKVI Q ++ R G+WRY++ + C + G+ NNWA GY HG EA ++ V+RE ERCDRL G L S+AGGTGSGLG ++T+ G
Sbjct: 1 MSIVTVQLGQCGNQVGHQVFSCLCRDLHGPHGDSRDSQSYQEA--------------CRERFFWEQQSGGLVARAVLVDMEPKVISQTLSMAARA-----------------------------------------GSWRYNDHSHFC--QRQGSGNNWANGYSVHGPRHKEAIMDLVQREAERCDRLGGFLTLMSMAGGTGSGLGAFVTQCLG 157
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: UPI001916CF55 (tubulin delta chain isoform X4 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=UPI001916CF55) HSP 1 Score: 105 bits (262), Expect = 5.130e-24 Identity = 67/211 (31.75%), Postives = 95/211 (45.02%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MS+VT+Q+GQCGNQ+G +FD L + +H C+ FFR+ + VARAV+ID EPKVI Q + S G W+Y + T C + G+ NNWAYGY HG E+ + ++ E E+CD L+G ++ S+AGGTGSGLG ++T+
Sbjct: 1 MSIVTVQLGQCGNQIGFEVFDTLFRDSH------------CSQGLCSKRENEAYQASCKERFFREEENGVPVARAVLIDMEPKVINQTL-----------------------------------------SKAAQSGRWKYGQHTSFC--QKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFITQ 156
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A1S3EYY9_DIPOR (Tubulin delta chain n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EYY9_DIPOR) HSP 1 Score: 108 bits (269), Expect = 5.750e-24 Identity = 67/211 (31.75%), Postives = 98/211 (46.45%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MS+VT+Q+GQCGNQ+G +FD L +H + C+ FFR+ + +ARAV++D EPKVI Q +A + G W+Y G C + + G+ NNWAYGY HG E+ ++ +++E E+CD L+G V+ S+AGGTGSGLG +LT+
Sbjct: 1 MSIVTVQLGQCGNQIGFEVFDTLFSDSHCSQA------------LCSKRENETYQASCKERFFREEENGVPIARAVLVDMEPKVINQTLAKAAQS-----------------------------------------GQWKY--GQHSCFYQKQGSGNNWAYGYSVHGPRHRESIMDLIQKEVEKCDSLSGFFVIMSMAGGTGSGLGAFLTQ 156
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A8B8UIR3_CAMFR (Tubulin delta chain n=2 Tax=Camelus TaxID=9836 RepID=A0A8B8UIR3_CAMFR) HSP 1 Score: 107 bits (266), Expect = 6.540e-24 Identity = 67/211 (31.75%), Postives = 97/211 (45.97%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MS+VT+Q+GQCGNQ+G +FDAL +H P C+ FF + + VARAV++D EPKVI Q + S G W+Y + + +C + G+ NNWAYGY HG E+ + +++E E+CD L+G ++ S+AGGTGSGLG +LT+
Sbjct: 1 MSIVTVQLGQCGNQIGFEVFDALFSDSHCPQK------------FCSKRENEAYQASCKERFFSEEEDGVPVARAVLVDMEPKVINQTL-----------------------------------------SRAAHSGRWKYGQHSHLC--QKQGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIVMSMAGGTGSGLGAFLTQ 156
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A6P7EM89_SHEEP (Tubulin delta chain n=2 Tax=Caprinae TaxID=9963 RepID=A0A6P7EM89_SHEEP) HSP 1 Score: 107 bits (266), Expect = 7.430e-24 Identity = 67/211 (31.75%), Postives = 96/211 (45.50%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MS+VT+Q+GQCGNQ+G +FDAL +H P C+ FF + + +ARAV++D EPKVI Q ++ R G W+Y G C + G+ NNWAYGY HG E+ + +R+E E+CD L+G ++ S+AGGTGSGLG ++T+
Sbjct: 22 MSIVTVQLGQCGNQIGFEVFDALFNDSHCPRG------------LCSKKENEAYQASCKERFFSEEENGVLLARAVLVDMEPKVINQTLSKAARS-----------------------------------------GRWKY--GQHSCFCQKQGSGNNWAYGYSVHGPRHEESIMNLIRKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQ 177
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: W5U812_ICTPU (Tubulin delta chain n=5 Tax=Siluroidei TaxID=1489793 RepID=W5U812_ICTPU) HSP 1 Score: 107 bits (266), Expect = 1.380e-23 Identity = 75/210 (35.71%), Postives = 96/210 (45.71%), Query Frame = 1
Query: 1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD---VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
MSVVT+Q+GQCGNQ+G +F +++ + +K R F + D VARAV+ID EPKVI Q IA S G WRY E + C + G+ NNWA GY HG EA + VRRE ERCDRLAG+ + S+AGGTGSG+GTY+T+
Sbjct: 1 MSVVTVQLGQCGNQIGPEVFSTVYEDSTGANAKPYKQCSD------------------ERLFRENSDGALVARAVLIDMEPKVITQAIAKAS-----------------------------------------SSGKWRYGEKSHFC--QKQGSGNNWANGYCVHGPQHKEAVEDLVRREVERCDRLAGIFAMMSVAGGTGSGVGTYVTQ 149 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13718.6040.1 >prot_M-pyrifera_M_contig13718.6040.1 ID=prot_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKTTTTTTTTTAEAGNAAEback to top mRNA from alignment at M-pyrifera_M_contig13718:462..1211- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13718.6040.1 ID=mRNA_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig13718:462..1211- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13718:462..1211- >mRNA_M-pyrifera_M_contig13718.6040.1 ID=mRNA_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig13718:462..1211- (Macrocystis pyrifera P11B4 male)back to top |