mRNA_M-pyrifera_M_contig13073.5840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13073.5840.1
Unique NamemRNA_M-pyrifera_M_contig13073.5840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13073.5840.1 vs. uniprot
Match: D8LEX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX1_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.260e-46
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 MSSPPKPASPWAVKLANEGKEQGVPVEKIRQKLVLEGLEPDLINVVLKGSGAGGDVGSEEH-VAPSSPSTSPQRQQLSARKFHDMLLVGLPPAVVRQKMAMEGCPPEEINTFFAS 342
            M+SP K A+PWAVKL ++GKEQGVP EKIRQKLVLEGLEPDLI+ V++     G + ++ H + PSSP TSPQR+QLSARKFHDML VGLPPAVVRQKMAM+GC PEEIN FFAS
Sbjct:    1 MASPGKAAAPWAVKLVHDGKEQGVPAEKIRQKLVLEGLEPDLIDGVVEA----GSLSAKLHTIEPSSPCTSPQRRQLSARKFHDMLSVGLPPAVVRQKMAMDGCQPEEINNFFAS 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13073.5840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEX1_ECTSI1.260e-4672.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13073contigM-pyrifera_M_contig13073:1665..4859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWASH complex, subunit CCDC53
Ec32 orthologEc-21_005870.1
Exons3
Model size342
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13073.5840.1prot_M-pyrifera_M_contig13073.5840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13073 1665..4859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.1487122-CDS-M-pyrifera_M_contig13073:1664..17061622815807.1487122-CDS-M-pyrifera_M_contig13073:1664..1706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 1665..1706 -
1692277579.5993187-CDS-M-pyrifera_M_contig13073:1664..17061692277579.5993187-CDS-M-pyrifera_M_contig13073:1664..1706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 1665..1706 -
1622815807.159557-CDS-M-pyrifera_M_contig13073:4136..42001622815807.159557-CDS-M-pyrifera_M_contig13073:4136..4200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 4137..4200 -
1692277579.608442-CDS-M-pyrifera_M_contig13073:4136..42001692277579.608442-CDS-M-pyrifera_M_contig13073:4136..4200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 4137..4200 -
1622815807.1713452-CDS-M-pyrifera_M_contig13073:4623..48591622815807.1713452-CDS-M-pyrifera_M_contig13073:4623..4859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 4624..4859 -
1692277579.6187484-CDS-M-pyrifera_M_contig13073:4623..48591692277579.6187484-CDS-M-pyrifera_M_contig13073:4623..4859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13073 4624..4859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13073.5840.1

