prot_M-pyrifera_M_contig1341.5952.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig1341.5952.1
Unique Nameprot_M-pyrifera_M_contig1341.5952.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length213
Homology
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.710e-98
Identity = 141/150 (94.00%), Postives = 147/150 (98.00%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 150
            +TRDRDLDRAF RYGRIEKIDVRMGFAFIE+EDRRDAEDAVAEMDGREFDGAR+VVQPGRGHRPNGPK+ATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFR GRRWGVVEY+SRDDMKAAIR LDDTRLGGKYIRVREEN+
Sbjct:   13 HTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENS 162
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.520e-37
Identity = 62/130 (47.69%), Postives = 95/130 (73.08%), Query Frame = 0 
Query:    2 TRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIR 131
            TR+RDL+R F RYGR+E++D++ GFAF+E+ D RDA+DAV +M GR+ DG R+ V+  +G R  G +   + +  RI VEGLD  TSWQDLKDFGR+ G ++Y+DV+    +++G++EY  ++D + A++
Sbjct:   16 TRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLKDFGRKVGDIMYTDVWVDGSKKFGIMEYGRKEDYEEALK 143
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: T1D6F1_9DIPT (Putative b52 (Fragment) n=1 Tax=Psorophora albipes TaxID=869069 RepID=T1D6F1_9DIPT)

HSP 1 Score: 138 bits (347), Expect = 1.850e-36
Identity = 74/161 (45.96%), Postives = 104/161 (64.60%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG------------HRPNGPKYATR-RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 148
            + R+RDL+R F  YGRI +I ++ G+ F+E+ED RDA+DAV EM+G++  G RV ++P RG             R    +Y    RT+HR+ VE L S  SWQDLKD+ RQAG+V Y+D   R  +  GVVE+ +  +MKAAI+ LDDT L G+ IR++E+
Sbjct:   14 DVRERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRERERRGGRSRYGPPLRTKHRLIVENLSSRISWQDLKDYMRQAGEVTYADAH-RDRKNEGVVEFATSSEMKAAIKQLDDTELNGRRIRLQED 173
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BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A6P7IBI1_9TELE (serine/arginine-rich splicing factor 6-like isoform X1 n=3 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IBI1_9TELE)

HSP 1 Score: 138 bits (347), Expect = 5.650e-36
Identity = 73/166 (43.98%), Postives = 104/166 (62.65%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 150
            + R++D+ R FS YG++ ++D++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  YA R                RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYAGRSSSWNRPGRDKYGPPVRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDINGRKIRLVEDKH 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A7N9ASU1_9TELE (Serine/arginine-rich splicing factor 6-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A7N9ASU1_9TELE)

HSP 1 Score: 135 bits (341), Expect = 7.220e-36
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 148
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RV+++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVIIEHARGPRRDGYGYGGRSGGYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A182HC83_AEDAL (Uncharacterized protein n=4 Tax=Aedini TaxID=1056966 RepID=A0A182HC83_AEDAL)

HSP 1 Score: 137 bits (346), Expect = 1.380e-35
Identity = 73/161 (45.34%), Postives = 102/161 (63.35%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 148
            + R+RDL+R F  YGRI +I ++ G+ F+E+ED RDA+DAV EM+G++  G RV ++P RG          R             RT+HR+ VE L S  SWQDLKD+ RQAG+V Y+D   R  +  GVVE+ +  +MKAAI+ LDDT L G+ IR++E+
Sbjct:   14 DVRERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRDRERRGGRSRFGPPLRTKHRLIVENLSSRISWQDLKDYMRQAGEVTYADAH-RDRKNEGVVEFATASEMKAAIKQLDDTELNGRRIRLQED 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A6A4SRR9_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SRR9_SCOMX)

HSP 1 Score: 133 bits (334), Expect = 1.620e-35
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG--------------------HRPNGPKYAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 150
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG                    +RP   KY    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKS 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A3Q4H868_NEOBR (Serine/arginine-rich splicing factor 6-like n=28 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q4H868_NEOBR)

HSP 1 Score: 136 bits (342), Expect = 2.000e-35
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 148
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYGGRSGGYSSWNRTGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A3Q1AJP8_AMPOC (Serine/arginine-rich splicing factor 6-like n=3 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1AJP8_AMPOC)

HSP 1 Score: 136 bits (342), Expect = 2.140e-35
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRGHRPNGPKYATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREE 148
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG R +G  Y  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+
Sbjct:   12 HVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYGGRSNSYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVED 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Match: A0A8D3DI69_SCOMX (Serine and arginine rich splicing factor 6b n=2 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3DI69_SCOMX)

HSP 1 Score: 133 bits (334), Expect = 2.890e-35
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 0 
Query:    1 NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFDGARVVVQPGRG--------------------HRPNGPKYAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN 150
            + R++D+ R FS YG++ +ID++ G+ F+E+ED RDA+DAV E++G+E  G RVV++  RG                    +RP   KY    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D         GV+E+ SR D+K AI  LD T + G+ IR+ E+ +
Sbjct:   12 HVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKS 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1341.5952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI2.710e-9894.00Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A7S0Q5F1_9EUKA1.520e-3747.69Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
T1D6F1_9DIPT1.850e-3645.96Putative b52 (Fragment) n=1 Tax=Psorophora albipes... [more]
A0A6P7IBI1_9TELE5.650e-3643.98serine/arginine-rich splicing factor 6-like isofor... [more]
A0A7N9ASU1_9TELE7.220e-3643.11Serine/arginine-rich splicing factor 6-like n=2 Ta... [more]
A0A182HC83_AEDAL1.380e-3545.34Uncharacterized protein n=4 Tax=Aedini TaxID=10569... [more]
A0A6A4SRR9_SCOMX1.620e-3542.69Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A3Q4H868_NEOBR2.000e-3543.71Serine/arginine-rich splicing factor 6-like n=28 T... [more]
A0A3Q1AJP8_AMPOC2.140e-3543.71Serine/arginine-rich splicing factor 6-like n=3 Ta... [more]
A0A8D3DI69_SCOMX2.890e-3542.69Serine and arginine rich splicing factor 6b n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 77..146
e-value: 1.2E-9
score: 48.1
coord: 1..57
e-value: 4.7E-6
score: 36.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..54
e-value: 1.3E-12
score: 47.4
coord: 78..144
e-value: 7.8E-10
score: 38.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 76..150
score: 10.787
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..61
score: 13.959
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..72
e-value: 2.4E-16
score: 61.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 75..149
e-value: 4.4E-18
score: 67.0
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 2..209
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..209
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1341contigM-pyrifera_M_contig1341:18939..26346 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1341.5952.1mRNA_M-pyrifera_M_contig1341.5952.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig1341 18939..26346 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig1341.5952.1 ID=prot_M-pyrifera_M_contig1341.5952.1|Name=mRNA_M-pyrifera_M_contig1341.5952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
NTRDRDLDRAFSRYGRIEKIDVRMGFAFIEYEDRRDAEDAVAEMDGREFD
GARVVVQPGRGHRPNGPKYATRRTEHRITVEGLDSHTSWQDLKDFGRQAG
QVLYSDVFFRHGRRWGVVEYLSRDDMKAAIRNLDDTRLGGKYIRVREENN
NRDSRSRSRSRSRRSRSFSRSPPARRRERSPSPEVYRGRGGGGGGRGRDA
SRSRSRSPARHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf