mRNA_M-pyrifera_M_contig1318.5871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1318.5871.1
Unique NamemRNA_M-pyrifera_M_contig1318.5871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1318.5871.1 vs. uniprot
Match: D7FUT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.520e-13
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:   11 PKPSRRVYMHISGAAFVRIAPGGLVFLQNLHWCDTGEAIEQDGGAVECLPDQLLDNLHRVVTATHLARCVVNSAISEAVD 250
            P+P  R YMH +GA FVR+APGGLV L N+HW D+GE  +Q  G    L  +L D L+ +V  TH A+    S ISEAVD
Sbjct: 2062 PRPKGRAYMHRTGAVFVRVAPGGLVLLPNVHWRDSGEHADQPPGRNRQLQRRLRDTLNNLVVVTHNAQAAATSVISEAVD 2141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1318.5871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUT6_ECTSI4.520e-1351.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1318contigM-pyrifera_M_contig1318:24434..26386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog2880.D7FUT6
Preferred nameIML1
KEGG koko:K20404
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size1410
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1318.5871.1prot_M-pyrifera_M_contig1318.5871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1318 24468..25280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.972605-UTR-M-pyrifera_M_contig1318:24433..244671622815809.972605-UTR-M-pyrifera_M_contig1318:24433..24467Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1318 24434..24467 +
1692277581.3920918-UTR-M-pyrifera_M_contig1318:24433..244671692277581.3920918-UTR-M-pyrifera_M_contig1318:24433..24467Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1318 24434..24467 +
1622815810.0133388-UTR-M-pyrifera_M_contig1318:25280..263861622815810.0133388-UTR-M-pyrifera_M_contig1318:25280..26386Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1318 25281..26386 +
1692277581.4224234-UTR-M-pyrifera_M_contig1318:25280..263861692277581.4224234-UTR-M-pyrifera_M_contig1318:25280..26386Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1318 25281..26386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.9887064-CDS-M-pyrifera_M_contig1318:24467..245541622815809.9887064-CDS-M-pyrifera_M_contig1318:24467..24554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1318 24468..24554 +
1692277581.404278-CDS-M-pyrifera_M_contig1318:24467..245541692277581.404278-CDS-M-pyrifera_M_contig1318:24467..24554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1318 24468..24554 +
1622815810.0029385-CDS-M-pyrifera_M_contig1318:25097..252801622815810.0029385-CDS-M-pyrifera_M_contig1318:25097..25280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1318 25098..25280 +
1692277581.412381-CDS-M-pyrifera_M_contig1318:25097..252801692277581.412381-CDS-M-pyrifera_M_contig1318:25097..25280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1318 25098..25280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1318.5871.1

>prot_M-pyrifera_M_contig1318.5871.1 ID=prot_M-pyrifera_M_contig1318.5871.1|Name=mRNA_M-pyrifera_M_contig1318.5871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MHISGAAFVRIAPGGLVFLQNLHWCDTGEAIEQDGGAVECLPDQLLDNLH
RVVTATHLARCVVNSAISEAVDAALTKQRASHVNSAASF*