>prot_M-pyrifera_M_contig13073.5840.1 ID=prot_M-pyrifera_M_contig13073.5840.1|Name=mRNA_M-pyrifera_M_contig13073.5840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MSSPPKPASPWAVKLANEGKEQGVPVEKIRQKLVLEGLEPDLINVVLKGS
GAGGDVGSEEHVAPSSPSTSPQRQQLSARKFHDMLLVGLPPAVVRQKMAM
EGCPPEEINTFFAS
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mRNA from alignment at M-pyrifera_M_contig13073:1665..4859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13073.5840.1 ID=mRNA_M-pyrifera_M_contig13073.5840.1|Name=mRNA_M-pyrifera_M_contig13073.5840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3195bp|location=Sequence derived from alignment at M-pyrifera_M_contig13073:1665..4859- (Macrocystis pyrifera P11B4 male)
ATGAGCTCGCCACCGAAACCCGCGTCCCCATGGGCCGTGAAGCTCGCGAA
CGAGGGGAAGGAGCAGGGGGTGCCGGTGGAGAAGATTCGCCAGAAGCTGG
TGCTGGAAGGCCTGGAGCCGGACCTGATAAACGTTGTCCTAAAGGGAAGC
GGGGCTGGTGGCGACGTCGGATCGGAAGAGCACGTCGCGCCGAGCTCCCC
CTCGACGTCTCCGCAACGCCAACAGCTGTCCGCTAGGTGGGAGGGAGGAA
TCGTGGGTCACGAGGCAGTTGTCGGCTGTCGTGGGTGTAGTAGTTGGTGT
TGACTTTATAGCGACGGTTGTATGTCTTCTCGCGAAAACACGCACGAACA
AACCTCTTGCATGGAGCAGACACATCTCGTGCTCTTTTTGCTGAATCCGC
GATGTGTACCAGGTAGCTGTTACCACTATGCCCGTAAATATAACGACCGT
TTTATTATCAATGTGAATGATAAATCTGTCCTTATATTTCCGGAGTTAAG
TGGTATTCTGTAGGTACTGCACGTTTTTTCTCAAGGGGCCTGCTTTCCTG
TGCAGCAGTACTTTGAACCGCTTTTCTCTTTCCGTGACTGCTGCGCTTTG
CAAATAAATACCGATCCCGATGCATGCTTGATGTTCTCCCCTCACGTCCA
CATGGGCAGGAAATTCCACGATATGCTCTTGGTCGGGCTGCCCCCTGCTG
TCGTGCGGCAGAAGATGGCCATGGTGAGGAACTTTCGGTGTCGAGCGACG
AATGGGCATGGACAACGTCTGCTGTTTGTCTTGTCTGTCATGTTGCTCTT
TGCATGCGTACTCTATCTACTACTGCTTTTTGTTCGTGCCGGCTTGCCCC
CTTTGGCAGCTGCAGAGTCACGTTTCCGTTGAGACTTGACAGTGAGCCAG
ATCATCTTCATGTCCATAGACCGCCGCTTATTTCGGAGCCCACATGATAC
CTTTTGCCTTGTTCCTCCTAAACCATCTCAGACAGATAGGGAACGTTCGT
CCTGGCAGCCACTGCTTCGCCGTGTCAAGTTCGAATCGTTAACACTGCTG
CTGCTCTGCTGTTGTTCAGTGATTGTGTGACGTGTTCAGGAAATAACAGG
CTACTAGGTGCAGGTGGTTTTGGGGAGAGAATATTCGTTGGGCATGGTAC
CTTGCCTCTGTACTTTAGAATCCAATACGAACGTAAAAAAATTCGGGGGG
GCCCAGTTTTTATAAGTGACGATCAATAAAAGTTTTGAAAAAGTACGCAC
ACGTGCGTGCGTGGGTTGGGTGTCGCCCTCCCAGCAGCCTCCGCGAACTT
TGCTGTTGGCTCGCTGTGATGTGTTCAAATGTCGCACCTAGAAGGCCTTG
TTTCGCCAGCTACGTACTACATAATAATCCTGCTGCGTCACCAGATGGTT
CTTGCCTCGCGACTATTAAACACTAATATCAATACTACAGCAGTGTACCT
ACTGTTTATAGGTACATGTTACCAGGTATCGTATTGTTCGTGTGGTGTAT
ACGTACCAGGTAAACACTGCGGGTACCCTGCACAATCTCCGTCGCGACTG
CTGCTTGCTGTGTCGGTGTTGACGAGCCACAAGTACTCCATGCACTAACT
ATTAATAGTGCGCTCGTACGTACTCGTACGCACGTCTCCGCTATCGACGA
CGTATCATAGCGGCGCCAGTTTTCACAACGGCCACAATCTACCGGTAGTA
TCGGGTGGGTATCGGTAGTATCGGGTGGGTATCGTACAATTTTGGCGCCT
