mRNA_M-pyrifera_M_contig13718.6040.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13718.6040.1
Unique NamemRNA_M-pyrifera_M_contig13718.6040.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: D8LE04_ECTSI (Tubulin delta chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE04_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 5.580e-68
Identity = 126/210 (60.00%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDVARAVIIDTEPKVIQQIIAGCGRGXXXXXX--RGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGA-WRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MSVVT+QVGQCGNQLGASLF ALH HA  P +                         CR+SFFRDG VARAVIIDTEPKVIQ+I+A  GR         R A G                         GGGSRG  WRYD GTQVCCHAQGGAANNWAYGY+ HGA F+EACLEGVRRETERCDRL GLC+LHSLAGGTGSGLGT LTE
Sbjct:   37 MSVVTVQVGQCGNQLGASLFQALHDHASQPPAHHGHTSGTESERARSA---------CRQSFFRDGGVARAVIIDTEPKVIQRIVATRGRAEESTGAGARRAAGGRESAYGKTAQRRTNTTGDRNHSTVGGGSRGGGWRYDSGTQVCCHAQGGAANNWAYGYHAHGATFSEACLEGVRRETERCDRLTGLCILHSLAGGTGSGLGTCLTE 237          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A672H5L1_SALFA (Tubulin delta chain n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H5L1_SALFA)

HSP 1 Score: 113 bits (283), Expect = 5.730e-26
Identity = 80/211 (37.91%), Postives = 96/211 (45.50%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRD---GD-VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MSVVT+Q+GQCGNQ+G  LFD L   A P   +                        CR  FFR    G+ VARAV+ID EPKVI Q +A   +G                                         G WRY +        + G+ NNWA GY  HG    E   E VR+E ERCDRLAGL  + S+AGGTGSGLGTY+T+
Sbjct:    1 MSVVTVQLGQCGNQVGQELFDVLSSDAQPGPRRAAYPAA------------------CRERFFRHTAHGELVARAVLIDMEPKVINQSVAKAAKG-----------------------------------------GRWRYGDSAHFS--QKQGSGNNWANGYCVHGPRHGEVVEELVRQEVERCDRLAGLMPMMSVAGGTGSGLGTYVTQ 150          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A485LB49_9STRA (Tubulin delta chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB49_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.720e-25
Identity = 78/221 (35.29%), Postives = 97/221 (43.89%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALH---QHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDV----------ARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTEV 624
            MSVVT+Q+GQCGNQ+G SLFD L    +H  P                             +  FFR  D           ARAV+ID EPKV+ Q +                                        D  GG   AW+YD    VC   QGG+ NNWAYGY  HG A A+A  + VR+E E+CD   G   L SLAGGTGSGLG+++ ++
Sbjct:    1 MSVVTLQLGQCGNQVGLSLFDKLAAELKHFSPED---------------------------KECFFRAHDAKNIGSHPKTTARAVLIDMEPKVVNQCL----------------------------------------DKAGGKSQAWQYDGANVVC--EQGGSGNNWAYGYAVHGNASADAVTDVVRKEVEQCDYFKGFLALQSLAGGTGSGLGSFVCDI 152          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: W4GTD2_9STRA (Tubulin delta chain n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTD2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.030e-24
Identity = 79/221 (35.75%), Postives = 94/221 (42.53%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDAL-HQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGDV-------------ARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MSVVT+Q+GQCGNQLG S FD L H+  H                              R  FFR  D              ARAV+ID EPKV+ Q +   GR                                            W+YD+   VC   Q G+ NNWAYGY  HGAA  EA L+ VR+E ERCD   G   L SLAGGTGSGLG+++ +
Sbjct:    1 MSVVTLQLGQCGNQLGLSFFDKLAHELEHFSAED-------------------------RECFFRSHDAKTIASHESNGAATARAVLIDMEPKVVNQCVGNAGRTSSGLP--------------------------------------WQYDDANVVC--EQSGSGNNWAYGYAVHGAACHEAVLDVVRKEVERCDYFKGFLALQSLAGGTGSGLGSFVCD 156          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A7K8YIS9_9PASS (Tubulin delta chain (Fragment) n=2 Tax=Thamnophilidae TaxID=81887 RepID=A0A7K8YIS9_9PASS)