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mRNA from alignment at M-pyrifera_M_contig1318:24434..26386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1318.5871.1 ID=mRNA_M-pyrifera_M_contig1318.5871.1|Name=mRNA_M-pyrifera_M_contig1318.5871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at M-pyrifera_M_contig1318:24434..26386+ (Macrocystis pyrifera P11B4 male)
CCATGGCAATCCAAAGCCGTCCCGCAGAGTATACATGCACATTTCGGGCG
CCGCGTTCGTCCGCATCGCCCCTGGTGGATTGGTGTTCCTCCAAAACCTG
CACTGGTGTGACACCGGCGAGGTAGGTCAGGGGTACCGTCGAGCGTAACA
GATCTCGTCCTTTCTGAAGCGGGTGTTCGGGTCGGTTTGCGGGACCGTCT
TTGAGTGGCGTGTGTTGGCCACCTTTGTGTGTCACCCCATCCTCTGCCGG
GAGTCAAAAACCGCGAAAAGGTCATTGCCGCGTTAGTCTTAACCTCTGTA
CACTGTACACACCCGATGGAACCGACGATTTTTGATGGGCAGTCCTCCGC
ATTTTACCGTACGCCACCAGACCCGTGATCTTTCAACCATCGTTGCGCAG
TTTAGGATGTGAGGGTGATGATGTGTCCAGGCACATGTGGAGCGGATAGT
CCGCTAGTGTCAAGGGCGGCGCGCCAATAGCCCAAAATTAGAAGTGTACT
GTAGCACAATAACAATTGGACTTTATTATTTATCTCTACACCAATGCATG
CCAAGTAGTGGATTCCGCTCACGCCATTGGACGTCTGTCAAGGGCTGTGC
GTGCTCGCCTTCCCTGCACTGTGTAATTTCCCGACAACGCTTGGCGCAAT
CGATCGAATAGCAGGCTATTGAGCAAGACGGGGGAGCAGTGGAGTGCCTG
CCAGATCAATTGCTAGACAATCTCCATCGGGTGGTGACGGCGACCCATTT
GGCTCGATGTGTGGTGAACAGCGCGATCAGCGAGGCAGTGGACGCGGCTC
TTACTAAGCAGCGAGCTTCTCACGTGAACAGCGCGGCTTCCTTTTGACCT
GTCCTATTTGGCTTTCTCTGTTGCTGCCACGCAAGTAATGGATGGTTTTG
GGTCGTAGCAATGTCGGGAAAGGAAAAAAAGTGAGGCAAATCTACTTTCG
CCCAGCCCTGCGATGCCCAACAAGGTATGTCGTTTGTGAACGGGGCTTGG
GCTGGTGCTGCTGTGTGGCTTAGCGACAACGTGGTCGCAAGATGAACGTG
TCATTTTTCGTCCTGTTCAGTTGAACAGGACTCGTCTGCTGGTTGTATGA
AAGGTCCCGTTCACCGAGGCCGAAGCGGTCCCCTGGGTTGGACACGATTG
CGTGGTAGTACTGTAGGTGACTATAAGTTGGAGTGTAAGTACGAGGGTAG
CGCTGAAAGGGTTGATCCCAGTTGGCGTAGATTTGTTTAGATCCCCATGC
AGTCGCCCGGGCCTATGTACTGAATGAGCTGGTTGTGAGGTGGTGTAGTT
ACACGAGAGGGTTAAGAGTAAGGCGTCCAGGTCGATTGTATCGTGGTTCC
CCCCTGATATACTTGGGCTTTTGATATATTTGTGTTTCTCCCCGGTGTGA
TTTTATTTTGGTTTTTGAGACGTGGTGTATCCGTCCACATGAGTACCGCG
GGTCACATTCCGAGTTGGTATTGTCTCTTGCGCCCTGTCCATGTTGAATC
GGATTTCGGTACGTATTTGTCTTGTATCCAACTTTCACATGGCACGGGAT
TGTCATTTATGGTTTCCCACGTGTTTCAGTATGGGCGCGTTGACTTTTCT
TGTTTGTCGTGATTTCGTGCCGCTTATGGGTCGACGTCCGGGTGCTTGCC
TGCTCCTCGTCATGAGTTGGATCGAGGAGGAGCAGGCCATGTGTAGAGTG
CCGCACGCCAAGTTGCCTTCCATTGCAGCGTCTATTGGTAGCGCTTAGTT
TGTATCGTATGTAATGATGTACTGACATGAACTTTGTCAATCTTGCGCTT
CTTGTGACCGTGATTTTGATATATCGGGCTGATACTGAGGCAGTCTTGAA
CTATCATAGGTAATACTAATATTGTCGGGGGTACATAGTTAACAGGACCT
ATGATGTACATAAAAACCTATATATTTGCCTATTTTTACTAACAAAATTT
GGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1318:24434..26386+

>mRNA_M-pyrifera_M_contig1318.5871.1 ID=mRNA_M-pyrifera_M_contig1318.5871.1|Name=mRNA_M-pyrifera_M_contig1318.5871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig1318:24434..26386+ (Macrocystis pyrifera P11B4 male)
ATGCACATTTCGGGCGCCGCGTTCGTCCGCATCGCCCCTGGTGGATTGGT
GTTCCTCCAAAACCTGCACTGGTGTGACACCGGCGAGATGCACATTTCGG
GCGCCGCGTTCGTCCGCATCGCCCCTGGTGGATTGGTGTTCCTCCAAAAC
CTGCACTGGTGTGACACCGGCGAGGCTATTGAGCAAGACGGGGGAGCAGT
GGAGTGCCTGCCAGATCAATTGCTAGACAATCTCCATCGGGTGGTGACGG
CGACCCATTTGGCTCGATGTGTGGTGAACAGCGCGATCAGCGAGGCAGTG
GACGCGGCTCTTACTAAGCAGCGAGCTTCTCACGTGAACAGCGCGGCTTC
CTTTTGAGCTATTGAGCAAGACGGGGGAGCAGTGGAGTGCCTGCCAGATC
AATTGCTAGACAATCTCCATCGGGTGGTGACGGCGACCCATTTGGCTCGA
TGTGTGGTGAACAGCGCGATCAGCGAGGCAGTGGACGCGGCTCTTACTAA
GCAGCGAGCTTCTCACGTGAACAGCGCGGCTTCCTTTTGA
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