mRNA_M-pyrifera_M_contig13369.5936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13369.5936.1
Unique NamemRNA_M-pyrifera_M_contig13369.5936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13369.5936.1 vs. uniprot
Match: A0A6H5L606_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L606_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.270e-50
Identity = 82/106 (77.36%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:   61 SQEDMFFGALVTLVRNGLTDED-PALKGAYLNSYQRLVGIVVQEVGTRSTPASEMILSSFLAWEREIRKELTEPAWESRPPDLVGSWALEAAGWDGVSDIPADGSA 375
            +QEDMF+ AL+ LV++GLTDE  PAL GAYLNSY+RL+GI+VQEVGTRSTPASEM+L SFLAWEREIRKELTEPAW+SRPPDLVGSWAL+ +GWDG++D+P D SA
Sbjct:  317 TQEDMFYHALINLVKHGLTDEGVPALSGAYLNSYERLMGILVQEVGTRSTPASEMVLKSFLAWEREIRKELTEPAWKSRPPDLVGSWALDTSGWDGLTDLPVDSSA 422
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BLAST of mRNA_M-pyrifera_M_contig13369.5936.1 vs. uniprot
Match: A0A7S2UV57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV57_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.600e-16
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:   58 ESQEDMFFGALVTLVRNG-------LTDEDPA--------LKGAYLNSYQRLVGIVVQEVGTRSTPASEMILSSFLAWEREIRKELTEPAWESRPPDLVGSWALEAAGWDGVSDIP 360
            +SQE +F+ A+++L+R+G       LT +           LKG+YLNS++RLV ++V+ +GT +   S  +L  F  WE ++RK +TEP W++ P +L G W L     D   D P
Sbjct:  133 DSQEKVFYEAMLSLLRDGFDGAKSYLTSDSSLRVHNAVAKLKGSYLNSFERLVSLLVETIGTGAGITSSEVLKGFSTWETQVRKNVTEPRWDALPKELTGPWMLMEG--DAAMDFP 246
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BLAST of mRNA_M-pyrifera_M_contig13369.5936.1 vs. uniprot
Match: A0A6U4GLT9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GLT9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   58 ESQEDMFFGALVTLVRNGLTDEDPALKGAY------LNSYQRLVGIVVQEVGTR---STPASEMILSSFLAWEREIRKELT-EPAWESRPPDLVGSWALEA 330
            ES    F+ ALV L  +G+       + +Y       NS QR++G++VQE+G R   S    + I + F+ WE E+R+ +T    W+  P DL G+W L A
Sbjct:  277 ESDIAWFYDALVDLCESGMATAVALEESSYGRAFCWANSMQRILGLLVQEMGLRLEGSETLEDPIFTRFVNWESELRQNITGNYGWDPTPKDLEGTWCLGA 377
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BLAST of mRNA_M-pyrifera_M_contig13369.5936.1 vs. uniprot
Match: A0A7R9UG48_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG48_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.390e-7
Identity = 32/102 (31.37%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   55 NESQEDMFFGALVTLVRNGLT----DEDPALKGAYL--NSYQRLVGIVVQEVGTRSTPASEM---ILSSFLAWEREIRKELTEP-AWESRPPDLVGSWALEA 330
             ES    F+ A++ L   G+      E+ A   ++   N+ QRL+G++VQE+G R   A  +   I + F++WE ++R+ +T    W   P DL G+W+L +
Sbjct:  261 TESDSVWFYDAMIDLCETGMATAIAQEEAARARSFCWANALQRLLGLLVQEMGLRLEGAESIEDPIFTRFVSWESQLRRNITSNYGWNKHPRDLQGTWSLSS 362
