mRNA_M-pyrifera_M_contig13517.5981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13517.5981.1
Unique NamemRNA_M-pyrifera_M_contig13517.5981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: D7G4S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S9_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 5.670e-45
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
Query:  163 DGSVRTGGAGDGATARATGRKRQRTPSWEREYQQIWKTVNDLGAEQFTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIMEAAAGLVTGNTGSGRRKSAQTPRG 519
            D + R+ GA  GA      RKR R PSWER+YQQIWK V DLG+EQFTGK+KKA+EARKIVERGGRAPK+ RMPYVMLQG+RKK+KQR+E RE MEA AG+VTGN GS RRKSAQT RG
Sbjct:   39 DVTKRSDGAA-GAXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVVTGNAGSARRKSAQTSRG 156          
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: A0A6H5JA53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA53_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.830e-26
Identity = 65/119 (54.62%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 SRGRKGTTFATADGGAQVFEAPSAYSSAQVAKLPRKPTPKASSXXXXXXXXXXDGSVRTGGAGDGATARATGRKRQRTPSWEREYQQIWKTVNDLGAEQFTGKDKKAHEARKIVERGGR 360
            +R RKG  F+T+ GG QV EAP AYSSAQ  K   +P P+  +          D + R  GA          RKR R PSWER+YQQIWK V DLG+EQFTGK+KKA+EARKIVERGGR
Sbjct:    3 ARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRKKARVDGG-----DVTKRYDGAAXXXXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGR 116          
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: K8Z355_NANGC (Uncharacterized protein (Fragment) n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z355_NANGC)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-11
Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 1
Query:  253 EYQQIWKTVNDLGAEQFTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIMEAAAGLVTGNTGSGRRKSAQTPRGXXXXXXXXXXXXXSRGLSDRTSASFGPAPSMGMMKSGVLHISRNS------APPGVRKRMSEGGRGRG 705
            E++++WK+V DLGA Q TG +KKA++AR+IVE GG+AP   + P+ +L G R K+KQR   R+     +G+V       +R+SA                  S  + +       P P +G MK G L ++R +      A  G R     GGRGRG
Sbjct:   70 EFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAK----KRQSAAALANQILDDGGRRKHDSSGKIGET------PYPVLGKMKGGTLFLNRGTIQRATMAKRGGRGGDKRGGRGRG 216          
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: A0A835Z9Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.220e-9
