mRNA_M-pyrifera_M_contig1341.5952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1341.5952.1
Unique NamemRNA_M-pyrifera_M_contig1341.5952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.710e-98
Identity = 141/150 (94.00%), Postives = 147/150 (98.00%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 450
            +TRDRDLDRAF RYGRIEKIDVRMGFAFIE+EDRRDAEDAVAEMDGREFDGAR+VVQPGRGHRPNGPK+ATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFR GRRWGVVEY+SRDDMKAAIR LDDTRLGGKYIRVREEN+
Sbjct:   13 HTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENS 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.520e-37
Identity = 62/130 (47.69%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:    4 TRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIR 393
            TR+RDL+R F RYGR+E++D++ GFAF+E+ D RDA+DAV +M GR+ DG R+ V+  +G R  G +   + +  RI VEGLD  TSWQDLKDFGR+ G ++Y+DV+    +++G++EY  ++D + A++
Sbjct:   16 TRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLKDFGRKVGDIMYTDVWVDGSKKFGIMEYGRKEDYEEALK 143
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: T1D6F1_9DIPT (Putative b52 (Fragment) n=1 Tax=Psorophora albipes TaxID=869069 RepID=T1D6F1_9DIPT)

HSP 1 Score: 138 bits (347), Expect = 1.850e-36
Identity = 74/161 (45.96%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG------------HRPNGPKYATR-RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 444
            + R+RDL+R F  YGRI +I ++ G+ F+E+ED RDA+DAV EM+G++  G RV ++P RG             R    +Y    RT+HR+ VE L S  SWQDLKD+ RQAG+V Y+D   R  +  GVVE+ +  +MKAAI+ LDDT L G+ IR++E+
Sbjct:   14 DVRERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRERERRGGRSRYGPPLRTKHRLIVENLSSRISWQDLKDYMRQAGEVTYADAH-RDRKNEGVVEFATSSEMKAAIKQLDDTELNGRRIRLQED 173
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A6P7IBI1_9TELE (serine/arginine-rich splicing factor 6-like isoform X1 n=3 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IBI1_9TELE)

HSP 1 Score: 138 bits (347), Expect = 5.650e-36
Identity = 73/166 (43.98%), Postives = 104/166 (62.65%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 450
            + R++D+ R FS YG++ ++D++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  YA R                RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYAGRSSSWNRPGRDKYGPPVRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDINGRKIRLVEDKH 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A7N9ASU1_9TELE (Serine/arginine-rich splicing factor 6-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A7N9ASU1_9TELE)

HSP 1 Score: 135 bits (341), Expect = 7.220e-36
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 444