HSP 1 Score: 108 bits (271), Expect = 2.890e-24
Identity = 73/214 (34.11%), Postives = 97/214 (45.33%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRD----GDVARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTEVSG 630
            MS+VT+Q+GQCGNQ+G  +F  L +  H P                           CR  FF +    G VARAV++D EPKVI Q ++   R                                          G+WRY++ +  C   + G+ NNWA GY  HG    EA ++ V+RE ERCDRL G   L S+AGGTGSGLG ++T+  G
Sbjct:    1 MSIVTVQLGQCGNQVGHQVFSCLCRDLHGPHGDSRDSQSYQEA--------------CRERFFWEQQSGGLVARAVLVDMEPKVISQTLSMAARA-----------------------------------------GSWRYNDHSHFC--QRQGSGNNWANGYSVHGPRHKEAIMDLVQREAERCDRLGGFLTLMSMAGGTGSGLGAFVTQCLG 157          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: UPI001916CF55 (tubulin delta chain isoform X4 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=UPI001916CF55)

HSP 1 Score: 105 bits (262), Expect = 5.130e-24
Identity = 67/211 (31.75%), Postives = 95/211 (45.02%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MS+VT+Q+GQCGNQ+G  +FD L + +H                             C+  FFR+ +    VARAV+ID EPKVI Q +                                         S     G W+Y + T  C   + G+ NNWAYGY  HG    E+ +  ++ E E+CD L+G  ++ S+AGGTGSGLG ++T+
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDTLFRDSH------------CSQGLCSKRENEAYQASCKERFFREEENGVPVARAVLIDMEPKVINQTL-----------------------------------------SKAAQSGRWKYGQHTSFC--QKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFITQ 156          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A1S3EYY9_DIPOR (Tubulin delta chain n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EYY9_DIPOR)

HSP 1 Score: 108 bits (269), Expect = 5.750e-24
Identity = 67/211 (31.75%), Postives = 98/211 (46.45%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MS+VT+Q+GQCGNQ+G  +FD L   +H   +                         C+  FFR+ +    +ARAV++D EPKVI Q +A   +                                          G W+Y  G   C + + G+ NNWAYGY  HG    E+ ++ +++E E+CD L+G  V+ S+AGGTGSGLG +LT+
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDTLFSDSHCSQA------------LCSKRENETYQASCKERFFREEENGVPIARAVLVDMEPKVINQTLAKAAQS-----------------------------------------GQWKY--GQHSCFYQKQGSGNNWAYGYSVHGPRHRESIMDLIQKEVEKCDSLSGFFVIMSMAGGTGSGLGAFLTQ 156          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A8B8UIR3_CAMFR (Tubulin delta chain n=2 Tax=Camelus TaxID=9836 RepID=A0A8B8UIR3_CAMFR)

HSP 1 Score: 107 bits (266), Expect = 6.540e-24
Identity = 67/211 (31.75%), Postives = 97/211 (45.97%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MS+VT+Q+GQCGNQ+G  +FDAL   +H P                           C+  FF + +    VARAV++D EPKVI Q +                                         S     G W+Y + + +C   + G+ NNWAYGY  HG    E+ +  +++E E+CD L+G  ++ S+AGGTGSGLG +LT+
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALFSDSHCPQK------------FCSKRENEAYQASCKERFFSEEEDGVPVARAVLVDMEPKVINQTL-----------------------------------------SRAAHSGRWKYGQHSHLC--QKQGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIVMSMAGGTGSGLGAFLTQ 156          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: A0A6P7EM89_SHEEP (Tubulin delta chain n=2 Tax=Caprinae TaxID=9963 RepID=A0A6P7EM89_SHEEP)

HSP 1 Score: 107 bits (266), Expect = 7.430e-24
Identity = 67/211 (31.75%), Postives = 96/211 (45.50%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD----VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MS+VT+Q+GQCGNQ+G  +FDAL   +H P                           C+  FF + +    +ARAV++D EPKVI Q ++   R                                          G W+Y  G   C   + G+ NNWAYGY  HG    E+ +  +R+E E+CD L+G  ++ S+AGGTGSGLG ++T+
Sbjct:   22 MSIVTVQLGQCGNQIGFEVFDALFNDSHCPRG------------LCSKKENEAYQASCKERFFSEEENGVLLARAVLVDMEPKVINQTLSKAARS-----------------------------------------GRWKY--GQHSCFCQKQGSGNNWAYGYSVHGPRHEESIMNLIRKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQ 177          
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Match: W5U812_ICTPU (Tubulin delta chain n=5 Tax=Siluroidei TaxID=1489793 RepID=W5U812_ICTPU)

