mRNA_M-pyrifera_M_contig13217.5884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13217.5884.1
Unique NamemRNA_M-pyrifera_M_contig13217.5884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A6H5KSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 5.940e-66
Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 1 
Query:    1 DEREQLAMCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIRATPSDPRPLSLAVPCLRSR 366
            DEREQLAMCVF PG  PP+YVSVWL LDDCDAVNGCLEVYPQA N+ R Q+P +EDDA+VVCLPAKAGDAVVFLSNLWHRSGPN+T+  RRVFYAQY +D IRA PSDPRPLSLAVPC+ SR
Sbjct:  205 DEREQLAMCVFAPGAGPPVYVSVWLALDDCDAVNGCLEVYPQARNQTRQQTPSEEDDASVVCLPAKAGDAVVFLSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSR 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: D7FYI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.050e-61
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:   22 MCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIRATPSDPRPLSLAVPCLRSR 366
            MCVF PG  PP+YVSVWL LDDCDAVNGCLEVYPQA ++ R Q+P +EDDA VVCLPAKAGDAVVFLSNLWHRSGPN+T+  RRVFYAQY +D IRA PSDPRPLSLAVPC+ SR
Sbjct:    1 MCVFAPGARPPVYVSVWLALDDCDAVNGCLEVYPQARDQTRQQTPSEEDDACVVCLPAKAGDAVVFLSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSR 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: H3GIQ3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIQ3_PHYRM)

HSP 1 Score: 97.4 bits (241), Expect = 5.370e-22
Identity = 56/130 (43.08%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:    1 DEREQLAMCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDDANVVCL--------PAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIRATPSDPRPLSLAVPCLRSR 366
            D+ EQLAMCV    + P  YVS W  LDD  + NG L+          L   GD  +  V  L        PAKAGD + FLSN+WH S  N ++  RR FYAQYS + I A P +  PLS A+PC   R
Sbjct:  156 DDDEQLAMCVDRETIRP--YVSAWCALDDVSSANGALQFVS-------LDESGDLGEETVEKLQLRACAPVPAKAGDVLFFLSNVWHCSSSNESDAPRRAFYAQYSSEKITARPKEVTPLSFAIPCNSKR 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A7R9TJ11_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJ11_MICPS)

HSP 1 Score: 80.5 bits (197), Expect = 2.930e-15
Identity = 45/102 (44.12%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    1 DEREQLAMCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVI 306
            D  EQLA+    P      YVS+W  LD  D  NG L + P           G       V + A+AGD V+F S+LWH SGPNR+ R RRVFYAQYS + I
Sbjct:  301 DANEQLALLP-NPDARKQKYVSLWCPLDAVDERNGSLVLRPSERPSHHDDGSGRARGRKDVTVRAEAGDVVIFSSDLWHASGPNRSRRERRVFYAQYSGEPI 401
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: C1N1N3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N1N3_MICPC)

HSP 1 Score: 78.6 bits (192), Expect = 1.430e-14
Identity = 43/97 (44.33%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:    1 DEREQLAMCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQY 291
            D  EQLA+    P      YVS+W  LD  D  NG L + P           G       V + A+AGD V+F S+LWH SGPNR+ R RRVFYAQY
Sbjct:  314 DANEQLALLP-NPDARKQKYVSLWCPLDAVDERNGSLVLRPSERPSHHDDGSGRARGRKDVTVRAEAGDVVIFSSDLWHASGPNRSRRERRVFYAQY 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A7Y2DMU4_9ACTN (Phytanoyl-CoA dioxygenase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DMU4_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 4.340e-11
Identity = 36/97 (37.11%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:   58 YVSVWLTLDDCDAVNGCLEVYPQAW--------------NRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVI 306
            Y+S+W+++D     NGC+ V P++               N+ R+   GD+    V C P   G  V F S   HRSGPN T+RARR +  QYSV+ I
Sbjct:  126 YLSLWISIDAATEANGCVPVLPRSLDGSARVVPHRFDPVNKERVGYDGDDPGIAVECPP---GSIVAFSSLTMHRSGPNTTDRARRAYLCQYSVEPI 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A6L7KQH9_9RHOB (Phytanoyl-CoA dioxygenase family protein n=1 Tax=Boseongicola sp. SB0667_bin_21 TaxID=2604846 RepID=A0A6L7KQH9_9RHOB)