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RV+++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVIIEHARGPRRDGYGYGGRSGGYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A182HC83_AEDAL (Uncharacterized protein n=4 Tax=Aedini TaxID=1056966 RepID=A0A182HC83_AEDAL)

HSP 1 Score: 137 bits (346), Expect = 1.380e-35
Identity = 73/161 (45.34%), Postives = 102/161 (63.35%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 444
            + R+RDL+R F  YGRI +I ++ G+ F+E+ED RDA+DAV EM+G++  G RV ++P RG          R             RT+HR+ VE L S  SWQDLKD+ RQAG+V Y+D   R  +  GVVE+ +  +MKAAI+ LDDT L G+ IR++E+
Sbjct:   14 DVRERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRDRERRGGRSRFGPPLRTKHRLIVENLSSRISWQDLKDYMRQAGEVTYADAH-RDRKNEGVVEFATASEMKAAIKQLDDTELNGRRIRLQED 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A6A4SRR9_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SRR9_SCOMX)

HSP 1 Score: 133 bits (334), Expect = 1.620e-35
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG--------------------HRPNGPKYAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 450
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG                    +RP   KY    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKS 181
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A3Q4H868_NEOBR (Serine/arginine-rich splicing factor 6-like n=28 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q4H868_NEOBR)

HSP 1 Score: 136 bits (342), Expect = 2.000e-35
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 444
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYGGRSGGYSSWNRTGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A3Q1AJP8_AMPOC (Serine/arginine-rich splicing factor 6-like n=3 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1AJP8_AMPOC)

HSP 1 Score: 136 bits (342), Expect = 2.140e-35
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 444
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYGGRSNSYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A8D3DI69_SCOMX (Serine and arginine rich splicing factor 6b n=2 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3DI69_SCOMX)

HSP 1 Score: 133 bits (334), Expect = 2.890e-35
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG--------------------HRPNGPKYAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 450
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG                    +RP   KY    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKS 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI2.710e-9894.00Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A7S0Q5F1_9EUKA1.520e-3747.69Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
T1D6F1_9DIPT1.850e-3645.96Putative b52 (Fragment) n=1 Tax=Psorophora albipes... [more]