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13369.5936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L606_9PHAE4.270e-5077.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UV57_9STRA4.600e-1636.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4GLT9_9STRA1.350e-734.65Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UG48_9STRA3.390e-731.37Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13369contigM-pyrifera_M_contig13369:2990..4764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue4.9e-42
Seed eggNOG ortholog2880.D7FNI2
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E0RS@1,2S85K@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005350.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size382
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13369.5936.1prot_M-pyrifera_M_contig13369.5936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13369 2990..4764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.1321523-CDS-M-pyrifera_M_contig13369:2989..31511622815815.1321523-CDS-M-pyrifera_M_contig13369:2989..3151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 2990..3151 +
1692277584.3325052-CDS-M-pyrifera_M_contig13369:2989..31511692277584.3325052-CDS-M-pyrifera_M_contig13369:2989..3151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 2990..3151 +
1622815815.1419032-CDS-M-pyrifera_M_contig13369:3650..37761622815815.1419032-CDS-M-pyrifera_M_contig13369:3650..3776Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 3651..3776 +
1692277584.352037-CDS-M-pyrifera_M_contig13369:3650..37761692277584.352037-CDS-M-pyrifera_M_contig13369:3650..3776Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 3651..3776 +
1622815815.1514702-CDS-M-pyrifera_M_contig13369:4671..47641622815815.1514702-CDS-M-pyrifera_M_contig13369:4671..4764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 4672..4764 +
1692277584.3673177-CDS-M-pyrifera_M_contig13369:4671..47641692277584.3673177-CDS-M-pyrifera_M_contig13369:4671..4764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13369 4672..4764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13369.5936.1

>prot_M-pyrifera_M_contig13369.5936.1 ID=prot_M-pyrifera_M_contig13369.5936.1|Name=mRNA_M-pyrifera_M_contig13369.5936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MLWYAVVCCGIAVVCCAMNESQEDMFFGALVTLVRNGLTDEDPALKGAYL
NSYQRLVGIVVQEVGTRSTPASEMILSSFLAWEREIRKELTEPAWESRPP
DLVGSWALEAAGWDGVSDIPADGSAME
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mRNA from alignment at M-pyrifera_M_contig13369:2990..4764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13369.5936.1 ID=mRNA_M-pyrifera_M_contig13369.5936.1|Name=mRNA_M-pyrifera_M_contig13369.5936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1775bp|location=Sequence derived from alignment at M-pyrifera_M_contig13369:2990..4764+ (Macrocystis pyrifera P11B4 male)
ATGCTGTGGTATGCTGTGGTGTGCTGTGGTATTGCCGTGGTATGTTGTGC
TATGAATGAATCTCAGGAGGATATGTTTTTTGGCGCCCTGGTGACCCTCG