TGTGCTGCTACGATGGCCCCTGAAAAGTGGAGCTGGTGGGGCCCCTCTCA
TCTGCGGGCTGTCGTTTGTCGTGAGCCATGCCATCCAGTGAGTTGCTCTA
TTAATAGGCTCGTGCATGTTGAATGTATCATACCATTATATACATACGTG
TATGATATGTATGCGCGTCAATAACGAGTTCAGTTCCGAGTTCTGAATGA
AATAACTCAAGGACGCGGCCACAGCAGGAAAAAGAGAGTTTTTCTTCGTT
GTTTTTTTTTGCACCTCCTGCTTTCTGAACCAAATGGTCAGAGAGCTGAC
TATTATTTCAATTATAAATTACTGTACTCCATGACATATCAGGTATGTAT
ACAACTGCTGCAAAAGTCACGCAGCTTGACAGGCAGCGAGAAGTCGAGGG
CCTTACTATTAATACTGTCTTTGAATCGATGTTTCCTATACAGCATACCA
GTAAATATTGGGGAGACTTGTTTCTGATTGTACACGAGATTTTCCGGCCC
CCTCCGCGCAGGACTGACTCATCTGGCGGGGGGCGAGAGCCGCTAAATAC
ACGAGAGGGCAAAGCGAATTGAGCACCCTGCTTCTCTGATGTACAACAGC
AGCAGCACTGTTGAAAGTACTATTACGGGGGTCCATAGTTAATGGGACCG
ATGGTGTACATAAAAACCTATATATTTAAGTATTTTTACTAACAAAATTT
GGTCCCATTAACTATGGACCCCCGTAATATTACTACTGTGTAGTACGCCA
GTAGAGAGCCATGGTTGATTTCTCCGTAGCCAATAAAAAACAGATAATCA
TATACTCCCTCTGTTTCATGAGTATTTTTCGCCCCATGTACATATTAATA
GTACTGGCCCGCTCATACTCAAGTAACTCACAGAGAAAGTCAGCCTGAAG
ATTTGACATTAAATTAAGAAAGCTCTCAGCCTACCGCAGTCGATGCCTAA
GCTGTTAAGAAAGCTGACCGGTTCCCGTGGCTGACCTGGACCCAAGGCGC
CATTCATTGTGCACTACCTAGGGAAAACGTCTTCTCGTGGACCAAATTAA
GAAAGCGCAGCATAAGAAAGTGTGCTTTCAGGCGCGCCCAGAATAAGAAC
GTCAGCCTGACCCTGCTTTCAGGTTTCTTGTGAGAGAGCCAGTACTGTAC
ACCTGGGTGTAACGTGTTACTTGTGAGTTATCTATCCTTAGAGCTACGTA
TCCGGCTCTATACCTACATCCACATGCAGTAGTAGTTGTGCATCCGTGAG
ACGCTCACCAGTAGTATTTTTTTTTTATTTTTTTTTGGATCCTCCTTGGA
GACCTGGGTAAAAAAAGCTTATTGTGTATCGTTGGTACGTGCGAACAGCA
GCTTGTAACGGTCCGTTTTCTTTTTTTTCTTTTTTTTTGGTGCTGTGAAA
CAGGAGGGATGCCCACCGGAGGAGATCAACACGTTTTTCGCCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13073:1665..4859-

>mRNA_M-pyrifera_M_contig13073.5840.1 ID=mRNA_M-pyrifera_M_contig13073.5840.1|Name=mRNA_M-pyrifera_M_contig13073.5840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig13073:1665..4859- (Macrocystis pyrifera P11B4 male)
ATGAGCTCGCCACCGAAACCCGCGTCCCCATGGGCCGTGAAGCTCGCGAA
CGAGGGGAAGGAGCAGGGGGTGCCGGTGGAGAAGATTCGCCAGAAGCTGG
TGCTGGAAGGCCTGGAGCCGGACCTGATAAACGTTGTCCTAAAGGGAAGC
GGGGCTGGTGGCGACGTCGGATCGGAAGAGCACGTCGCGCCGAGCTCCCC
CTCGACGTCTCCGCAACGCCAACAGCTGTCCGCTAGATGAGCTCGCCACC
GAAACCCGCGTCCCCATGGGCCGTGAAGCTCGCGAACGAGGGGAAGGAGC
AGGGGGTGCCGGTGGAGAAGATTCGCCAGAAGCTGGTGCTGGAAGGCCTG
GAGCCGGACCTGATAAACGTTGTCCTAAAGGGAAGCGGGGCTGGTGGCGA
CGTCGGATCGGAAGAGCACGTCGCGCCGAGCTCCCCCTCGACGTCTCCGC
AACGCCAACAGCTGTCCGCTAGGAAATTCCACGATATGCTCTTGGTCGGG
CTGCCCCCTGCTGTCGTGCGGCAGAAGATGGCCATGGAAATTCCACGATA
TGCTCTTGGTCGGGCTGCCCCCTGCTGTCGTGCGGCAGAAGATGGCCATG
GAGGGATGCCCACCGGAGGAGATCAACACGTTTTTCGCCTCCGAGGGATG
CCCACCGGAGGAGATCAACACGTTTTTCGCCTCC
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