A0A6P7IBI1_9TELE5.650e-3643.98serine/arginine-rich splicing factor 6-like isofor... [more]
A0A7N9ASU1_9TELE7.220e-3643.11Serine/arginine-rich splicing factor 6-like n=2 Ta... [more]
A0A182HC83_AEDAL1.380e-3545.34Uncharacterized protein n=4 Tax=Aedini TaxID=10569... [more]
A0A6A4SRR9_SCOMX1.620e-3542.69Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A3Q4H868_NEOBR2.000e-3543.71Serine/arginine-rich splicing factor 6-like n=28 T... [more]
A0A3Q1AJP8_AMPOC2.140e-3543.71Serine/arginine-rich splicing factor 6-like n=3 Ta... [more]
A0A8D3DI69_SCOMX2.890e-3542.69Serine and arginine rich splicing factor 6b n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1341contigM-pyrifera_M_contig1341:18939..26346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue6.1e-77
Seed eggNOG ortholog2880.D7FXG5
Preferred nameNPL3
KEGG koko:K12893,ko:K12896,ko:K14651
KEGG Pathwayko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0106@2759
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-07_003150.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Exons6
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1341.5952.1prot_M-pyrifera_M_contig1341.5952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1341 18939..26346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.6499364-CDS-M-pyrifera_M_contig1341:18938..189921622815816.6499364-CDS-M-pyrifera_M_contig1341:18938..18992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 18939..18992 +
1692277585.284792-CDS-M-pyrifera_M_contig1341:18938..189921692277585.284792-CDS-M-pyrifera_M_contig1341:18938..18992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 18939..18992 +
1622815816.6634636-CDS-M-pyrifera_M_contig1341:20467..205401622815816.6634636-CDS-M-pyrifera_M_contig1341:20467..20540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 20468..20540 +
1692277585.295115-CDS-M-pyrifera_M_contig1341:20467..205401692277585.295115-CDS-M-pyrifera_M_contig1341:20467..20540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 20468..20540 +
1622815816.6766737-CDS-M-pyrifera_M_contig1341:22864..230161622815816.6766737-CDS-M-pyrifera_M_contig1341:22864..23016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 22865..23016 +
1692277585.3062806-CDS-M-pyrifera_M_contig1341:22864..230161692277585.3062806-CDS-M-pyrifera_M_contig1341:22864..23016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 22865..23016 +
1622815816.6893861-CDS-M-pyrifera_M_contig1341:24149..242161622815816.6893861-CDS-M-pyrifera_M_contig1341:24149..24216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 24150..24216 +
1692277585.3183334-CDS-M-pyrifera_M_contig1341:24149..242161692277585.3183334-CDS-M-pyrifera_M_contig1341:24149..24216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 24150..24216 +