HSP 1 Score: 67.4 bits (163), Expect = 5.120e-11
Identity = 38/98 (38.78%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   58 YVSVWLTLDDCDAVNGCLEVYPQ-----------AWNRPRLQSPG---DEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIR 309
            Y++VW+ LDD    NGC+ + P+            W     +  G   D+    +VC    AG  V F S   HRSGPNRT+R RR + AQYSV+ IR
Sbjct:  137 YLTVWIALDDTTEENGCVYLLPRDLETDPGIDEHEWQEDSKELNGYFGDDPGRPMVC---PAGTVVAFSSRTLHRSGPNRTDRPRRAYIAQYSVEPIR 231
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A239JF92_9PROT (Phytanoyl-CoA dioxygenase (PhyH) n=1 Tax=Azospirillum sp. RU38E TaxID=1907313 RepID=A0A239JF92_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 7.500e-11
Identity = 46/124 (37.10%), Postives = 60/124 (48.39%), Query Frame = 1 
Query:   37 PGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNR---------PRLQSPGDED------DANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIRATPSDPRPLSLAVPCLRS 363
            P  + P Y++ W  LDD    NG + + P  ++R         P L+ PG  D      D   V + A AG  V F S L H SGPN ++R RRV+ AQYS +VI   P        A+P LRS
Sbjct:  128 PADHAP-YLTCWCPLDDATLENGTIRLLP--FSRVPASRDGILPHLRQPGTNDLVGWTGDDQGVVIEAPAGSVVAFSSRLLHASGPNHSDRMRRVYLAQYSPEVI-LNPGTRHLRRDAIPLLRS 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: A0A6L7LI54_9RHOB (Phytanoyl-CoA dioxygenase family protein n=6 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7LI54_9RHOB)

HSP 1 Score: 65.9 bits (159), Expect = 1.950e-10
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:   58 YVSVWLTLDDCDAVNGCLEVYPQ-----------AWNRPRLQSPG---DEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIR 309
            Y++VW+ LDD    NGC+ + P+            W     +  G   D+    +VC    AG  V F S   HRSGPN T+R RR + AQYSV+ IR
Sbjct:  139 YLTVWMALDDTTEENGCVHLLPRNLATDPGIDAHEWQEDSKELNGYFGDDPGQPMVC---PAGSVVAFSSRTLHRSGPNGTDRPRRAYIAQYSVEPIR 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Match: UPI0004180353 (phytanoyl-CoA dioxygenase family protein n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004180353)