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  277 VNDLGAEQFTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIMEAAAGLV 468
            VNDLG  QFTGK KK HEA KIV  GG+APK  +MPY +L G+R K+K+R+  R   E  +G  
Sbjct:  427 VNDLGTAQFTGKQKKEHEAAKIVALGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGAA 490          
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: A0A3F2S2E5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2E5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.110e-5
Identity = 40/131 (30.53%), Postives = 60/131 (45.80%), Query Frame = 1
Query:  250 REYQQIWKTVNDLGAEQFTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIMEAAAGLVTGNTGSGRRKSAQTPRGXXXXXXXXXXXXXSRGLSDRTSASFGPAPSMGMMKSGVLHI 642
            +E+   + +V +  +    GK++KAHEA+KI   GG+  K   +PY ML G++ K   R++ RE +   A +VTG     +RKS                   SR    R    FG   + G  K GVL +
Sbjct:   52 KEFDDTFDSVLEFASSNLKGKERKAHEAKKIEALGGKGAKNRSVPYKMLIGMKTKGVARKQRREELIKEADVVTG-----KRKSTNK----------------SRDQQKRKKVDFGVQATKGRFKGGVLDV 161          
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Match: H3GJ80_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJ80_PHYRM)

HSP 1 Score: 53.9 bits (128), Expect = 9.670e-5
Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 1
Query:  250 REYQQIWKTVNDLGAEQFTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIMEAAAGLVTGNTGSGRRKSAQTPRGXXXXXXXXXXXXXSRGLSDRTSASFGPAPSMGMMKSGVLHISRNSA 657
            +E+   +  V +  +    GK+KKAHEA+KI   GG+A K   +PY +L G++ K   R++ RE +   + +VTG     +RKS+                  SR    R    +G   + G  K GVL  S  SA
Sbjct:   52 KEFDDTFDLVLEFASSSLKGKEKKAHEAKKIEALGGKAAKNRSVPYKVLIGLKTKGVARKQRREELLKESDVVTG-----KRKSS----------------GDSRDHQKRKKVDYGVQATKGRFKRGVLDTSMGSA 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13517.5981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G4S9_ECTSI5.670e-4572.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA53_9PHAE4.830e-2654.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8Z355_NANGC1.360e-1135.03Uncharacterized protein (Fragment) n=4 Tax=Monodop... [more]
A0A835Z9Y9_9STRA7.220e-954.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3F2S2E5_9STRA9.110e-530.53Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GJ80_PHYRM9.670e-530.88Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13517contigM-pyrifera_M_contig13517:651..7962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog157072.XP_008876925.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4602)
