mRNA_M-pyrifera_M_contig13123.5855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13123.5855.1
Unique NamemRNA_M-pyrifera_M_contig13123.5855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 2.350e-80
Identity = 114/173 (65.90%), Postives = 139/173 (80.35%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAGWSDLK 519
            GE I+V FQL+P+  +R SWWLS+ISPWFAGAMLFQ+LWC SFRPWARD+GLLW+P L+LGG  VALGGVH  LR AWF  DM V QY   HVP+SLH GWI+CA+LVNLNG+FA+I +LS+R KL  +L +V AA  +G  I+  REDP++ AV+AWALWAVGSPAGW +L+
Sbjct:  364 GEAIYVAFQLMPLPSIRGSWWLSDISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAGWDELR 536          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A835Z9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.310e-56
Identity = 87/175 (49.71%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGL--LWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAGWSDLK 519
            GEL+FV++Q LP+  VR SWWL+E+SP+F+GAML Q+LWC +FRPWAR AGL   W+P L+LG  A ALGG H  L  A    ++    Y LA VP++LHFGW+T A+LVN NGF A+    S   K  A++ ++  A +VGA ++++R DP++ AV+AWAL A+   A W  L+
Sbjct:   91 GELLFVIYQALPLARVRTSWWLAELSPYFSGAMLLQTLWCGAFRPWARAAGLNLQWIPALLLGLGAAALGGAHGILVQALEDSELSPLSYALAFVPLALHFGWLTAAALVNANGFVAAAAPRSHAVKASAAIASIYLAVLVGAAVTFARRDPIYAAVIAWALAAIADEAAWGKLR 265          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.420e-50
Identity = 80/174 (45.98%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRES-WWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAGWSDLK 519
            GE    ++Q LP++ V  +  WLS++SPW + A L QS WC SFR WARD+GLLW P  +LGG A  LGG H  +R A  A +M   QY L H+P+SLHFGW++CA+LVN N + + +P  SD+ KL  SL ++ +A  +   ++ +  DP++  V+AWAL AV S  GW+ +K
Sbjct:  106 GEAALAVYQTLPLEGVSAAAGWLSKLSPWLSSAFLVQSCWCLSFREWARDSGLLWFPAALLGGTAACLGGAHHVVRGALAAGEMSNLQYGLVHLPVSLHFGWVSCATLVNFNNYISLLP-FSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKGWAKMK 278          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A7S2UXB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXB1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.200e-44
Identity = 71/173 (41.04%), Postives = 116/173 (67.05%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAGWSDLK 519
            GE +F  FQLLP++ V+ S+ + +++ W+  A+  QSLWC++FRPWA+ +G LW+P  +L   AVALGG H  L +A  ++++ + +Y + ++P++LHFGWIT ASLV+ NG+ AS+   S   K +AS  ++ A  +  A++ ++R +P +  V++WAL AV    GWS L+
Sbjct:  112 GEALFAFFQLLPIETVQTSF-IPKLTVWWIPAVACQSLWCSAFRPWAKKSGFLWLPAALLTLTAVALGGAHKVLFDALHSEEVSMLEYIIVNIPLTLHFGWITAASLVSWNGYLASVTA-SISIKSLASSASIVAGVIAAALVGWNRIEPFYPLVVSWALAAVADKKGWSQLE 282          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A6V1K7Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7Z9_HETAK)

HSP 1 Score: 133 bits (334), Expect = 3.730e-34
Identity = 66/175 (37.71%), Postives = 102/175 (58.29%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNA--WFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAGWSDLK 519
            GE IFV +Q LP++Y++   +L+ +SP++  A+ FQS+W    RPWA + G  W+   +L    VAL GVH  + +       D+++  + +A +P+SLHFGW+  A LV++NG  A  P L+ R K + S  +V  ATV+G V++  R DP+    L+WAL  +     W  LK