HSP 1 Score: 107 bits (266), Expect = 1.380e-23
Identity = 75/210 (35.71%), Postives = 96/210 (45.71%), Query Frame = 1
Query:    1 MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKXXXXXXXXXXXXXXXXXXXXXXXXCRRSFFRDGD---VARAVIIDTEPKVIQQIIAGCGRGXXXXXXRGAGGAXXXXXXXXXXXXXXXXXXXXXXDSGGGSRGAWRYDEGTQVCCHAQGGAANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSGLGTYLTE 621
            MSVVT+Q+GQCGNQ+G  +F  +++ +    +K                          R F  + D   VARAV+ID EPKVI Q IA                                            S G WRY E +  C   + G+ NNWA GY  HG    EA  + VRRE ERCDRLAG+  + S+AGGTGSG+GTY+T+
Sbjct:    1 MSVVTVQLGQCGNQIGPEVFSTVYEDSTGANAKPYKQCSD------------------ERLFRENSDGALVARAVLIDMEPKVITQAIAKAS-----------------------------------------SSGKWRYGEKSHFC--QKQGSGNNWANGYCVHGPQHKEAVEDLVRREVERCDRLAGIFAMMSVAGGTGSGVGTYVTQ 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13718.6040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE04_ECTSI5.580e-6860.00Tubulin delta chain n=1 Tax=Ectocarpus siliculosus... [more]
A0A672H5L1_SALFA5.730e-2637.91Tubulin delta chain n=2 Tax=Salarias fasciatus Tax... [more]
A0A485LB49_9STRA9.720e-2535.29Tubulin delta chain n=1 Tax=Aphanomyces stellatus ... [more]
W4GTD2_9STRA1.030e-2435.75Tubulin delta chain n=1 Tax=Aphanomyces astaci Tax... [more]
A0A7K8YIS9_9PASS2.890e-2434.11Tubulin delta chain (Fragment) n=2 Tax=Thamnophili... [more]
UPI001916CF555.130e-2431.75tubulin delta chain isoform X4 n=1 Tax=Rattus norv... [more]
A0A1S3EYY9_DIPOR5.750e-2431.75Tubulin delta chain n=3 Tax=Heteromyidae TaxID=100... [more]
A0A8B8UIR3_CAMFR6.540e-2431.75Tubulin delta chain n=2 Tax=Camelus TaxID=9836 Rep... [more]
A0A6P7EM89_SHEEP7.430e-2431.75Tubulin delta chain n=2 Tax=Caprinae TaxID=9963 Re... [more]
W5U812_ICTPU1.380e-2335.71Tubulin delta chain n=5 Tax=Siluroidei TaxID=14897... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13718contigM-pyrifera_M_contig13718:462..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue2.4e-57
Seed eggNOG ortholog2880.D8LE04
Preferred nameTUBD1
KEGG koko:K10390
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0008150,GO:0008589,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0015630,GO:0023051,GO:0023056,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045880,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0065007,GO:0070013
EggNOG free text desc.microtubule nucleation
EggNOG OGsCOG5023@1,KOG1374@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons2
Model size633
Cds size633
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815823.8533883-CDS-M-pyrifera_M_contig13718:461..7621622815823.8533883-CDS-M-pyrifera_M_contig13718:461..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13718 462..762 -
1692277589.8616092-CDS-M-pyrifera_M_contig13718:461..7621692277589.8616092-CDS-M-pyrifera_M_contig13718:461..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13718 462..762 -
1622815823.865521-CDS-M-pyrifera_M_contig13718:879..12111622815823.865521-CDS-M-pyrifera_M_contig13718:879..1211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13718 880..1211 -
1692277589.8747098-CDS-M-pyrifera_M_contig13718:879..12111692277589.8747098-CDS-M-pyrifera_M_contig13718:879..1211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13718 880..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13718.6040.1prot_M-pyrifera_M_contig13718.6040.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13718 462..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13718.6040.1

>prot_M-pyrifera_M_contig13718.6040.1 ID=prot_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
MSVVTIQVGQCGNQLGASLFDALHQHAHPPTSKTTTTTTTTTAEAGNAAE
AEAAAAACRRSFFRDGDVARAVIIDTEPKVIQQIIAGCGRGGGGGGGRGA
GGAGEGGGRGGSRSSGGNGRGGGGGDSGGGSRGAWRYDEGTQVCCHAQGG
AANNWAYGYYTHGAAFAEACLEGVRRETERCDRLAGLCVLHSLAGGTGSG
LGTYLTEVSG*
back to top