1622815816.7011907-CDS-M-pyrifera_M_contig1341:25074..251691622815816.7011907-CDS-M-pyrifera_M_contig1341:25074..25169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 25075..25169 +
1692277585.3298202-CDS-M-pyrifera_M_contig1341:25074..251691692277585.3298202-CDS-M-pyrifera_M_contig1341:25074..25169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 25075..25169 +
1622815816.7141762-CDS-M-pyrifera_M_contig1341:26148..263461622815816.7141762-CDS-M-pyrifera_M_contig1341:26148..26346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 26149..26346 +
1692277585.3485196-CDS-M-pyrifera_M_contig1341:26148..263461692277585.3485196-CDS-M-pyrifera_M_contig1341:26148..26346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1341 26149..26346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1341.5952.1

>prot_M-pyrifera_M_contig1341.5952.1 ID=prot_M-pyrifera_M_contig1341.5952.1|Name=mRNA_M-pyrifera_M_contig1341.5952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFD
GARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAG
QVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN
NRDSRSRSRSRSRRSRSFSRSPPARRRERSPSPEVYRGRGGGGGGRGRDA
SRSRSRSPARHR*
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mRNA from alignment at M-pyrifera_M_contig1341:18939..26346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1341.5952.1 ID=mRNA_M-pyrifera_M_contig1341.5952.1|Name=mRNA_M-pyrifera_M_contig1341.5952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7408bp|location=Sequence derived from alignment at M-pyrifera_M_contig1341:18939..26346+ (Macrocystis pyrifera P11B4 male)
AACACCCGTGACCGTGACCTGGACCGCGCCTTCAGCAGATATGGACGGAT
CGAGGTGAGGTATCCAAAAAAAAATTGATACATGAGACGTACTCGTCGTA
AAGCGAAAAACAGAACTTGAGGCAGACAGGATAGTACTGCAGTTCTGCCG
CATGCCGTATGACACTTATCACCCGTGTGATAAGATAACACACCCCCTCG
GACGATTTTTCCAATCTGATTTTCGCGACAACGGGGAGGGTGTAAACGCC
GAGCGACGCGTCTATGAAAATGTCTCGTGGACTCTTCTGGGGCGCACGTA
TGTGCGGCATTTTCGCTTGTCTGGTGTCAGCGGGCAGCAGTCCGAGTAGC
ACTACTTCTGTACCAGGTGCCAGATATGCTGCAGGCGCGTGGTATCACTC
CTTGCGATTTGGTATCGACATGCAAACCACCACCCCTACTCGTAGCAGCC
TCGCAACCGGCTTTACGTGGTGTAACCGATCTTTTTGGTGTAACCGTCGC
TTTGATTCGTCAGTTTTTCGATCGCTTTTATTTGTCAGTTTTTGCCTCTG
ATGTCCGAAAAGGGTAACATTTGGCTGATATATTCAGTAGGGACAGCACG
CATTGTTTCTGAGGCTGCTTTCTTGATTATAGTATAGGAGCTCTACACCT
CTCGCCCTACAAGCGTTTTCGGGAAAAAAATGCAAGCCAAGACCGGTTAT
ACACAATCTAATCCCACGAGCTAGAGATCTAATAAAGTTAACATTGAATC
CAGAGATGAAGGGCACTCCTTTCCCACTTGAGGGACCTGGTCAGTAACAA
ATGTTGGGCTCAACCGATTTCAAGACAATTCGGTTTAAGGCCATAGTAGA
GGCAAGGCCAGGTAAATCGGCTTGGTCACGAGAAAAAACTATTCATACTT
GGGTTTTAGATCATATCATTTTTCAGTAGTATAAGATAACACCAGAAGAG
GGATAAGACCACGCTTATTAATCGTACAGTAGCTTGTCATGGGGTGGTCT
TGAAAGTTGTACACCATTGGTGCTTGCAACTACTGCTGGAGTTTCGTACA