EggNOG OGs2E2Z7@1,2SA4Y@2759
Ec32 ortholog descriptionProtein of unknown function DUF4602
Ec32 orthologEc-20_000510.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13517.5981.1prot_M-pyrifera_M_contig13517.5981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13517 651..7962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.889367-CDS-M-pyrifera_M_contig13517:650..8581622815818.889367-CDS-M-pyrifera_M_contig13517:650..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 651..858 -
1692277586.7484493-CDS-M-pyrifera_M_contig13517:650..8581692277586.7484493-CDS-M-pyrifera_M_contig13517:650..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 651..858 -
1622815818.9031487-CDS-M-pyrifera_M_contig13517:2414..26441622815818.9031487-CDS-M-pyrifera_M_contig13517:2414..2644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 2415..2644 -
1692277586.7673028-CDS-M-pyrifera_M_contig13517:2414..26441692277586.7673028-CDS-M-pyrifera_M_contig13517:2414..2644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 2415..2644 -
1622815818.9167874-CDS-M-pyrifera_M_contig13517:3496..37631622815818.9167874-CDS-M-pyrifera_M_contig13517:3496..3763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 3497..3763 -
1692277586.7869298-CDS-M-pyrifera_M_contig13517:3496..37631692277586.7869298-CDS-M-pyrifera_M_contig13517:3496..3763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 3497..3763 -
1622815818.9288461-CDS-M-pyrifera_M_contig13517:7869..79621622815818.9288461-CDS-M-pyrifera_M_contig13517:7869..7962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 7870..7962 -
1692277586.7995753-CDS-M-pyrifera_M_contig13517:7869..79621692277586.7995753-CDS-M-pyrifera_M_contig13517:7869..7962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13517 7870..7962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13517.5981.1

>prot_M-pyrifera_M_contig13517.5981.1 ID=prot_M-pyrifera_M_contig13517.5981.1|Name=mRNA_M-pyrifera_M_contig13517.5981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=266bp
MSRGRKGTTFATADGGAQVFEAPSAYSSAQVAKLPRKPTPKASSSTSSSS
SSVGDGSVRTGGAGDGATARATGRKRQRTPSWEREYQQIWKTVNDLGAEQ
FTGKDKKAHEARKIVERGGRAPKEARMPYVMLQGIRKKSKQRQETREIME
AAAGLVTGNTGSGRRKSAQTPRGGGGGGGGGGGGGGSRGLSDRTSASFGP
APSMGMMKSGVLHISRNSAPPGVRKRMSEGGRGRGGGGGGGRGGGRGTSR
GGGRGGGRSGGRGRG*
back to top