HSP 1 Score: 65.9 bits (159), Expect = 3.150e-10
Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   34 PPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQA--WNRPRLQSPGDEDDANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYS 294
            P   +P +  +VWL LDD  A NG   V P +  + +    S G  DD  V+  PA  G   ++LSN WHRSGPN T+R RR     Y+
Sbjct:  189 PLPEFPLMVQNVWL-LDDFTAHNGATRVVPGSHRFRKAPPWSEGQRDDERVLTAPA--GSVAIWLSNTWHRSGPNETDRPRRAILCNYN 274
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13217.5884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSK1_9PHAE5.940e-6681.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYI8_ECTSI1.050e-6179.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3GIQ3_PHYRM5.370e-2243.08Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7R9TJ11_MICPS2.930e-1544.12Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1N1N3_MICPC1.430e-1444.33Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7Y2DMU4_9ACTN4.340e-1137.11Phytanoyl-CoA dioxygenase family protein n=1 Tax=A... [more]
A0A6L7KQH9_9RHOB5.120e-1138.78Phytanoyl-CoA dioxygenase family protein n=1 Tax=B... [more]
A0A239JF92_9PROT7.500e-1137.10Phytanoyl-CoA dioxygenase (PhyH) n=1 Tax=Azospiril... [more]
A0A6L7LI54_9RHOB1.950e-1037.76Phytanoyl-CoA dioxygenase family protein n=6 Tax=u... [more]
UPI00041803533.150e-1040.45phytanoyl-CoA dioxygenase family protein n=1 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13217contigM-pyrifera_M_contig13217:5254..8535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6.5e-17
Seed eggNOG ortholog4792.ETI57501
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2B580@1,2S0IH@2759,3QF9B@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size366
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13217.5884.1prot_M-pyrifera_M_contig13217.5884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13217 5254..8514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.1344743-CDS-M-pyrifera_M_contig13217:5253..53921622815811.1344743-CDS-M-pyrifera_M_contig13217:5253..5392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 5254..5392 -
1692277582.0150936-CDS-M-pyrifera_M_contig13217:5253..53921692277582.0150936-CDS-M-pyrifera_M_contig13217:5253..5392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 5254..5392 -
1622815811.1448202-CDS-M-pyrifera_M_contig13217:5951..60641622815811.1448202-CDS-M-pyrifera_M_contig13217:5951..6064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 5952..6064 -
1692277582.0273366-CDS-M-pyrifera_M_contig13217:5951..60641692277582.0273366-CDS-M-pyrifera_M_contig13217:5951..6064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 5952..6064 -
1622815811.155564-CDS-M-pyrifera_M_contig13217:8421..85141622815811.155564-CDS-M-pyrifera_M_contig13217:8421..8514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 8422..8514 -
1692277582.0369792-CDS-M-pyrifera_M_contig13217:8421..85141692277582.0369792-CDS-M-pyrifera_M_contig13217:8421..8514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13217 8422..8514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.171301-UTR-M-pyrifera_M_contig13217:8514..85351622815811.171301-UTR-M-pyrifera_M_contig13217:8514..8535Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13217 8515..8535 -
1692277582.0471623-UTR-M-pyrifera_M_contig13217:8514..85351692277582.0471623-UTR-M-pyrifera_M_contig13217:8514..8535Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13217 8515..8535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13217.5884.1

>prot_M-pyrifera_M_contig13217.5884.1 ID=prot_M-pyrifera_M_contig13217.5884.1|Name=mRNA_M-pyrifera_M_contig13217.5884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MCVFPPGVYPPLYVSVWLTLDDCDAVNGCLEVYPQAWNRPRLQSPGDEDD
ANVVCLPAKAGDAVVFLSNLWHRSGPNRTERARRVFYAQYSVDVIRATPS
DPRPLSLAVPCLRSR
back to top