ATCAACCCTTTCACAACAACACTCCCCTTCGGGGACAACTGGCTTAAAAT
TAGAGTCAAATAGATGTTTCTGCACAACTATTACGGGGGTCCATAGTTAA
CGCGACCAAATTTTGTTAGTAAAAATAGGCAAATATATAGGTTTTTATGT
ACACCATAGGTCCTGTTAACTATGGACCCCCGTAATAGTGCATTCTACCC
AAAGGGTCAACTTTTAATCCTACTATACTTGGTAGCTCCTCATATGATGA
GCCCTGTCAGTGAGAAATGTTTGGGCTCAAAAGTGTTAAAAGTACTCCTG
ATTGCGAGCCTTACCCTATTTGCAGGCCCTACCCTGATTGCAACCCCTAC
TGTAGCACGGCTGATTTGTTGTACGTGTATACGTGTTTCTTAGTACATGA
GGTCTGTCGTAGTTGCGTTCTCACAATTTCCCCTCCCCCACTCTCCTCGA
TGATGACATTCTTGTCCTTGGTCCTTCAGAAAATCGACGTGAGGATGGGG
TTTGCGTTTATCGAGTACGAGGACCGCCGCGACGCGGAGGATGCAGTTGC
CGGTGAGTCCAGATGTTGAGGTCCTTTTGTTCACACCTGGTATTTATTAT
TTACCGTTGTTCTTTTATACTTGTCGTTGCCTTACAAGGTCACGCGATAT
TTATCCTTTTCCATCAACCTTCTACTTTGCCTTACAGCCTTGTCCTTGGC
CTTATAATTTTCCTTTTTTCTTCTGTTTTCAGTTGGTGTTTTTCGGTTTT
TCTTTATTCTTAGCCTTGCCCTCACCCTTTTCCTCGTTGTCGTCATTGTT
CTTGTCCTATAATATAGTACCTAGTAAGCCTTTTCCTTGTCTTTTGTCTT
CCCCTGGCAGTTATCTTGATGCATATTCTTATCCCTACCTCCCTACCTTT
ACCCTAAGACTTGCCAGGTACCGGGTATTCTTGACGTGTTTTTGTTTTCC
TTGAACTTACGCACCATTTGTACATAATGCCTCAGGACAGGCAGTCACGT
ACCAGTAGAATTTTATTGTTGGTAGAATGATACTGCTGTAGTGTGATACG
AAAGAGCTGTGAAAATTCGCATGTTGACCTGCACAGAATAGTATGTTCCA
GGTAGCGTGTACATGGAAACATAGTAACTTGTACCGGTACCAGGTATTGC
TATTCAATTGTCCGAAAGAGTATCAGTAACATCAGTAAATCATCGCACTA
TAAGACTACGAGACACCTTTCATGCCGACGCAGCACGCACTATTAATAGT
ACGTCGCTGGCTCTGAACACCAATTCCGGACAACATCAAAAAGTACGCCA
GGCGTTCCCCTGCGTCTCAACGCCCACCGCCGGATTTTCATGTAAAAGCA
GTATCGAAATTACTATTAATAATAGTTTTGAAGAAAATACTTACCAGGTA
CTGTAGGTCGGCAGGTCTGAAGAGCACTACTGCAAAGTACGCGAACAGGG
TATTTGATGATTTGGTGATTTTAAAGTGCACCCACGTTTCTTGGAGACAA
ATTCCTTGTGTGCCTTGTGTGCCGTATGCTGGTCGCAGTAGCAGACGGGT
TCACGTCAACAACCGACGTGAAGAAAGCCAGTGAGACTACGAATGGTAAC
TATTAATATCAATGTAATACCCGTTTATAATCCGGGTTGAACCCGAAACG
AGCAGCGTGCTGCCAGTGAAACTCTCTGACATCGCTCAACGGGGTTCCGT
TGACACGCAGAGAGTATACAACTTTGTGGCGCTTGTCCCCATGTCCACGT
GGTTAAAAACTGGTCAAAGGTGCTGCTTTGACTCGTGGACAAGGGAGCGA
GCTACACAAAATTGCACACTTTAGGTGTGTCTTAATGCACCCAGAAAGTT
TCTATAACACCGTTCTGGTCGGAATATACCCCCTCCTTGTCAGTTTCAAA
AATCGGGCCTGGTACGATAAACGGGTGCAGTATTAATAGTAGTCCCTCTA
TAATACCGGTATGCGCCAGCCAACAATACCGGCACTATAGCGGCAACCGG
CACTCTTACGTAGGACCATAGTAAATAGGACCAATTATTGTTGGTAAAAA
TAGGTAAATATATAGGTTTTTGTACGTACCGTAGGTCCTATTTACTATGG
TCCTCCGTAATAACCACTCAGCACATTACCACACTGGTAAAATCCATCTG
TGCCAAGCGGTTCCACGTGCACTATAGCAGGCAACCGGCACTACTCGGCC
GGCACTATAGAGTGACCACTACTCTGTACATTCCCGACCCGAGGTAATTA
CAGCAGTAATAGTATTGTATCGTAAATACTGTAGTCTTATTGGCCTGATA
TCAGCGGTTGAAGTGAACCCTTCCACTACTGCAACACTCGTCTTACACAA
TTTCCAAGTACTTTGCTCCGAATAACGTGGGTGCAGGCAGTATTACATGA
CCTAATAATCAATGCCCTCTTTACTCCTACCGATGTATACCTGTTGCAAT
GCCACTGCGCACGATGCACTTATTCTCGCGTGCTAGCTATGATTGCTGAG
CAGCCACGTTTTTGACCGCGTGGACACAGCGGCAGGCTACACTAAGCTGT
ATACTTCTGGTGTGACGATGGCCGGAAGGTGCTCTCGCAGCACCCCGTAG
GGCGCGCGGCTTGTTTGTTGAACGGCGAGTCTGTGTTTTCCGCCGCCCGC
