mRNA_M-pyrifera_M_contig13339.5924.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13339.5924.1
Unique NamemRNA_M-pyrifera_M_contig13339.5924.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13339.5924.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.070e-78
Identity = 161/317 (50.79%), Postives = 196/317 (61.83%), Query Frame = 1 
Query:    1 QSATATPSTFSATVFPDGSLRYRFMRIGDKADWTVGVTGNSFVSPTIRNRNVRQAEIVVLDKDGLPAAPSVPAPLPYPLSSAPDAPGPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDRTTDGHQQRQEEADGPGTEATLCRVPTVACLGSACGKAGSEVAVLWEGFACQAAAASLALSFACRFGGLEVPAVRLEDAEGSRAEAAVAAAERGEWARGWGKRKKKTWGPGWVGQEGGAGGQGGGLLCRVPRLGWVEEGHEQAVMVPVEVVWFLTGQQASESSQGQVARSAVDVGVRGLSVTGDAGLVSSHVLAFR 951
            +SA+ATPSTFS TVFPDGSLRYR+MRIGDKADWT GV+GNSFVSPTIRNR+VRQ++ + +D++GLP+A    A  P   S+ P  P                                      +G    +E+AD   TE TLCR PT+ACL  ACGKAGSEV VLWEG  C+AAA SL ++F+CR GGLEVPAV L              +  G WA G+   +++ WGP W G E      GGGL+C VPRL W E G E+AVMVPVEV+W L  +QAS+ ++ QV   A  V V GLSV GDAGL++SHVLAFR
Sbjct:  141 RSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSA----AAPPEAFSATPTLPPSPGAPVSTASNSSDSTSGDDSSEVQQWGEGEAVTIIANGDGAEEEDAD---TEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAA-SLNVTFSCRIGGLEVPAVGLGGE--------TTTSSSGSWAGGF---EEEAWGPYWAGGE-----VGGGLVCEVPRLEWAEAGQEEAVMVPVEVLWSLP-EQASDRAKEQVRLGAAGVAVHGLSVLGDAGLINSHVLAFR 432
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BLAST of mRNA_M-pyrifera_M_contig13339.5924.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.200e-77
Identity = 179/319 (56.11%), Postives = 214/319 (67.08%), Query Frame = 1 
Query:    1 QSATATPSTFSATVFPDGSLRYRFMRIGDKADWTVGVTGNSFVSPTIRNRNVRQAEIVVLDKDGLP--AAPSVPAPLPYPLSSAPDAPGPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDRTTDGHQQRQEEADGPGTEATLCRVPTVACLGSACGKAGSEVAVLWEGFACQAAAASLALSFACRFGGLEVPAVRLEDAEGSRAEAAVAAAERGEWARGWGKRKKKTWGPGWVGQEGGAGGQGGGLLCRVPRLGWVEEGHEQAVMVPVEVVWFLTGQQASESSQGQVARSAVDVGVRGLSVTGDAGLVSSHVLAFR 951
            +SA+ATPSTFS TVFPDGSLRYR+MRIGDKADWT GV+GNSFVSPTIRNR+VRQ++ + +D++GLP  AAPS         S+ P       XXXXXXXXXXXXXXX                   +G    +E+ D   TE TLCR PT+ACL  ACGKAGSEV VLWEG  C+AAA SL ++F+CR GGLEVPAV LE            A+  G  A G+   +++ WGP WVG EGG     GGL+C VPRL W E G ++AVMVPVEV+W L  +QAS+S++ QV   A  VGV GLSV GDAGL++SHVLAFR