mRNA from alignment at M-pyrifera_M_contig13217:5254..8535-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13217.5884.1 ID=mRNA_M-pyrifera_M_contig13217.5884.1|Name=mRNA_M-pyrifera_M_contig13217.5884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3282bp|location=Sequence derived from alignment at M-pyrifera_M_contig13217:5254..8535- (Macrocystis pyrifera P11B4 male)
GACGAGCGGGAGCAGCTCGCGATGTGCGTCTTCCCTCCCGGGGTCTACCC
CCCTCTGTACGTGAGCGTGTGGTTGACGCTGGACGACTGCGACGCGGTGA
ACGGCTGCTTGGAGGTATGCCCGATCTTTTTTTATTATTGTTTTGCACGC
CATTGGAAGGCGTTCGCGTGCTACTATAACAGTCCCCGCTGTGCTAGTCC
GTTGTGTTTCGTGAGGTTCGGGCGCCGACGTCGAGTCAACTGACTGCAGC
TTTCTCGGCGGGTCTCCCGCGAAAAATTAGCGTCACCATATACCAAATGT
ACTCGTGCCATCTACAGTGCATCTACGGTGCGGTCGAGAGTTTTATTCGT
GTCATGCATGGCCGTAGTCGTTCCTCGACAGTACAGTGCGGTAGGGAGTT
TACTCTTAGTTTTCTCTCATGTCATGCATGGCTGTAGTCGTATGACCAGA
GACCCTCGCAACCCCACTATGCCGGGGACGGAGCACGTCCGGTTTTCACC
GACCAGGCTGCAGACATTGCTTGCACCAAGCGCGAAGCGCCGTGCGGTAT
TCGGTGAGTCGCATGAAGCGGGAGCTGCATCTACTGAGAACATCTTGTGG
GGCAGACTATCTTTGCATATGGGTGACAGCGTCGAATTGCCTAGCAGGGG
CGGTACTGTTGGGTCCAAACACTTGGGATTGACGGGACTGCTCAACTTAG
GGAGTACCCAACAATAGGTGTGCAATCCCTTTTCTGCTTCACCTGGTACG
TGTGCATTCGCTGTGTGCCCAGCCCATGGAATTTCCCATCGGGTTGAACA
ACCATTATTTATCAAAAGTCGGTTTTTGGACGGGGTGTAAGAGCTCCTGA
TGTTAGGAACTCGAGAAAATTTGGGTACCCCCTAACGTGGCAAGATCCAC
TGGTTTTCGACAAACGAAATCTCTGGGATATAACCCAGGGGCCAACAGGA
GTACCGCAGTAGAGGGCGTTTAGCGCAGCGGTGTACCTTCACCTCACTCC
CGCGTTGAAAAAATGGCGTATACAGCCCAGCGGGCGGGCGAATCAATAAC
CCCGATGGACACCAAGGCGTGATGCCTCCAGCCGTGTTTTACGAGTTATA
GCCCAAACTTCGACAAAAAGTGGTTGAAACAAACTTGACCCTAAACCCTA
TACCCGTAACTCTTCACCCTAAGCTGGGAAAGTTCTCGGGAAATTATCTG
TTGGGAGACGCGTACTTACGATAGGAGTACCGTATCACACGTGCGGTAAG
ATAACACACACCCTGGTTTGAACTTCAGAGCCGATTTACTCCCAAACCAG
GAAAAGGTGCACACGATGTAAAATGGCTTTTTTGGGGGGGGAAGATCTCG
TCGAGGTTCGTCCGTAATAGACGGGTCTTCGCTCGGCGTTTTGCACTCTC
CCGGTTGTCGTCGAGAAAAATCAGCTTTGAGATTCGTTCTGAGGGCGGGG
TGTGTGTGCTATCTTTGCGTGCTATATAGTAGGAGCACGATTCGGCAAAA
AGTGTGTATGGCTGACGGTGCTGTTCGACTGAGGATAGACGACGCTGGGC
GTGATTATAAGGACCGCTTGGTTATCGTGCTAGTGTCTAACCGGTCCTTA
TATTTACGCCCAGACAGTGGTATATATGTTTCAGTGTAAGTACTGGTACA
AACACTGGTACCTGTAACCTGGTATCTATATTACTGGTCATTTCCCTCAC
AAAAAATACTGGTGCTCTACCTGGTAGATATGTTCCAGTGGACATACTGG
TATATGTACTGGTACCTGTAACCTGGTATATTTATATGCTGGTCGCTTCC
CTCACAAAAAAACTGGTTCATACCACTCTGGACGCAAATATATGGACTTC
TTTGTCTTCATATTAATGTATAAACAGTCCTTATGTTTACGCCCAGAGTG
CTAGGCACCAGTTTTTTGGTTGTGAGGGAAGTAACCAGTATATATAGATA
CAGTACTAGGTTACGGGTACCGGTATATATACCAGTATTTTTTTTTACTC
TTGGCTGAAATACAAGGACCGCCTGGTCTTCATACCGGTGTGTAAACGGC
CCTTGTATTTCCGCCCAGAGCGGTCCCCATTAAGGCACTCCTTTACCCAC
CATTTATTTTTTACAGCATCTTTCGTTTTGGACCTATACGCTATAGGGTT
GTTTCATCGGGATGTAGTTCCATTTTTTCCCCCTCAAAGTGTTTGGGTGA
CGCGAGAGAGGGGTCCCCAGAAAACGTGTGTCTGGTATGATATGATAGGT
GATAACCCAATCCTATTGCGGGGGACCATAGTAAATAGGACCTGCGGTAC
ACACAAAAAACTGTATATTTTCCTATTTTTACTGACAATATTTGGTCCTG
TTTACTATGGTCCCTTACCGTAATAGTGGGATGCGCGTCAGGATGAGTTT
TTGTGCACCGTCAGCCGTACTTGGCGCAGTTGAGCCGAATCGTGAACACC
GCTGCTGCGTCCGCCGTCCAGGTGTACCCTCAAGCTTGGAACCGGCCGCG
ACTGCAGAGTCCTGGCGACGAAGACGATGCCAACGTCGTGTGCCTCCCCG
CTAAGGCCGGCGACGCTGTTGTCTTCTTGTCCAAGTGAGGTTTATGTAAC
TATTTTCCCCCTGCAACCATTATCCGCTCTGGTCTCGAGAATTTTTTCCC
CGAAAAACCTGGGTGGTGTAGATCTGAAGGGGATACGGGCGCGCTCAGTC
CCCCCCCCCCCCCTCAACCAAGCCGTACATAGCGCGCTGCCATGGTTGAA
GGTTTGAAGGTTGCGCCCGCGAATGCAGTAGCTTACCGAAACGCTCTTAC
GTTTTTTTGTTTGTTGTGTGGTTGTGTGGGGATCGGGCGCTGGCACGCTG
GAGAAGCGTTCCGCTATAAATTAGAAGAGGCCCCTCCTCGATCGCTCCGT
CCTCGTACCAGCACTGGTACATTGATTCGTGATTGGTTGGTTGGTTAATT
GGCTCGGTCGATCAAGTGATTGACTGAAGGCTTGATTGGTTGATTGATTG
ATTGACGGAACCTTCTTTTAGGGGACGTGGAGGATTCGAGTTTGACGCGT
AAAACACGTGGCTTCATCCGGCGGTGATAGTTTCCTCCCTCCCTCCGATA
CGCGCGCGTTGTTTTCGTCTGTGGTTGTACCTGCCGTCGGAAGCCTCTGG
CATCGAAGCGGACCTAACCGAACGGAGCGGGCACGGCGCGTCTTCTACGC
GCAGTACAGCGTCGACGTCATCCGCGCCACCCCTTCCGACCCCCGCCCCC
TGAGCCTTGCGGTGCCCTGCCTCCGTTCCCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13217:5254..8535-