mRNA from alignment at M-pyrifera_M_contig13517:651..7962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13517.5981.1 ID=mRNA_M-pyrifera_M_contig13517.5981.1|Name=mRNA_M-pyrifera_M_contig13517.5981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7312bp|location=Sequence derived from alignment at M-pyrifera_M_contig13517:651..7962- (Macrocystis pyrifera P11B4 male)
ATGTCTAGAGGAAGGAAGGGTACCACATTCGCGACGGCTGATGGCGGTGC CCAAGTATTCGAGGCCCCCAGTGCCTATTCTTCGGCGCAAGTGGTGAAGG TGGGCAGGAGTGGACGTGTGGTGATCACCGAGCGAAATCTGGGCCGTGCA TTTTTTAGTCCCATGTTGCATATTTTAAACTCATAAATAACACACAATAA CAGCAGCCAAAGCAACACCAGTACATAGTACATAGCACAAGCACGACCGT ACCCCACAACAGCACCTCGAACACGAGTATCATACCCTTTCAGGTACTAC TACAGGACGCAGATAGCATCGCACCGAGGCTTACAGCAGATGCTGGTGCG ACTAGGCTGAAGGCTGGATATCCGACAACATTGCAGCACGAGCATTCATA CTGGAGCACAGCACGAGTATTCTGTACTATACATGCAATCTCACGTTAGG CACCCACAGACTTCCCAGCAGATGGTGCGGCTCTGCTGTTATAGGCTGTA GGCCTGGCTCGTATCTTGTGGGGAGGCCCTCCTATCGATGAAGTCTCTAC GTACATAGCGTCGTTTGCTGGCATTCCGTGCAGAGGGGGACAGCGTATCC CAAGGGAGTAATAGCCGTAAAGAGCGTTGAGTTTGCACAGAGTTGCGATT GTTTTTTCGGCGCTCGATGCTTCCAGGGAGGGCGAGGCCAATAATACCGA ATAACAAGGTGTATTCGGAAAGATCTGGTCGAGAGCCTTCCGAAAGTATA ATGGTCGACTCTAGGCTGTTTCCTATGCGGTTCGATTTCGAGCTTCCCAT GTGTATTTTTCGATCCCAAAAATGAAAGCATCTGCTTTGCGAATGCAGTC CGAATATGCAAAATCCGACTGGATTTTTTTCGGTTTGAGAATTCGATGGC CTAAGTCGTCGCCCAAAAGCCAACGACTTCGGCCATCAGATTTGCAAATA AAAAACGGCATGGTCTCTAAATTCAACATGTTATCCACGACAGCAAGCAG CAGCAGAATGATCGATGACTTGGATGGTGACACAATAGCTGACGTTGCTT CGCTCCCGACACGCGGTCAATGGGCGGCGCGTCTCTCCGTGGCCGGAGTG CAATCGGCTGGCGCGGGTTCGGGCCTACTGTAGAGACCAGGGGAAACGCG CTCGGCGCGCACCTCTCCGTGGGTACGTACTCGTAGACTACAGCAGCAGC AGTCAAGTCACATCATGTCAAAATACAAAAATATCAAGACAGGTTGAAGC GCACTCGGCACGTCTCTTCGCTGCCAGACCAGAGACAGTCAGCCTTGGCT TGGACGCTTGGGTCCAACGCGCAGTGCAGCGCACTGGGCGCGCCTCTTCG CGGCGCCAGGCCACATCCATAGCAGTTGGTGTCGGCGTTTACTCGAATCT CTGCAGGCACAATACACCCGATTTTTTTGCGTAGGAAGACTGTTTCAATT TGCGAACGTCGCATCTGAAAATGCGATCGGGTCACAATCTGAGTTTCCCA TGAGGTTGTGAGCTTCGGATTTTAACCCGATCGCATTTTCAGCTGTGAAC TCGGCAAATCGTAACAGTCTTCCTATAAGAAAAAATCGGATTTATTATGC GTGCAGAGATTCGAGCAAACGCCGAGACCACCTGCTGTTGTTGTGGTCTG GCTCCGCGAAGAGACGCGCTGGGTGCGCTGCACTGCGCGTAGGACGCAAG CGTCCGAGCGACGAAGAGACGTGCCGAGTGCGCTAGAGTCATTTGTCTTG GTATTTTGTACGTGTCTACGAGTACGTATCCACGGAAAGGTGCGCGCCGA GTGCGCTTCTCTTGGTCTCTAGGCCAGAGCCCGCGCCAGCCGACTGTAGT CTGGCCACGGAGAGACGCGCCGACCCCGCGTCGGGCGCGAAGCAACGTCG CTATACAGCGGTGTCACCATCCAACGCATCGATTGTTCCGCTGCTGCTTG CTGTCGTAGACATCATCTTGGATTTAGAGACTATGCCATTTTTCGATTTG AAAATCCGATGACCCAAGTCGTCGGATTTTGGGCCAAAATCTGACGACTT GGGTCATCGGAATCTCAAATCGAAACATTTCGGGCTGTGTTACCATCCAA CTCATCGATTGTTCTGCTGCTGCTTTTGCTGTCGTGGATAACATTTTGAA