Sbjct:  656 RSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAAAPS------EAFSATPTXXXXXXXXXXXXXXXXXXXXXDDASEVQGEGGGSAVTIIANGDGAEEEDGD---TEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAA-SLNVTFSCRIGGLEVPAVSLEGG--------ATASSSGSLAGGF---EEEAWGPDWVGGEGG-----GGLVCEVPRLEWAEAGQDEAVMVPVEVLWSLP-EQASDSAKEQVRLGAAGVGVHGLSVLGDAGLINSHVLAFR 947
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13339.5924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLL6_9PHAE1.070e-7850.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FI05_ECTSI1.200e-7756.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13339contigM-pyrifera_M_contig13339:5328..8514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue1.1e-69
Seed eggNOG ortholog2880.D7FI05
KEGG koko:K19037
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons4
Model size954
Cds size954
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13339.5924.1prot_M-pyrifera_M_contig13339.5924.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13339 5328..8514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.3336666-CDS-M-pyrifera_M_contig13339:5327..54471622815814.3336666-CDS-M-pyrifera_M_contig13339:5327..5447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 5328..5447 -
1692277583.8695014-CDS-M-pyrifera_M_contig13339:5327..54471692277583.8695014-CDS-M-pyrifera_M_contig13339:5327..5447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 5328..5447 -
1622815814.3489673-CDS-M-pyrifera_M_contig13339:7017..75401622815814.3489673-CDS-M-pyrifera_M_contig13339:7017..7540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 7018..7540 -
1692277583.8816078-CDS-M-pyrifera_M_contig13339:7017..75401692277583.8816078-CDS-M-pyrifera_M_contig13339:7017..7540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 7018..7540 -
1622815814.359119-CDS-M-pyrifera_M_contig13339:7828..79961622815814.359119-CDS-M-pyrifera_M_contig13339:7828..7996Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 7829..7996 -
1692277583.8984303-CDS-M-pyrifera_M_contig13339:7828..79961692277583.8984303-CDS-M-pyrifera_M_contig13339:7828..7996Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 7829..7996 -
1622815814.3732772-CDS-M-pyrifera_M_contig13339:8371..85141622815814.3732772-CDS-M-pyrifera_M_contig13339:8371..8514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 8372..8514 -