Sbjct:  154 GETIFVFYQALPINYIKNKDFLAMLSPFWIAAIGFQSIWTFCARPWAVENGYGWIQAALLVLTGVALSGVHKVMTSQPHTLVGDLNILDFIVAQIPLSLHFGWMMAAGLVSVNGVLARTP-LTIRAKHLFSDASVVVATVIGVVVAAKRTDPVVAFALSWALAGLADDKAWEKLK 327          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A7S0WI04_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI04_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 5.620e-34
Identity = 70/176 (39.77%), Postives = 105/176 (59.66%), Query Frame = 1
Query:    4 ELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRN------AWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPR---LSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAG 504
            E IF + QLLP   + +  WL ++SPW+  A ++QSLWCA+FR WAR +G+ W+   +L   A+AL G  + +        +W A    V Q  LA +P+SLHFGW+T ASLVN N FFA + R   +S R ++  +  ++  A +VG++++  R D L+   LAWAL A+ +  G
Sbjct:  133 ESIFTVVQLLPS--MTDVTWLLDVSPWWVAANIYQSLWCAAFRDWARPSGVFWISAALLTATAIALAGAEAVVTGPSVGTGSWTA----VGQRVLAQMPLSLHFGWVTAASLVNWNSFFAVLYRDAHISLRTQIWLAFASLHLAYIVGSIVAVVRMDFLYSLTLAWALTAIKTDKG 302          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.490e-31
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESW-WLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAV 489
            GE +   +QL           +L+ ++P  A A   QSLWC +FRPW     + +VP+ +L   AV L  VH+ LR A  A  M    Y + H+P+SLHFGWITCA+LVNLNG+FA  P L    KL  +L ++  A  +G+ ++ +  DP+   V+AWAL+AV
Sbjct:  169 GEFLLTFYQLASSRLAPALQPYLARLAPPLAQAFAAQSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAV 330          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU)

HSP 1 Score: 115 bits (288), Expect = 1.910e-28
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   73 ISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAVGSPAG 504
            ++P +A A  FQ+LWCA+FRPWA+     WV + +L   AVALG  H  LR A  A     + Y+  HVP+S+HFGWI+CA+LVNLN   A     +   +L  +  +   A  +GA ++ +  DP++  V+AWAL AV S  G
Sbjct:   77 VAPSWALACAFQALWCAAFRPWAKAPRHFWVSSALLVAEAVALGSAHRALRAA--ASAASKAWYWTTHVPLSMHFGWISCAALVNLNSHVAK--TCAPDTQLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGG 216          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A7S2LK24_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK24_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.990e-27
Identity = 68/168 (40.48%), Postives = 93/168 (55.36%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLRNAWFAK---DMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKL--VASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAV 489
            GEL FV+ Q    D    +  +  IS  F  A LFQ+LWCA+FRP      L+W+ T MLGGVA  L   H+   +A   +        +Y +  +PISLHFGW T A+LVNLNG  A     +    L  V    +V AAT +G  I++SR+ P++  V++WAL+AV
Sbjct:  121 GELAFVISQFFVKDKQLLASQIQSISAPFVIAQLFQTLWCAAFRP-KYTGNLMWISTGMLGGVAYYLSKAHAVFTSASSVRMIPGFSWWEYAIHFLPISLHFGWTTAATLVNLNGAVAVADYRTSSNALINVVGHASVVAATALGVAITFSRQAPVYGGVISWALFAV 287          
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Match: A0A7S2UG41_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG41_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.930e-25