TTTAGAGACCATGCCATTGTACGATTCGAGAATCCGATGACCCAAATCGT CGGATTTTGGGCCAAAATCTGACGACCTGGGTCATCAGATTCTCAAATCG AAACATTTCCGATCGGATTTTGCGTATTCGGACTGCACAAGCAGGTGCTT TCATTTTTTCGATCGAAAAATCCAAATCTGCTGCTCGAAATCGAACCGCA ATAGGAAACAGCCCTACTAGTAGCAAGCTATGAACTTGGCGAGTCGAAAC AGTCTTCGTATGCGAAAAAAGCGGATTTATTTGTCTGTGCAGAGATCCGA GCAAACGCCGAGACTAACGCTGTTGTTGCGGTCTGGCGCCGCGAAGAGAC GCGCCGAGTGCGCTGCACTTCGCGTAGGACCCAAGCGTCCGGGCCCACGC TACTCTGGTCTGGCGGCAAAGAGAAGTGCCGAGTGCGCTCGAATGAACCT GTCTTGGTATTTGGTATTTTGACACAATGAAGCACCCGAGCCCAGCATGC TGACTGACTGACTGACTGCTGCTGCTGTAGTCTACGAGTACGTACCCACG GAGTGATGCGCGCCGAGTGCGCTTCTCTTGGTCTCTAGGCCCGAGCCCGC GCCAACCGACCGAGTCTGGCCACGGAGAGCCGACCGCCGACTGCGCGTCG GGCGCGAAGCAACGTCGCTATATAGCTGTGTCACCATCCAACTCATCGAT CGTTCTGCTGCTACTTGCTTGCGTGGATAGCGTATTGATTTCAGAGACCA TGTCATTTTGCGATTTGAAACTGTGATGGCCCCAAGTCGTCGGATATTCG CGCCGACTTGGGCCATCGGATTCTCCAATGGATTTTTTTCCGGTCCGACT TTGCACATTCGTCCTTCATAGACAGATGCTTTCATTTTTGGGATCGAAAA ATACGAATCTGCAGCTCGAAATCGAACCGCATAGGAAATAGCCTGTACGG TAGGCTCGAAAAGGGGTGCGTTACACGCGGAGCCCGTGTTCAAACGTGAG AAAAACGCCACTTGTGCCTCCAACTCCTTATGGAAGCAATGCACCATCCC CCTCTTGTTCTCTCCGATTCCTGGAGGTTACGTACGTAATGGTTAGTATG TGTCGATGTGCAGTCTGGCCGCTGATGACCAACCACACTTACAATAATTT CGTCACTGTTTTCTTTCCTTGGTTTCTACCAGGCGTGTATCAAGTATTTC AACCTCACAGCTCAGTAGTGATGAAGAATCGAGTTCGACACGATACCCGA TAATTAAAAAAAACAAAAAACTACAGCAGTATATACGTACCCGATACGAT TTCGACCGTTTTTTGTACATCGAAGCTTTCGTTCCGTATTTGCGTGAAAG GCACGGAGGATGCTAGGGGATGGATGGAGGATGGAGGGCAACAAAACACG TTCGATAGGTTCGATAGGTCTGATACGATATGTTGAAACTTTCGATACGA TATCCAACACTACAGCTGAGTCTTTTTCTAATACCATATACTCGTATGGT GATTGTATTCAAATACTTCGTACGAGTGTGTACTTTGTGAAACAGTAATA GTAAGTGTGACCTACGCAGCTGACACATCCCCTACTCTTGGCAAAGCTAC ATGCGACCCCCCATAAACTTCGTGTGTATTACGTCCAAATGTAGACACAC ACACTCCTTGAATTCTGCAGCTTTCATATTTTGTCCTCCTCATCTATGTC TATAAAGTTAAACAACAACAGCCGTGACGTCGTATATAAAACATCCTGGA TGATACCATATAAAACCCGTGTTAATAGTGCGCGCGATCGAAGTTATCAC TAGTATCACTAGTATCACTAGTATCACTAGTATCACTATAATAGTATCAC ACACAGCTTGCAAAGATGAATTTCGACGAAATCCTCGACCGCACAGCTGG TTGTTTGTTTGTTTTTTCAAAATTTTATCAAGTAGGTATGCACACCCACA CCCACACCGACACCCCCGAGTATCGACTACCAAAAAAATGACACTTCGTT TCAATGACTCTTGCGGTCCTTGTTTCTTCCCTCTCCTTTCGGTGCTCAGG CAAAACTCCCTAGAAAGCCGACGCCCAAGGCCTCCTCCTCCACCTCCTCC TCCTCCTCCAGTGTCGGTGATGGCTCAGTCAGAACGGGGGGAGCGGGCGA CGGGGCAACTGCAAGAGCGACGGGGAGAAAGCGCCAGAGGACCCCGTCAT GGGAACGCGAGTACCAGCAGATATGGAAGACGGTCAACGACCTCGGAGCC GAGCAGTTCACGGGCAAGGACAAGAAGGCGCACGAGGCGCGCAAGATCGT