1692277583.9079416-CDS-M-pyrifera_M_contig13339:8371..85141692277583.9079416-CDS-M-pyrifera_M_contig13339:8371..8514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 8372..8514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13339.5924.1

>prot_M-pyrifera_M_contig13339.5924.1 ID=prot_M-pyrifera_M_contig13339.5924.1|Name=mRNA_M-pyrifera_M_contig13339.5924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=318bp
QSATATPSTFSATVFPDGSLRYRFMRIGDKADWTVGVTGNSFVSPTIRNR
NVRQAEIVVLDKDGLPAAPSVPAPLPYPLSSAPDAPGPTSTTSTSSSSTS
SSSSSSSGGGGGSSGSSSFSDRTTDGHQQRQEEADGPGTEATLCRVPTVA
CLGSACGKAGSEVAVLWEGFACQAAAASLALSFACRFGGLEVPAVRLEDA
EGSRAEAAVAAAERGEWARGWGKRKKKTWGPGWVGQEGGAGGQGGGLLCR
VPRLGWVEEGHEQAVMVPVEVVWFLTGQQASESSQGQVARSAVDVGVRGL
SVTGDAGLVSSHVLAFR*
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mRNA from alignment at M-pyrifera_M_contig13339:5328..8514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13339.5924.1 ID=mRNA_M-pyrifera_M_contig13339.5924.1|Name=mRNA_M-pyrifera_M_contig13339.5924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3187bp|location=Sequence derived from alignment at M-pyrifera_M_contig13339:5328..8514- (Macrocystis pyrifera P11B4 male)
CAGTCAGCGACGGCGACACCCTCGACGTTTTCGGCCACGGTTTTCCCAGA
CGGCTCGCTGCGGTACCGCTTCATGCGCATCGGGGATAAGGCCGACTGGA
CGGTGGGCGTCACGGGGAACTCGTTCGTCTCTCCGACCATCAGGTTGGGG
CGGTTGCTTGTCGTCGCGGAATTTCCTTGAGCAGCTACCAGTCTTACACC
TCGTACGTTCTATGAATATGCCGTGATTATGCCGAGCATGGTCTGTCCGT
GGCTGTGTTGCCTGGACGACAACTCCTCTCTTCTCCCCCCGTGTCTCCCT
CTTCCTTCCCCCCTCTCCCTCGTCACCCCTCCCCCACCATCCCTCCCCAC
TCCCTTTCCCCCACTACCCCTCCCCCATCCCCTCTTCCCCCCCCCCTCCG
CGCTACCCCTCCCCGCCCCCCCAATCTCTCTCCTCAGTTTTACCTTTTTT
CATCCCCCTTCCCCCATCCCCCATCCCGTCTCCCGCGAAACCCCCTCCCC
CGCTACGTTTCACGGCAGAAATCGCAACGTACGCCAAGCGGAGATCGTCG
TATTGGACAAGGACGGCCTGCCAGCGGCGCCGTCGGTGCCCGCCCCCCTC
CCCTACCCGCTGTCCTCTGCTCCGGACGCCCCAGGCCCCACCTCCACCAC
CTCCACCTCCTCCTCCTCCACCTCCTCCTCCTCCTCGTCCTCCTCCTCCT
CCTCCAGCCATGTCGGCAAGGGAGACTACGCTGGACGTGGTGGTGGTGGA
GGTGTTGGTGGTAGGACAAGCGCAGGGCAGGGAGGCGATTCTTCGGTGGC
TTCGACGACGACGACAGTCACCGCCACGGCTGCCAGTGACGATGGCCATG
GCAGCGAAGATAGTGTTGGCGGCGACGGTGATGTTGATGGTGGTGGTGGC
GGTGGCGGCGGCGAGAAGGGAGAGGAGGGCGATGGCAAGGAGGAGGGGGG
GACTGATACTGACAACGTTGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCA
GCAGCGGCAGCAGCAGCTTCAGCGACAGAACCACCGACGGACACCAGCAG
CGGCAGGAAGAGGCCGACGGCCCCGGCACCGAGGCAACCCTCTGCCGGGT
CCCCACAGTGGCGTGCCTCGGCAGCGCCTGCGGTAAGGCCGGGAGCGAGG
TAGCCGTGCTCTGGGAAGGCTTCGCCTGCCAGGCGGCAGCGGCGTCCCTT
GCCCTATCCTTCGCCTGCCGGTTCGGCGGCCTGGAAGTACCGGCTGTCAG
ACTCGAGGATGCGGAAGGTTCGCGGGCGGAGGCGGCGGTGGCGGCGGCGG
AGAGGGGGGAGTGGGCGCGGGGGTGGGGGAAGAGGAAAAAGAAGACCTGG
GGGCCGGGGTGGGTCGGGCAAGAGGGGGGCGCGGGGGGGCAGGGGGGAGG
CTTGCTCTGCAGAGTGCCGAGGCTGGGGTGGGTGGAGGAGGGGCACGAGC
AGGCGGTGATGGTCCCGGTAGAAGTGGTGTGGTTCTTGACTGGGCAGGTA
TGTATGGATGGATGTATTGTGCGGGGATTTTTTCGGAGGCCGGTTGGCAG
GAGGGGGGAGGGGTGAACAGGAGGGAAGGGAGGAGGAGAGAGGAGGGGGG
AGGGGGGAGCGGGGGGGGGAGGTACTCATTATCGTTCATGGCCGCAGTCG
TATGACCATAGACCCTCACATCCCTACACTGCCGGGACGGAGCACGCCGG
GTTTTCACCGACCAGCCAGACATTGCTTGCACCAAGCGCGAAGCGAAACG
TGAGGTATTTGTTGGGCGAGTCGCATGAAGCGTGAGCTGCATCCTACTGA
GAACCGCTTTAGAGGCGGATTTTCTTGCACATGGATGACAGCATCAATGA
ATTGATTTAATTTCTGATGCGGCCACTTCCAGAGACAGCAATAGGTTTAC
TATGTAACTGCCTCGTGAGTGCCTCACCCTATACACACTACGTGATAGGA
TTATCCCCCTTGTGCGGAGTAAAAGTTCTTCACCTCGTAAAAAAATGATC
TAACTTGACCGCCAGCCGTGGTAACGGCCGAAAAAAAAAAACAAAAAAAA
ACGGTACGAACCCTGGCTGTCTAGCTCACGCAGTGAGAGGCGTGTTTTAC
AGAGTCGTCGCCAACCGACGCCAACCCGACCTATATATATACCAGGTATA
TAATATAGGGGGGGGGGGAGGAGAGAGGGATATCGTTATATTTTTTACCG
CAGACTTTTGAGGACAAGAGCAAGGTGTTTTTGCGCGTCGCACCCTAGTC
GTGCACCCTCTCCACAAGACCAGGGAGTTCGTATATATAAAAGCAAAAAC
GTAGAAAACGTCCGTCACATTTTGTGGCTGCCGTGCGCGGCCTCACTTTT
GGTTTATGGCGCCTCCTCTATGGGTATGCATACCGCAGCTCGAGCGGCGA
ACGCCCTCAGAATCCTTGAAGGCGCCAGCCCTTCTAGGGTGGGGGCGGTG
GCAAGGACTGGTGATACGATTTCCGAGCGCACTCTCGAAAGTTTCACCCT
CTGAAAAGAAAAAGAATGAGAAAAAAAGCTGGGATGGGAACGCGCCCACG
CGCTGTTGTCTTAAGTCGCCGCCGCCGTGCAGCCGGCAGCGTTGTTCCAA
CCGCTCCCGCCACCTTTTTTCGCCCCTCTCCCCCCCCCCCCTCACCCCCG
TTCTCTTCCCTCGCACCCCCTCCCCTCTTTTGATCGAGGTCAAACGAGGA
CACCCACCTGACCACCTGACATGTCAACCCCCCCCCCCCCGACTCCCCCT
GCCTCTTCTGTGATGTGGACCCCCCCTCCCCCTTTTTATTGCGTGGTTGG
ACGCCCCCCCCCTCCCCATCTCTATGCGGATGGACCCCCCCCCCTGCCTG
CCTGCCTGGTCGGTGGAAACCCGACGTGCTCCGTCTCTGCATTGTAGCGA
TGCGAGGGTCTATGATCGTACGACTACGGCCATGCATGACATGAGTACCT
CCCCGCCCCATGGCTCCGTGTCGAAAGGGATGCGTGGTCAATCGCATTAC
TTAAGGCGAGAAATAAATGAGTATGCCCCCCCCCCCGCCTCCCCCCGATA
CTCCGCGCGGTTGGGAGCAGGCGAGCGAGAGCAGTCAGGGGCAGGTGGCC
CGCTCGGCCGTCGATGTCGGTGTCCGCGGATTGTCCGTTACTGGCGACGC
GGGCCTTGTCAGCAGCCACGTCTTGGCCTTCAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13339:5328..8514-