Identity = 68/165 (41.21%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 GELIFVLFQLLPVDYVRESWW-LSEISPWFAGAMLFQSLWCASFRPWARDAGLLWVPTLMLGGVAVALGGVHSRLR-NAWFAKDMDVSQYFLAHVPISLHFGWITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDPLFEAVLAWALWAV 489
            GE+  V  Q L +D    +   L + S  F  A +FQSLWCASFRP  +    +++   ML G A +L  VH     ++     +   QY L  +P+SLHFGW T ASLVNLNG  A  P  S R        TV  A+ +GA IS +R  P+F  V+AWAL AV
Sbjct:  109 GEMAMVASQWLLLDESSPTRAILQKASAPFVVANVFQSLWCASFRPKYKKGYYMYLSWAMLTGTAYSLSKVHETYSYSSSINSGVSFGQYCLYFLPLSLHFGWTTAASLVNLNGAVALNPSASPRVVAWVGHATVIGASALGAAISLTRSAPVFGGVIAWALLAV 273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13123.5855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC2_ECTSI2.350e-8065.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9R9_9STRA1.310e-5649.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FS55_ECTSI1.420e-5045.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UXB1_9STRA1.200e-4441.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1K7Z9_HETAK3.730e-3437.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0WI04_9CHLO5.620e-3439.77Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A4D9D883_9STRA2.490e-3140.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A4S135_OSTLU1.910e-2841.67Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A7S2LK24_9STRA4.990e-2740.48Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UG41_9STRA1.930e-2541.21Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13123contigM-pyrifera_M_contig13123:5003..8717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.2
Seed ortholog evalue3.7e-67
Seed eggNOG ortholog2880.D8LCC2
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CRKW@1,2S47J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size540
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13123.5855.1prot_M-pyrifera_M_contig13123.5855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13123 5003..8717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.4512277-CDS-M-pyrifera_M_contig13123:5002..51101622815808.4512277-CDS-M-pyrifera_M_contig13123:5002..5110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 5003..5110 +
1692277580.4021478-CDS-M-pyrifera_M_contig13123:5002..51101692277580.4021478-CDS-M-pyrifera_M_contig13123:5002..5110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 5003..5110 +
1622815808.4636593-CDS-M-pyrifera_M_contig13123:5790..59691622815808.4636593-CDS-M-pyrifera_M_contig13123:5790..5969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 5791..5969 +
1692277580.415716-CDS-M-pyrifera_M_contig13123:5790..59691692277580.415716-CDS-M-pyrifera_M_contig13123:5790..5969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 5791..5969 +
1622815808.4756577-CDS-M-pyrifera_M_contig13123:8464..87171622815808.4756577-CDS-M-pyrifera_M_contig13123:8464..8717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 8465..8717 +