CCGTAATAAGGGTTCTGCCAGACATATAACGCCGATATTATAGCAAGCAA
CTCCCCCCAGGATTGGTTTCTTGGATCGCCAGGAACAAAATTTTGAATAG
AGCTGGTTAACTATACCTACGAAGTTCTATATTCTCGAGTGTTACAAAAC
TGTCACGTGCTGTTTTTTCCGTACGTTCATACCGTGGTAGACTCATGCTT
TTCGTTTTTGTCATGTTTTTTTGCAGAGATGGACGGCCGCGAGTTCGATG
GGGCTCGGGTCGTCGTGCAGCCCGGGCGTGGCCACCGCCCGAACGGGCCC
AAGTACGCGACGCGCCGCACGGAGCACCGCATCACCGTGGAAGGCCTGGA
CTCTCACACCAGCTGGCAGGATCTCAAGGTAATCATTATATGCTACCTGG
TGTCCACTTGATGTATAATTATTGCCCTCGGTGACACGTTCAGATACATT
AAGCAAGTCACACCCGTCCGATGTTCGCATTCTCGGCGTGCGAAAAACAA
TGGTTGTCTCAAGTGACGAAAAGGGCCCACGGTTGGACCTGTGCGTAACC
CCTTTTTAGGACTGCTGTCCCAACTTGGAATTAGACTTGGGTACATGTTT
CGGTACAGCAGTGCAGTACTACAATATTAATAGAAGGGTTCAGCACGTTA
GGGGGACAAAGTGCTTTGAACATGCATAGATTGGACATACATAGAGTTGT
GCACTATTGCAGTAGTGTACGTAAGGATTTTCGGCACCGATATTTTTGGC
ACAAAGTTACAACAACAGTGCCCCCAAACAAGACTTGAGAATATCTTATA
CAGCAGTGGTATACACGCAAGAAGATGGAAATGACCCCTGTACCCTTGGA
TCGAAAGCGATTCATTGTCGTTCACATGATTTCCTCACCCTACCGTACTA
CAGAAATATATACCAGTATATATATTGCATTGTGCTGTTTATATGTTGGT
TTTCTCTGACTGGGAAGAAGGGCTGCTGGCTTGACATGTCTACCACAGAG
TATCCATCTCTGCAGCATGCCCAAATGTCTTTTCTCATAAAAGGATCGCT
TTCGCTTCATTGTCTCAGTCCTTGTGTACAAGTACGCATTCCTGACTACC
GCGACACCTACAGTACTGTACTATCAATAGTGCTCCACACATGGGATATA
TCATCTACAGGTATATCAGATATATCATTTAGGTCCCATACTTGCCGTTG
TGAAATGTTCGGCAAGATGAGCTGCATCATACAGATCCCACCCGGCAAAC
ATGTGCGCAAGAGCTTTGCCATATAGATCCCACGTGGCAAGCATCCTCTA
CTGCAGATAGTGTATATCGGAGATCTATCTGCCCCGAAGTATCTAGATCG
TGAAATCGGGATCTAATCTGATCTGATATGTCCGATGCATGGCACGGTCC
AACACCATTCCACTCCCCCGAGTGAAACAAGAGTGAAATAAAGAACAAAG
ACCGCCACAGCCACGCTCACGTTGTTTTCGGCCGCATGCATGTAACCGGT
TTTTGCTGCAGGACTTTGGGCGACAGGCGGGGCAGGTGCTGTACAGCGAT
GTCTTCTTCCGCCATGGCCGGCGATGGGGTGAGATGCTACACCCTTTACA
ACATCAGTCATGCTTCGCACTCGTTCATTGTTTTGGAAGCTACTGTAGTT
TTGTGTTTTTTTTTGTATGCTACGCACCTGGATACCACACTATAAGTCGT
GGGGTCTTCTGTGGCTTTTTATGAAAGAAGCGTAACATTGGTCGTCGACG
TAAAAATCAACTATTGACAACTGAGTGTTTTTTTCTCGGTGGCCCGCAAA
AATGAAGCACCGGACCATGATACAGTAAGCAACTCCCCGGGGCAAAACCT
AAGGTCAACAGGAGAGTACAAGGAGACAGTGAGGGTTTGATTCGACATGG
CATATACATAACACCCTTGCACCACTGCAAGCATCATCCGAGTCTATTTC
CACGTAATAAACCGTATGGGACTTCAAGGCATGCCTTCAAGGGGCAAAAC
ATGTCGAAAGCTATTATTAGTAACAATTGATTACGGTTACCATCGGTCAC
AAGAGAGCAGCTCGAGTAGTCCGAGTAGCCCGGGCTGTTGGGGTAGGGCG
CGTGTCCGGAGTGCAACATGGTGAACTTACCGAACTTACCGAGATTTATT
ACCCGCTTTGAAAATTTGAAACTTGACGGCACTTGCATTAAGGCGGCATG
CTTTTTTCTCAGGCGCTCGATTATATCTCGCGGGCCTTGTTTTAAGTCTA
TAATATTTTCACGTTATTCGAACCGAAAAAAGAAGAAAGGGTTGGCAGGT
TGTCCCCGAAACGCTGGTGCAGTTATAATCGTATACGAAGTACTTGAATA
CCAGGTAGTATATGCTGCTATATACGTATGTCGGGGATATTAACGCCTCT
TTTTGCTTGTGCTCATGTGGCCTGTTGGTGTCTCAGGCGTGGTGGAGTAC
CTCTCGCGTGATGACATGAAGGCGGCCATTCGTAACCTGGACGATACGCG
CCTCGGCGGCAAGTACATCCGTGTCAGGGAGGTGAGTTGTCCCTACTGTG
TTTTTTATAACTTGAAAGTACCCAGGAAACTTGTCCCAGATGATACAGAT
TCTACCGACGGCTTCCACGCGTCAACATGAGCTATGATACATAGACCATA