TGAGGAACGGGCTGACCGACGAGGATCCCGCGCTGAAGGGAGCCTACCTC
AACTCTTACCAGGTGGGGGGTAGCGAAGAGGGGTGGACCAGATGGTGTGT
TGCTGGTGTGGTGGTAGTGTGGTGGGGCGGGATGTCAGTGCTCTGCATCG
TAGTGGTGGTGCGATAGGAGCTGTGCTCCCGTGATCTCGCCACGTAGAGG
GAGTCCTCGACTGCTAACACAACGTTGTAGAAAGTCGTGCTGCAACTTCA
TACCAGGTAGTTGTCAAGAGGTATGATCGTTGCTGGCGTTTTTTTTTTGT
GTTGTCTCGCCTTTCGGGAGGTGGGTCGGGGGTGGGTGTTGGGGGTTGCG
AGTCAGAAAAGTTGTATGAAGCCAGGCGCTAAAAAGGTGGAAATCCTTGG
TGGTTTGTTTGCCTGCGACCCTTCTGGAAGTGGGAAAGCTGCTTCAGCTG
AGAGATCGAAAACTTTCATGTATGGGACTTTTTTTTGTTTTTGGTTGTCA
ATGATGCCTTACCCCCCCCCCGTCCTCCTCCCCCCCCCTCGCCCCGCCCC
TTCTTGCGTAGAGGTTGGTGGGTATTGTTGTGCAGGAAGTGGGGACTCGG
AGCACTCCGGCGAGCGAGATGATTCTCTCGAGCTTCCTCGCGTGGGAGCG
AGAGATCCGGAAGGAGCTCACGGAGCCGGCGTGGGAGGTGGGTGTTTGTT
GCAGTTGGTGTACAACACTGTACGGTAGGTATGCAGTAGGCGTACAACAC
AACAAGGTAGGTTGTACGGCAGGTATGCAGTAGGCGTACAGCACAGTACG
GCAGATTGTACGGCAGGTGTACAGCAGTAGGTGTACATGTACAACACTTT
ACGGTAGGGATCCGGTAGGTGTACAGTAGGTATACATATACAACACTGTA
CGGTAGAGATGCAGTAGGTGTACAGTAGGTGTACAACACCGTACGTTAAG
TATGCAGTAGGCTTTCAGCAGAAGGTGTGCAGGCTATGTAGCTGTACAGC
AGTAGGTGTACATTGTGTTTGTGAGTGGATGCACGGTAGGTGCCCGGTGG
GTTTTGCAGTAGGCGCGCAGTAGGTGCACAGTAGGCGTATACCGTGGGTG
TACCTTGCAATATGTAAGAGTTGCCCAGACAGGAGGGTAGATGGAAAGTG
CGGCCGTGAGGCAGATGGTTCGAAGCCGGTGCCATCGCTGCTGTTTTTTG
TGTTTCGTATTGGGTGTTTTGGTGTTTTGTGGTATGTGTTTTGTGTTCGT
GTGTGCTGTGTTTCGTGTTCTGTGTTGTGTGTTCTGAGGTTTGTGTTATG
TGTCACGCGTTCCGTGTTGTCCGATGTGTTGTGTTTCGTAAGTGCGCCTC
CTTGAGTGAAACCCTAGTCGTGCCCTCGGGGCCTACACGCACGCAGACCG
GTAGTAGCGTTGGCGTTGCCGTTGCAGCGCTGATCGTTAGCAACGATCCG
CACCTCGCGCTCGCCCGGCATCCCGCGCGCGTTTGTCTGAAACCAAAGCT
CTCAACTTAGTAAACGATCCCCCCCCCCCTCCCCTATTCTCCCTCTCCTC
TCTCTCTCCCCCCCCTCCTCCGGCGGGCGCAGTCGAGGCCGCCGGACTTG
GTTGGATCTTGGGCGCTGGAGGCGGCCGGCTGGGACGGAGTCTCTGACAT
CCCGGCCGATGGATCGGCGATGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13369:2990..4764+

>mRNA_M-pyrifera_M_contig13369.5936.1 ID=mRNA_M-pyrifera_M_contig13369.5936.1|Name=mRNA_M-pyrifera_M_contig13369.5936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig13369:2990..4764+ (Macrocystis pyrifera P11B4 male)
ATGCTGTGGTATGCTGTGGTGTGCTGTGGTATTGCCGTGGTATGTTGTGC
TATGAATGAATCTCAGGAGGATATGTTTTTTGGCGCCCTGGTGACCCTCG
TGAGGAACGGGCTGACCGACGAGGATCCCGCGCTGAAGGGAGCCTACCTC
AACTCTTACCAGATGCTGTGGTATGCTGTGGTGTGCTGTGGTATTGCCGT
GGTATGTTGTGCTATGAATGAATCTCAGGAGGATATGTTTTTTGGCGCCC
TGGTGACCCTCGTGAGGAACGGGCTGACCGACGAGGATCCCGCGCTGAAG
GGAGCCTACCTCAACTCTTACCAGAGGTTGGTGGGTATTGTTGTGCAGGA
AGTGGGGACTCGGAGCACTCCGGCGAGCGAGATGATTCTCTCGAGCTTCC
TCGCGTGGGAGCGAGAGATCCGGAAGGAGCTCACGGAGCCGGCGTGGGAG
AGGTTGGTGGGTATTGTTGTGCAGGAAGTGGGGACTCGGAGCACTCCGGC
GAGCGAGATGATTCTCTCGAGCTTCCTCGCGTGGGAGCGAGAGATCCGGA
AGGAGCTCACGGAGCCGGCGTGGGAGTCGAGGCCGCCGGACTTGGTTGGA
TCTTGGGCGCTGGAGGCGGCCGGCTGGGACGGAGTCTCTGACATCCCGGC
CGATGGATCGGCGATGGAATCGAGGCCGCCGGACTTGGTTGGATCTTGGG
CGCTGGAGGCGGCCGGCTGGGACGGAGTCTCTGACATCCCGGCCGATGGA
TCGGCGATGGAA
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