mRNA_M-pyrifera_M_contig13550.5994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13550.5994.1
Unique NamemRNA_M-pyrifera_M_contig13550.5994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13550.5994.1 vs. uniprot
Match: D7FRD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.080e-20
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RQCVGIAAGKRHTLFVFDDGIVFSVGEGFCWQLGTTSAYTNHPVPRAVQRLPKQ 162
            +Q V +AAGKRHTLFV DDG+VFSVGEG  WQLGTTS +TNHP  RAVQRLPKQ
Sbjct:  106 KQFVDLAAGKRHTLFVSDDGLVFSVGEGLSWQLGTTSQFTNHPDRRAVQRLPKQ 159
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BLAST of mRNA_M-pyrifera_M_contig13550.5994.1 vs. uniprot
Match: A0A6H5J9Y8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-19
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RQCVGIAAGKRHTLFVFDDGIVFSVGEGFCWQLGTTSAYTNHPVPRAVQRLPKQ 162
            +Q V +AAGKRHTLFV DDG+VFSVGEG  WQLGTTS + NHP  RAVQRLPKQ
Sbjct:  125 KQFVDLAAGKRHTLFVSDDGLVFSVGEGLSWQLGTTSQFINHPDRRAVQRLPKQ 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13550.5994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRD6_ECTSI5.080e-2077.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Y8_9PHAE3.300e-1975.93WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13550contigM-pyrifera_M_contig13550:7978..8161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue7.7e-17
Seed eggNOG ortholog2880.D7FRD6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.094888-CDS-M-pyrifera_M_contig13550:7978..81611622815820.094888-CDS-M-pyrifera_M_contig13550:7978..8161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13550 7979..8161 -
1692277587.5707994-CDS-M-pyrifera_M_contig13550:7978..81611692277587.5707994-CDS-M-pyrifera_M_contig13550:7978..8161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13550 7979..8161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13550.5994.1prot_M-pyrifera_M_contig13550.5994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13550 7979..8161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13550.5994.1

>prot_M-pyrifera_M_contig13550.5994.1 ID=prot_M-pyrifera_M_contig13550.5994.1|Name=mRNA_M-pyrifera_M_contig13550.5994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
RQCVGIAAGKRHTLFVFDDGIVFSVGEGFCWQLGTTSAYTNHPVPRAVQR
LPKQARGKMTR
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mRNA from alignment at M-pyrifera_M_contig13550:7978..8161-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13550.5994.1 ID=mRNA_M-pyrifera_M_contig13550.5994.1|Name=mRNA_M-pyrifera_M_contig13550.5994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=184bp|location=Sequence derived from alignment at M-pyrifera_M_contig13550:7978..8161- (Macrocystis pyrifera P11B4 male)
CGACAGTGTGTGGGTATTGCAGCGGGCAAGCGCCACACGTTGTTCGTCTT
CGACGACGGGATAGTGTTCTCCGTGGGCGAGGGGTTCTGCTGGCAGCTTG
GTACAACAAGCGCATACACCAACCATCCGGTGCCCCGGGCAGTTCAGAGG
CTCCCAAAGCAGGCGAGAGGGAAAATGACGCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13550:7978..8161-

>mRNA_M-pyrifera_M_contig13550.5994.1 ID=mRNA_M-pyrifera_M_contig13550.5994.1|Name=mRNA_M-pyrifera_M_contig13550.5994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig13550:7978..8161- (Macrocystis pyrifera P11B4 male)
CGACAGTGTGTGGGTATTGCAGCGGGCAAGCGCCACACGTTGTTCGTCTT
CGACGACGGGATAGTGTTCTCCGTGGGCGAGGGGTTCTGCTGGCAGCTTG
GTACAACAAGCGCATACACCAACCATCCGGTGCCCCGGGCAGTTCAGAGG
CTCCCAAAGCAGGCGAGAGGGAAAATGACGCGCCGACAGTGTGTGGGTAT
TGCAGCGGGCAAGCGCCACACGTTGTTCGTCTTCGACGACGGGATAGTGT
TCTCCGTGGGCGAGGGGTTCTGCTGGCAGCTTGGTACAACAAGCGCATAC
ACCAACCATCCGGTGCCCCGGGCAGTTCAGAGGCTCCCAAAGCAGGCGAG
AGGGAAAATGACGCGC
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