CAAACCAGCAACCTATGTGTCTGCCCTGAAATATCTAGATCGTGAAGTTG
GGGTCCATGATCTAGATCATGAACCGAGAATCGACGATCTAATTATACCT
GTTGAAGGTGTGATGGTTTACAAGGGTGGGTGGGTGTGCGTTGTAGAGCA
GGTATCACTAGTTCGACGCGAAATATGTGAGGCAGCTGAGATAAGCAGCG
AGACGATGCCGCCGCCCGTCGGCCCCACGAAAGGAAGTTGAGCGGCGTGC
GTAGACGGCGGTGTTGTGATTTCGGTGGCCCTTCCTCGTTGATCGGCTGG
GTGTTTTACCACGCGAGGGGAATGCCTCGCCTTTGCGAGCAAGAGCCCCG
CGGTCGTACGGTGATCAAGCGGTACACGTAGACACCGACGATGTGCTCGG
AAGATGGTAGGTATCGCCAATGCAACTATATGATGTATGAGTCGACCATC
AGTTTCGACAAATAGTGTGAACCATGGGCGACTTTTGAGTGTGGGTCGAA
GCGTGATCGGGTGGCCTCGTCTTCCTTTACTCTTGTTTGTGTCTACGCAT
CAATTTTGGCGCTTCAATCCGCCTTGAGGGAAGTTTTTGTTTTTCCTGGT
GGTGTGCGGACAGATGTGTTGCTTTCGTGTTCTGAACAGGGTGCCAGTCT
CAACATAGGGAAATTCGACAAACCTTACTCCTGATGATCCTCATTCTTGT
CCCGTCGCCTTCGTCATTATTTTCCCTGGTTGTTCGCTGCCACGCTTCCT
GTCTCGCTTTTTGCCAACTGCCTTTGTGCCGCCGCCTCCCTCCCCTCCCT
CTCTTTTACGTCGCCTGCTCGTTCACGTTGTACTGCCTTTATTTTCCCTT
ACCCCGACAGGAGAACAACAACCGCGACAGCCGCTCTCGATCCCGCTCTC
GATCCCGCCGCTCGCGCAGCTTCTCTCGCTCTCCCCCCGCCCGCCGGCGT
GAGCGTTCTCCTTCGCCTGAGGTGTACAGGGGGCGGGGAGGAGGAGGCGG
AGGGCGCGGTCGCGACGCTAGCCGCAGCCGCAGCCGCTCTCCTGCTCGTC
ACAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1341:18939..26346+

>mRNA_M-pyrifera_M_contig1341.5952.1 ID=mRNA_M-pyrifera_M_contig1341.5952.1|Name=mRNA_M-pyrifera_M_contig1341.5952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig1341:18939..26346+ (Macrocystis pyrifera P11B4 male)
AACACCCGTGACCGTGACCTGGACCGCGCCTTCAGCAGATATGGACGGAT
CGAGAACACCCGTGACCGTGACCTGGACCGCGCCTTCAGCAGATATGGAC
GGATCGAGAAAATCGACGTGAGGATGGGGTTTGCGTTTATCGAGTACGAG
GACCGCCGCGACGCGGAGGATGCAGTTGCCGAAAATCGACGTGAGGATGG
GGTTTGCGTTTATCGAGTACGAGGACCGCCGCGACGCGGAGGATGCAGTT
GCCGAGATGGACGGCCGCGAGTTCGATGGGGCTCGGGTCGTCGTGCAGCC
CGGGCGTGGCCACCGCCCGAACGGGCCCAAGTACGCGACGCGCCGCACGG
AGCACCGCATCACCGTGGAAGGCCTGGACTCTCACACCAGCTGGCAGGAT
CTCAAGAGATGGACGGCCGCGAGTTCGATGGGGCTCGGGTCGTCGTGCAG
CCCGGGCGTGGCCACCGCCCGAACGGGCCCAAGTACGCGACGCGCCGCAC
GGAGCACCGCATCACCGTGGAAGGCCTGGACTCTCACACCAGCTGGCAGG
ATCTCAAGGACTTTGGGCGACAGGCGGGGCAGGTGCTGTACAGCGATGTC
TTCTTCCGCCATGGCCGGCGATGGGGACTTTGGGCGACAGGCGGGGCAGG
TGCTGTACAGCGATGTCTTCTTCCGCCATGGCCGGCGATGGGGCGTGGTG
GAGTACCTCTCGCGTGATGACATGAAGGCGGCCATTCGTAACCTGGACGA
TACGCGCCTCGGCGGCAAGTACATCCGTGTCAGGGAGGCGTGGTGGAGTA
CCTCTCGCGTGATGACATGAAGGCGGCCATTCGTAACCTGGACGATACGC
GCCTCGGCGGCAAGTACATCCGTGTCAGGGAGGAGAACAACAACCGCGAC
AGCCGCTCTCGATCCCGCTCTCGATCCCGCCGCTCGCGCAGCTTCTCTCG
CTCTCCCCCCGCCCGCCGGCGTGAGCGTTCTCCTTCGCCTGAGGTGTACA
GGGGGCGGGGAGGAGGAGGCGGAGGGCGCGGTCGCGACGCTAGCCGCAGC
CGCAGCCGCTCTCCTGCTCGTCACAGGTGAGAGAACAACAACCGCGACAG
CCGCTCTCGATCCCGCTCTCGATCCCGCCGCTCGCGCAGCTTCTCTCGCT
CTCCCCCCGCCCGCCGGCGTGAGCGTTCTCCTTCGCCTGAGGTGTACAGG
GGGCGGGGAGGAGGAGGCGGAGGGCGCGGTCGCGACGCTAGCCGCAGCCG
CAGCCGCTCTCCTGCTCGTCACAGGTGA
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