>mRNA_M-pyrifera_M_contig13217.5884.1 ID=mRNA_M-pyrifera_M_contig13217.5884.1|Name=mRNA_M-pyrifera_M_contig13217.5884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig13217:5254..8535- (Macrocystis pyrifera P11B4 male)
ATGTGCGTCTTCCCTCCCGGGGTCTACCCCCCTCTGTACGTGAGCGTGTG
GTTGACGCTGGACGACTGCGACGCGGTGAACGGCTGCTTGGAGATGTGCG
TCTTCCCTCCCGGGGTCTACCCCCCTCTGTACGTGAGCGTGTGGTTGACG
CTGGACGACTGCGACGCGGTGAACGGCTGCTTGGAGGTGTACCCTCAAGC
TTGGAACCGGCCGCGACTGCAGAGTCCTGGCGACGAAGACGATGCCAACG
TCGTGTGCCTCCCCGCTAAGGCCGGCGACGCTGTTGTCTTCTTGTCCAAG
TGTACCCTCAAGCTTGGAACCGGCCGCGACTGCAGAGTCCTGGCGACGAA
GACGATGCCAACGTCGTGTGCCTCCCCGCTAAGGCCGGCGACGCTGTTGT
CTTCTTGTCCAACCTCTGGCATCGAAGCGGACCTAACCGAACGGAGCGGG
CACGGCGCGTCTTCTACGCGCAGTACAGCGTCGACGTCATCCGCGCCACC
CCTTCCGACCCCCGCCCCCTGAGCCTTGCGGTGCCCTGCCTCCGTTCCCG
TCCTCTGGCATCGAAGCGGACCTAACCGAACGGAGCGGGCACGGCGCGTC
TTCTACGCGCAGTACAGCGTCGACGTCATCCGCGCCACCCCTTCCGACCC
CCGCCCCCTGAGCCTTGCGGTGCCCTGCCTCCGTTCCCGT
back to top