CGAGAGGGGTGGCAGGGTGAGAGAGAGAGGGAGAAAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGCGGGACTTGTTTTTTTTTTTTGCATTTTTTTTT TTTTCACCCCCCCCCCCTTTTTTTCCCGCCCCCCCTTCTTGAAGCCATTA ATTATCATGCAAGGGGCATATGAGCCCTTCAGAACTGCACCCACGTTTCC GGGAAAACAGCAGTGCTAGGAATTTGGGAAAAATTGCCAAGGAATTTGTG TACCAGGTGGGTTGGTTTTGAGGTATTGCGGGGAAACATGTTGATACAGC AGTAGTTATCAGTCAGAATCAGATGTGAAGTGTAAGCATTCCGTAGGGCG ATACCTGCTTTTCTGGTTCGTTGTGGGCTCTGATTTATTTCGTTTCTCGT CCTCCTGATAGTAAATAAAAAAAGGTTGACTCTCTGCACGAAAAGGTGCA GGCAGGCTGCTGCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGTCTCCCCC GACGGGTTTCGGGGGCACCCCTATGGTGGTAGAGAGGATACTCTATATCT GCTCTGCTTTTTTTTTTTTTTTTAAGCACCAGTTATGTACCTGGTAAGTA CGCTTTGCACTTGAGGGGACGCCTGACGTACTATATATCGACCGTGTTGC GATGCTCGACCGGTTTCTCTTGCCACCGCCACTGCCTGTTTTGTCTGAAA TTCTCCCTGTGTTGCGCAAACCTCAAAATTGCTTTGTTTTCTCTTGGCCC ATGGCACCTCACCCCATCGCCACCCCACCCCACCCTGCTAGCTACACCCT ACCCTACTCCACCCCACCCCGCTCCACCCCACCCTATCCCGCCCTACCCC ACCCCATGGCCACGCCAGGCCCCCAAAGAGGCAAGAATGCCGTACGTGAT GCTCCAGGGGATCCGAAAGAAGAGCAAACAGCGCCAGGAAACGCGCGAAA TTATGGAGGCCGCAGCAGGCTTGGTCACTGGAAACACTGGCTCGGGCAGA AGGAAATCCGCGCAAACGCCTCGCGGTGGTGGTGGTGGTGGTGGTGGCGG TGGTGGTGGTGGCGGGTCGCGCGGCCTCAGCGATCGAACCAGCGCTAGGT GGGTCACCCGAATTTTTTCCCCGATATACACGGCAGCGTGCGCAGAAGTT TTTTATGGTGCATACCTTTTTCCGGTGCTCTTCTCTCTCTGTCTCTTTTT TTCGATCTCCAATGGCTTCATCCCCATCCGTAGTGTTTCGCGACTTAATA CAGGTCCAGAATTGACGAAACGGTTGATTTTTTCACCCTCATTTTCACCC TCATTACATCTTCGTTTTTTCCCACGCGTTCGGTTTGAGGGTTGTTGTGC ATTGGGTTGTAGGGTTAGTGTTCGGAGCCGAGTATGTTTTACCCATGTGT GTTGGAAGCTGGGCCAAGGTCTATATAAATGGTCGAAACTTGTTTAGGCG CATTGCATGGAACAGATTCACCGATCCTCACTCTCATGATCTCAGACATT TCAGAGAAGATAGATCTGTGTGATCCACGGCAGGTCACGTTGCCGGGCGG TAGCCGTGTAATCTGCATGATCTTACACGGCACATGTCTCCGGGGTTGCA TCTTCTCCAATATCCTATGATCTTACACGCAACATCCGGTATCGATAGTT TAGGATGTAGATCATGCACGTCGTGATTTGCCGGCTGTTTGATACCTTGT GCTCGGTTTGCCGCCCGAGTTTTTGAAAAATATATATTTAGCTGTTGCAT CAGGGGTGTCCGTAAAAAAGAGAAAACGACATGCCACACCCCCAGAGGTC GGAATGGGAAAAAAAAACGTTGCAACCGTTGTGATCACATGCTGAAATAA CATTTATTTATTTTTTCTTTCATTTTTTCATTTTTTTCACTTGGTTCTAG TAACCCCCCCCCCCTTGTCTAGCGAAAAAAAACTGTGACGATTCACTTTT TGTTTCCGGGCACCCTGGGTTGTATCTACCTTTCGCATGCCCCCGTCCGC CACCACCGCCTTCTCGACTCCCTCGTTGTGTCTATACGAAATCCTAACCC TTCTCTCGTTTTCGGTTGCACTGTGCTCCCTACCGGTGTGGCTCCGGACT GGCTCCCTTCAACCCCCCTTCTAACCCCCGCTTTGTATCATACGAAACCC CCTCGTATCCTTTTCGTGTACAGGGGAATCACCGTGTTTTCAATCCACAA AACATACCAGATAAAGCACTTAAACTATCACCTGTACTATTCTTGAGGCG ATTTTCACGGGGGTTTTTTTCAGGAAACCCAAAACGCACGGCGATGCCGC GCTCGGGTAGCTTGACCTTAAGCTGGGTTAGCGTTGGAGTTAGGGTTGCG GTCAGGTCGACGCCCTCTCGTGATTTGTAAAAACGAATCATCCAAAAGCC