mRNA from alignment at M-pyrifera_M_contig13718:462..1211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13718.6040.1 ID=mRNA_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig13718:462..1211- (Macrocystis pyrifera P11B4 male)
ATGTCGGTGGTCACGATCCAAGTGGGCCAATGCGGAAACCAGCTCGGCGC CAGCCTCTTCGACGCCCTCCATCAACACGCCCACCCCCCCACATCAAAAA CCACCACCACCACCACCACCACCACGGCTGAAGCGGGTAACGCAGCCGAG GCAGAAGCAGCAGCCGCCGCGTGCCGGCGAAGCTTCTTCCGCGACGGTGA CGTAGCAAGGGCGGTCATAATCGACACGGAGCCCAAGGTCATCCAGCAGA TCATCGCCGGCTGCGGGCGGGGAGGGGGGGGCGGGGGCGGAAGAGGGGCA GGGGGGGCTGGGGAGGGGGGAGGAAGGGGAGGGTGGGAGGGAGGGCACAC TAGCTGTCAGGATCGGCGAGAGAATAGAACTGTCGCAACCCGTCGCCCAG GCCAGAAACACGAGAGAGGTAACAGCGGTAGCGGCAGAAGTACCCTTAGC AGCCGCAGCAGCGGCGGCAATGGCAGAGGTGGCGGTGGTGGTGATAGCGG CGGAGGCAGCAGAGGGGCGTGGAGGTACGACGAGGGCACGCAGGTGTGCT GCCACGCTCAGGGAGGGGCGGCCAACAACTGGGCCTACGGGTACTACACG CACGGAGCTGCATTTGCGGAGGCGTGCCTTGAGGGGGTGAGGAGAGAGAC GGAGCGGTGCGATCGCTTGGCCGGGCTGTGCGTCTTGCACAGCCTGGCTG GGGGGACGGGGTCTGGCCTTGGTACTTATCTGACCGAGGTGAGTGGTTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13718:462..1211-

>mRNA_M-pyrifera_M_contig13718.6040.1 ID=mRNA_M-pyrifera_M_contig13718.6040.1|Name=mRNA_M-pyrifera_M_contig13718.6040.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig13718:462..1211- (Macrocystis pyrifera P11B4 male)
ATGTCGGTGGTCACGATCCAAGTGGGCCAATGCGGAAACCAGCTCGGCGC
CAGCCTCTTCGACGCCCTCCATCAACACGCCCACCCCCCCACATCAAAAA
CCACCACCACCACCACCACCACCACGGCTGAAGCGGGTAACGCAGCCGAG
GCAGAAGCAGCAGCCGCCGCGTGCCGGCGAAGCTTCTTCCGCGACGGTGA
CGTAGCAAGGGCGGTCATAATCGACACGGAGCCCAAGGTCATCCAGCAGA
TCATCGCCGGCTGCGGGCGGGGAGGGGGGGGCGGGGGCGGAAGAGGGGCA
GGGGGGGCTGGGGAGGGGGGAGGAAGGGGAGGATGTCGGTGGTCACGATC
CAAGTGGGCCAATGCGGAAACCAGCTCGGCGCCAGCCTCTTCGACGCCCT
CCATCAACACGCCCACCCCCCCACATCAAAAACCACCACCACCACCACCA
CCACCACGGCTGAAGCGGGTAACGCAGCCGAGGCAGAAGCAGCAGCCGCC
GCGTGCCGGCGAAGCTTCTTCCGCGACGGTGACGTAGCAAGGGCGGTCAT
AATCGACACGGAGCCCAAGGTCATCCAGCAGATCATCGCCGGCTGCGGGC
GGGGAGGGGGGGGCGGGGGCGGAAGAGGGGCAGGGGGGGCTGGGGAGGGG
GGAGGAAGGGGAGGCAGCCGCAGCAGCGGCGGCAATGGCAGAGGTGGCGG
TGGTGGTGATAGCGGCGGAGGCAGCAGAGGGGCGTGGAGGTACGACGAGG
GCACGCAGGTGTGCTGCCACGCTCAGGGAGGGGCGGCCAACAACTGGGCC
TACGGGTACTACACGCACGGAGCTGCATTTGCGGAGGCGTGCCTTGAGGG
GGTGAGGAGAGAGACGGAGCGGTGCGATCGCTTGGCCGGGCTGTGCGTCT
TGCACAGCCTGGCTGGGGGGACGGGGTCTGGCCTTGGTACTTATCTGACC
GAGGTGAGTGGTTAGCAGCCGCAGCAGCGGCGGCAATGGCAGAGGTGGCG
GTGGTGGTGATAGCGGCGGAGGCAGCAGAGGGGCGTGGAGGTACGACGAG
GGCACGCAGGTGTGCTGCCACGCTCAGGGAGGGGCGGCCAACAACTGGGC
CTACGGGTACTACACGCACGGAGCTGCATTTGCGGAGGCGTGCCTTGAGG
GGGTGAGGAGAGAGACGGAGCGGTGCGATCGCTTGGCCGGGCTGTGCGTC
TTGCACAGCCTGGCTGGGGGGACGGGGTCTGGCCTTGGTACTTATCTGAC
CGAGGTGAGTGGTTAG
back to top