1692277580.4240274-CDS-M-pyrifera_M_contig13123:8464..87171692277580.4240274-CDS-M-pyrifera_M_contig13123:8464..8717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13123 8465..8717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13123.5855.1

>prot_M-pyrifera_M_contig13123.5855.1 ID=prot_M-pyrifera_M_contig13123.5855.1|Name=mRNA_M-pyrifera_M_contig13123.5855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
GELIFVLFQLLPVDYVRESWWLSEISPWFAGAMLFQSLWCASFRPWARDA
GLLWVPTLMLGGVAVALGGVHSRLRNAWFAKDMDVSQYFLAHVPISLHFG
WITCASLVNLNGFFASIPRLSDRFKLVASLCTVTAATVVGAVISYSREDP
LFEAVLAWALWAVGSPAGWSDLKVCHKRR*
back to top

mRNA from alignment at M-pyrifera_M_contig13123:5003..8717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13123.5855.1 ID=mRNA_M-pyrifera_M_contig13123.5855.1|Name=mRNA_M-pyrifera_M_contig13123.5855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3715bp|location=Sequence derived from alignment at M-pyrifera_M_contig13123:5003..8717+ (Macrocystis pyrifera P11B4 male)
GGTGAGTTGATCTTCGTGCTGTTCCAGCTGCTTCCGGTGGATTACGTTCG CGAGTCCTGGTGGCTTTCCGAAATCAGTCCGTGGTTTGCCGGCGCGATGC TCTTTCAGGTAAGAACCATGTTTGAGCAGTGTGGCCCAATTCCACGATTC CTGTGGCCCGCCCCCCTTCCCCGAGTATGTCGGTTCGAACGTCGCTCGCT TATTCCCCCTTTGTCTCGGGCGCTCTGCGGCGGAAAACAAAAATGTGTCC GATCACACGTATCAGTCTGGTCCGATTACTGGAAGAAAACAAACAAAGAC ACACACTCACGCTTTCTACCAAGCACGAGTCGACGCGAGTCGACGAGGAG AAGCAAGGGGTTGAATCGTTTCTAGCGATAAAAAATGCAAGGCACGAACC GTTGTGGGGAGGGGGGGGGGGAGAAGGGCCTGCAAAGTGTGACCCCGGAC CAGAGTTTACTGTTATAGGGGGAGATGGAGAGATAAAAAAGAAGGGCGAG GATAAGAAATGGGATGTAAAAAAGATGTGTGAGTAAACTAATGCGAACAG ATGTAAGAGACGTATGTCACGAATCAAATGCCAGACACCAAGTATGCAGG AGGATGTAAGCCGTAATGCCAGATACCAGGTATGTATGAGGATATAAATC ATGCAAGCACGGGCGGGGACATTAGTGAGAGCGAAGCAGGCACAGCACGC GGGTATAGCAGCACAGTCCACGAGCCCCACATCCAATCCTCCCCCCCTCC CTCCCCCCTCTGGGTCTTTCCTGTGATATGCTCGACAGAGCCTCTGGTGT GCCTCGTTCCGACCCTGGGCGAGGGACGCTGGGCTGCTCTGGGTACCCAC ACTGATGCTGGGGGGCGTAGCTGTCGCCCTCGGAGGCGTACACAGCAGAC TCAGGAATGCGTGGTTCGCGAAAGACATGGATGTGTCGCAGTACTTCTTG GCCCACGTACCCATCAGGTGTGTTCCGAACCGTGGAGACTGCTGTGGTCG AGTACCTTTAACGATGTACCAGATATGTGCTTCTGAAAATAGCCGATTTT CCTATGATAACTGAGGAGGGATACCTCCGAGGACGATGATAATATAACAA AAAAGTACTGTTTTTTTTTCGTTGTTAAGAGATGTACTTCCCTCACAGTC AAAACTCACACACAGTCAAAACTCACGCTGCAAAATATTGTCGTTTTGCG ACCTGTGACAGCCGTCGATGACACCCAAAGCCAAAAAAATCAAAATCAGC ATTCGGCAGTCTCTCGAAATATCGAAAATGCAAATTCCGAAATAATCGGG ATTTTTTGGGCGAATCGCCTCGCCCCAAAATGCCTTTTTTTGTATGCTCT GTTTTACGAGCATGTCGACGCTGAGTTTGAACCTTTTTTTGGTGGAACTA TACCTATCGTCAATGAACAGGTATTCTAGGTTTAGAGTTTGGTTGCGAGG GAAATACAACTCTTGAAGGACAAAAGTATTATAAAATCGAATAATCATTC TCATCGGAAAGGCAATTCTCAGATAGGAAAATCAGCTGTTTGGATCTGAG GCGGCGAGCGAGCGAGAGCTGTGGGAAGGGGGGAGGGTCTCTGCTTGTGA TAATGATGCACGCGCGTGTTCGTCAACATTCGTGCAATGGGAAAGTGTTG ATGCAACGGGGGAAATTGCCCCATGTGATAAATTGCCCCCCGTTCCGTCC CAGCAACGTTGATTAGAGAGCCTCGGCTTCCCTTCCTTTGGTCGAACCAC GCACGACGCAAACTGCTGTTTCGGTGAACGAGGGGGAGAGGGTATGAAAA CACGTGCGCTCGGGATTTCAGGAGAGTCTGTACCGGTGTCTTAAATGATG GTCGTCTTGCTTTCTTTCCGCGGCGCGTTACTGCGTCAACATGTGTGCGT TCATGGTGCATGCCGTCGGGCCGCAGGGTGGCGCTCTTGACTTCGTCGTC TTGGTCAAGTCTTCCTCCGCTCATGTTTCTAAGGGAAGGTGGCGGTGTTA GTCCAGGGTGGCCGCGATGTTCCCCACTGGACTCATGCCTCGCATGTGTC GTGTCCCGTGATGCCCTTTGGTGTCGACTCGGGGGTCGCGACCCACCCCT