CAAAGCAAGCACTAAAAAAAAGATCTCGAAAAATCATACCCTGTACTATT TTTGGTGCTTTTATCTGGTATGTTTTTTGTGCAACGACTGGTAAAATGGT AAATCGACCTGTCTCTGTTTGCACCGCACTCCTCCCCTCGGTGCAGCCCC GAACCGGCTCCTTCAGTCCCCTTCCTAACCCTCCGCCTGGTCATCGTACA AAACCCTAACCTTCCTTCCCGTTTAATTTCGCACGGTTCACTCGCTCGGT ACAGCTTCGGGCCGGCTCCTTCGATGGGAATGATGAAGTCGGGCGTGCTG CACATCAGTCGAAACTCGGCCCCCCCGGGGGTCCGTAAGCGCATGTCTGA GGGCGGTCGAGGAAGAGGCGGTGGTGGGGGCGGGGGGAGGGGGGGGGGGA GGGGAACATCTAGAGGAGGAGGAAGAGGTGGGGGGAGGAGCGGAGGGCGG GGTAGGGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13517:651..7962-

>mRNA_M-pyrifera_M_contig13517.5981.1 ID=mRNA_M-pyrifera_M_contig13517.5981.1|Name=mRNA_M-pyrifera_M_contig13517.5981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig13517:651..7962- (Macrocystis pyrifera P11B4 male)
ATGTCTAGAGGAAGGAAGGGTACCACATTCGCGACGGCTGATGGCGGTGC
CCAAGTATTCGAGGCCCCCAGTGCCTATTCTTCGGCGCAAGTGATGTCTA
GAGGAAGGAAGGGTACCACATTCGCGACGGCTGATGGCGGTGCCCAAGTA
TTCGAGGCCCCCAGTGCCTATTCTTCGGCGCAAGTGGCAAAACTCCCTAG
AAAGCCGACGCCCAAGGCCTCCTCCTCCACCTCCTCCTCCTCCTCCAGTG
TCGGTGATGGCTCAGTCAGAACGGGGGGAGCGGGCGACGGGGCAACTGCA
AGAGCGACGGGGAGAAAGCGCCAGAGGACCCCGTCATGGGAACGCGAGTA
CCAGCAGATATGGAAGACGGTCAACGACCTCGGAGCCGAGCAGTTCACGG
GCAAGGACAAGAAGGCGCACGAGGCGCGCAAGATCGTCGAGAGGGGTGGC
AGGGCAAAACTCCCTAGAAAGCCGACGCCCAAGGCCTCCTCCTCCACCTC
CTCCTCCTCCTCCAGTGTCGGTGATGGCTCAGTCAGAACGGGGGGAGCGG
GCGACGGGGCAACTGCAAGAGCGACGGGGAGAAAGCGCCAGAGGACCCCG
TCATGGGAACGCGAGTACCAGCAGATATGGAAGACGGTCAACGACCTCGG
AGCCGAGCAGTTCACGGGCAAGGACAAGAAGGCGCACGAGGCGCGCAAGA
TCGTCGAGAGGGGTGGCAGGGCCCCCAAAGAGGCAAGAATGCCGTACGTG
ATGCTCCAGGGGATCCGAAAGAAGAGCAAACAGCGCCAGGAAACGCGCGA
AATTATGGAGGCCGCAGCAGGCTTGGTCACTGGAAACACTGGCTCGGGCA
GAAGGAAATCCGCGCAAACGCCTCGCGGTGGTGGTGGTGGTGGTGGTGGC
GGTGGTGGTGGTGGCGGGTCGCGCGGCCTCAGCGATCGAACCAGCGCTAG
GCCCCCAAAGAGGCAAGAATGCCGTACGTGATGCTCCAGGGGATCCGAAA
GAAGAGCAAACAGCGCCAGGAAACGCGCGAAATTATGGAGGCCGCAGCAG
GCTTGGTCACTGGAAACACTGGCTCGGGCAGAAGGAAATCCGCGCAAACG
CCTCGCGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTGGTGGTGGCGGGTC
GCGCGGCCTCAGCGATCGAACCAGCGCTAGCTTCGGGCCGGCTCCTTCGA
TGGGAATGATGAAGTCGGGCGTGCTGCACATCAGTCGAAACTCGGCCCCC
CCGGGGGTCCGTAAGCGCATGTCTGAGGGCGGTCGAGGAAGAGGCGGTGG
TGGGGGCGGGGGGAGGGGGGGGGGGAGGGGAACATCTAGAGGAGGAGGAA
GAGGTGGGGGGAGGAGCGGAGGGCGGGGTAGGGGGTGACTTCGGGCCGGC
TCCTTCGATGGGAATGATGAAGTCGGGCGTGCTGCACATCAGTCGAAACT
CGGCCCCCCCGGGGGTCCGTAAGCGCATGTCTGAGGGCGGTCGAGGAAGA
GGCGGTGGTGGGGGCGGGGGGAGGGGGGGGGGGAGGGGAACATCTAGAGG
AGGAGGAAGAGGTGGGGGGAGGAGCGGAGGGCGGGGTAGGGGGTGA
back to top