>mRNA_M-pyrifera_M_contig13339.5924.1 ID=mRNA_M-pyrifera_M_contig13339.5924.1|Name=mRNA_M-pyrifera_M_contig13339.5924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1908bp|location=Sequence derived from alignment at M-pyrifera_M_contig13339:5328..8514- (Macrocystis pyrifera P11B4 male)
CAGTCAGCGACGGCGACACCCTCGACGTTTTCGGCCACGGTTTTCCCAGA
CGGCTCGCTGCGGTACCGCTTCATGCGCATCGGGGATAAGGCCGACTGGA
CGGTGGGCGTCACGGGGAACTCGTTCGTCTCTCCGACCATCAGCAGTCAG
CGACGGCGACACCCTCGACGTTTTCGGCCACGGTTTTCCCAGACGGCTCG
CTGCGGTACCGCTTCATGCGCATCGGGGATAAGGCCGACTGGACGGTGGG
CGTCACGGGGAACTCGTTCGTCTCTCCGACCATCAGAAATCGCAACGTAC
GCCAAGCGGAGATCGTCGTATTGGACAAGGACGGCCTGCCAGCGGCGCCG
TCGGTGCCCGCCCCCCTCCCCTACCCGCTGTCCTCTGCTCCGGACGCCCC
AGGCCCCACCTCCACCACCTCCACCTCCTCCTCCTCCACCTCCTCCTCCT
CCTCAAATCGCAACGTACGCCAAGCGGAGATCGTCGTATTGGACAAGGAC
GGCCTGCCAGCGGCGCCGTCGGTGCCCGCCCCCCTCCCCTACCCGCTGTC
CTCTGCTCCGGACGCCCCAGGCCCCACCTCCACCACCTCCACCTCCTCCT
CCTCCACCTCCTCCTCCTCCTCCAGCAGCAGCGGCGGCGGCGGCGGCAGC
AGCGGCAGCAGCAGCTTCAGCGACAGAACCACCGACGGACACCAGCAGCG
GCAGGAAGAGGCCGACGGCCCCGGCACCGAGGCAACCCTCTGCCGGGTCC
CCACAGTGGCGTGCCTCGGCAGCGCCTGCGGTAAGGCCGGGAGCGAGGTA
GCCGTGCTCTGGGAAGGCTTCGCCTGCCAGGCGGCAGCGGCGTCCCTTGC
CCTATCCTTCGCCTGCCGGTTCGGCGGCCTGGAAGTACCGGCTGTCAGAC
TCGAGGATGCGGAAGGTTCGCGGGCGGAGGCGGCGGTGGCGGCGGCGGAG
AGGGGGGAGTGGGCGCGGGGGTGGGGGAAGAGGAAAAAGAAGACCTGGGG
GCCGGGGTGGGTCGGGCAAGAGGGGGGCGCGGGGGGGCAGGGGGGAGGCT
TGCTCTGCAGAGTGCCGAGGCTGGGGTGGGTGGAGGAGGGGCACGAGCAG
GCGGTGATGGTCCCGGTAGAAGTGGTGTGGTTCTTGACTGGGCAGCAGCA
GCAGCGGCGGCGGCGGCGGCAGCAGCGGCAGCAGCAGCTTCAGCGACAGA
ACCACCGACGGACACCAGCAGCGGCAGGAAGAGGCCGACGGCCCCGGCAC
CGAGGCAACCCTCTGCCGGGTCCCCACAGTGGCGTGCCTCGGCAGCGCCT
GCGGTAAGGCCGGGAGCGAGGTAGCCGTGCTCTGGGAAGGCTTCGCCTGC
CAGGCGGCAGCGGCGTCCCTTGCCCTATCCTTCGCCTGCCGGTTCGGCGG
CCTGGAAGTACCGGCTGTCAGACTCGAGGATGCGGAAGGTTCGCGGGCGG
AGGCGGCGGTGGCGGCGGCGGAGAGGGGGGAGTGGGCGCGGGGGTGGGGG
AAGAGGAAAAAGAAGACCTGGGGGCCGGGGTGGGTCGGGCAAGAGGGGGG
CGCGGGGGGGCAGGGGGGAGGCTTGCTCTGCAGAGTGCCGAGGCTGGGGT
GGGTGGAGGAGGGGCACGAGCAGGCGGTGATGGTCCCGGTAGAAGTGGTG
TGGTTCTTGACTGGGCAGCAGGCGAGCGAGAGCAGTCAGGGGCAGGTGGC
CCGCTCGGCCGTCGATGTCGGTGTCCGCGGATTGTCCGTTACTGGCGACG
CGGGCCTTGTCAGCAGCCACGTCTTGGCCTTCAGGTAACAGGCGAGCGAG
AGCAGTCAGGGGCAGGTGGCCCGCTCGGCCGTCGATGTCGGTGTCCGCGG
ATTGTCCGTTACTGGCGACGCGGGCCTTGTCAGCAGCCACGTCTTGGCCT
TCAGGTAA
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