AACGCCGTTTAGAAGTTATCGGTTTAGAAAACACCTACTACTCACTGGCT GGCCTTCGGAGTCACATGACTACAGTATGTGGTCGCTCTGTAGTGGCGGT ATGTGCCAGGCCAATACACGGGCAGCGTAACGGACACCGGCATTATTCCG CACACTGCCACGCTGATTAATACCTGGTACCATCTGTGCCAAGCGGTTTC ACCGGCATTATATCGTACGCCGGCAATATTAAACCGGCATGCATAGAGGA ACTCCTACCGTATGTAGGTGGGCCAGCCGGCAGTGCTATACAACGAAACC ACCGTGCGTGATGTCTCCAGCGCGCCGCGCACGCTCGAAGAGAAGAAATA AAGAATCGGCGACAATCGAACTCGCGACCCTTCCTTCCCGACTACGACTA GCCTACTGAATCACGTGACTGTCGGCCAGTGGGGTAGTGCCTTATAGCCA AGAGAAGCCCACCCGCGTTGTGGGGGGCAAACTGCTCAGGGAATAAGAGT CGAGCTGGGGGGTTTTTAAGCAGCGGCAAAAAGGTTATATACGTAACGCC ATTGCCGTTTCCCACCGCCTGTAAAGAACAAGGAATAATGGCCGAGTCTT GCGAGAGCATTATTTTCCACCACCCTCCCCCGTTGAAGAAAAATGGAACC TACTCTTTAAATAAGTGCCAGTTTTTTCTCACAATATTATCCGAAGCACG CCGGCGGCCCATCTAAACGCGTTTTGCTGGTTGCCATGGCGTGAGACCAA CCCCGAAACAGGTCGGCGCGGCGACCGATCTGAATGCTTGGCTGGCTTCC ATCTAGAAAAATCAACTCTCCAGAACATGCCGGGCGGCAGTCCCATCTAG AAAGTTTTGCTTCGCGCTGCTGCTGCAGCGAATTAAAGTTGAAACAACAA CGCCTCTCACGGCCCCTCTACCCCTCCCCCCCCCCCCCCCCCCCCCCCCA CCCCCACCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA CCCCCCCCACCACCCCCCCCCACCCCCCCCCCCCCCNNNNNNNNNNGGGC GGCAGCCCCATCTAAAAATTTTTGCTCCCCCCGCCGCCTGCACGGAATAA AAGTGAAAAAAAAAACCCCCCCCCCGCCCCCTCCCCCCCCCCCCCCCCCC GCGCGCACATGCATGATATCGAGTACAGACCCCTCCCCCCGCAATGTCTG TCTAGATCGATGATCACCCAACGTGCTCCGTCCCGGCATTATGGGGATGC GAGGGTGTATGGTTAAACGACATTTCCATGCATAACATGAATGCACACCC CCCCCCGCCGCGCGCTCCCCCCCTCCGCACCCCTCAACTTCCTTCCACCC GCTCTCCGCCAGCCTCCACTTCGGCTGGATAACATGCGCGTCGCTGGTGA ATCTCAACGGGTTTTTCGCGTCTATCCCGAGGCTTTCGGATCGCTTTAAG CTCGTCGCGTCCTTGTGTACCGTGACCGCGGCGACGGTGGTCGGGGCCGT GATTTCGTACAGCCGCGAGGACCCACTATTCGAGGCCGTCTTGGCGTGGG CCCTCTGGGCCGTGGGGAGCCCCGCCGGCTGGAGCGACCTCAAGGTGTGT CACAAGCGGCGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13123:5003..8717+

>mRNA_M-pyrifera_M_contig13123.5855.1 ID=mRNA_M-pyrifera_M_contig13123.5855.1|Name=mRNA_M-pyrifera_M_contig13123.5855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig13123:5003..8717+ (Macrocystis pyrifera P11B4 male)
GGTGAGTTGATCTTCGTGCTGTTCCAGCTGCTTCCGGTGGATTACGTTCG
CGAGTCCTGGTGGCTTTCCGAAATCAGTCCGTGGTTTGCCGGCGCGATGC
TCTTTCAGGGTGAGTTGATCTTCGTGCTGTTCCAGCTGCTTCCGGTGGAT
TACGTTCGCGAGTCCTGGTGGCTTTCCGAAATCAGTCCGTGGTTTGCCGG
CGCGATGCTCTTTCAGAGCCTCTGGTGTGCCTCGTTCCGACCCTGGGCGA
GGGACGCTGGGCTGCTCTGGGTACCCACACTGATGCTGGGGGGCGTAGCT
GTCGCCCTCGGAGGCGTACACAGCAGACTCAGGAATGCGTGGTTCGCGAA
AGACATGGATGTGTCGCAGTACTTCTTGGCCCACGTACCCATCAGAGCCT
CTGGTGTGCCTCGTTCCGACCCTGGGCGAGGGACGCTGGGCTGCTCTGGG
TACCCACACTGATGCTGGGGGGCGTAGCTGTCGCCCTCGGAGGCGTACAC
AGCAGACTCAGGAATGCGTGGTTCGCGAAAGACATGGATGTGTCGCAGTA
CTTCTTGGCCCACGTACCCATCAGCCTCCACTTCGGCTGGATAACATGCG
CGTCGCTGGTGAATCTCAACGGGTTTTTCGCGTCTATCCCGAGGCTTTCG
GATCGCTTTAAGCTCGTCGCGTCCTTGTGTACCGTGACCGCGGCGACGGT
GGTCGGGGCCGTGATTTCGTACAGCCGCGAGGACCCACTATTCGAGGCCG
TCTTGGCGTGGGCCCTCTGGGCCGTGGGGAGCCCCGCCGGCTGGAGCGAC
CTCAAGGTGTGTCACAAGCGGCGCTGACCTCCACTTCGGCTGGATAACAT
GCGCGTCGCTGGTGAATCTCAACGGGTTTTTCGCGTCTATCCCGAGGCTT
TCGGATCGCTTTAAGCTCGTCGCGTCCTTGTGTACCGTGACCGCGGCGAC
GGTGGTCGGGGCCGTGATTTCGTACAGCCGCGAGGACCCACTATTCGAGG
CCGTCTTGGCGTGGGCCCTCTGGGCCGTGGGGAGCCCCGCCGGCTGGAGC
GACCTCAAGGTGTGTCACAAGCGGCGCTGA
back to top