mRNA_M-pyrifera_M_contig13058.5828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13058.5828.1
Unique NamemRNA_M-pyrifera_M_contig13058.5828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13058.5828.1 vs. uniprot
Match: A0A6H5K7N3_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7N3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.450e-11
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:  234 FSLKGQVIAAIVVTAVAGNILGARRFRKTMVDQVARNAQR-KAETERMAKAARDRASKARSTGAA 425
            F+  GQV+ AIVVTA AG+I GARRFRKTM D V+RNAQR KAE E  A+AARDRA+   + G A
Sbjct:   26 FAFTGQVLTAIVVTAAAGSIFGARRFRKTMTDTVSRNAQRRKAEAESAARAARDRAAARANAGGA 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13058.5828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N3_9PHAE1.450e-1164.62J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13058contigM-pyrifera_M_contig13058:1953..6139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13058.5828.1prot_M-pyrifera_M_contig13058.5828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13058 2057..6139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.0382526-UTR-M-pyrifera_M_contig13058:1952..20561622815806.0382526-UTR-M-pyrifera_M_contig13058:1952..2056Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13058 1953..2056 +
1692277578.8669715-UTR-M-pyrifera_M_contig13058:1952..20561692277578.8669715-UTR-M-pyrifera_M_contig13058:1952..2056Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13058 1953..2056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.0496352-CDS-M-pyrifera_M_contig13058:2056..21141622815806.0496352-CDS-M-pyrifera_M_contig13058:2056..2114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 2057..2114 +
1692277578.8787587-CDS-M-pyrifera_M_contig13058:2056..21141692277578.8787587-CDS-M-pyrifera_M_contig13058:2056..2114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 2057..2114 +
1622815806.059882-CDS-M-pyrifera_M_contig13058:4972..51231622815806.059882-CDS-M-pyrifera_M_contig13058:4972..5123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 4973..5123 +
1692277578.8938677-CDS-M-pyrifera_M_contig13058:4972..51231692277578.8938677-CDS-M-pyrifera_M_contig13058:4972..5123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 4973..5123 +
1622815806.0735767-CDS-M-pyrifera_M_contig13058:6027..61391622815806.0735767-CDS-M-pyrifera_M_contig13058:6027..6139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 6028..6139 +
1692277578.902256-CDS-M-pyrifera_M_contig13058:6027..61391692277578.902256-CDS-M-pyrifera_M_contig13058:6027..6139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13058 6028..6139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13058.5828.1

>prot_M-pyrifera_M_contig13058.5828.1 ID=prot_M-pyrifera_M_contig13058.5828.1|Name=mRNA_M-pyrifera_M_contig13058.5828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MDVAAGGGGAGEEDYSKPKGTVVSAGAAAIAAEKEAGEKEGVTFSLKGQV
IAAIVVTAVAGNILGARRFRKTMVDQVARNAQRKAETERMAKAARDRASK
ARSTGAA
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mRNA from alignment at M-pyrifera_M_contig13058:1953..6139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13058.5828.1 ID=mRNA_M-pyrifera_M_contig13058.5828.1|Name=mRNA_M-pyrifera_M_contig13058.5828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4187bp|location=Sequence derived from alignment at M-pyrifera_M_contig13058:1953..6139+ (Macrocystis pyrifera P11B4 male)
GGGAATGACTAGGACCTAGTCATTCCCATTGGTTGTTGCTCTACAAGCTG
GTGCTGTGCTGCTGTGCTGCTCGGTCCCCATCTTCTGGTGCTGTACGCTG
CGCTATGGATGTAGCTGCGGGTGGTGGAGGCGCTGGGGAAGAAGATTATA
GTAAGCCCAAAGGTGATCACGTGGTAGCGTTCTGTCGGGTAATGTTTATT
TCGATTTATGGGCAGGCTTCTGCGACTGGTACAGAGTATAAACTTGTATA
CTTGCGGTATGACATCATAGTCTCGTGCTGCTTACCCGTATACCAGGTAC
CAAGGCACAACAACAGAAGTAGTCACGTGGTCGCAGCTCCGAGGGAACGA
AACACCACCACGCCTACGACACGGACAGTCGTTTCACAGAGGGCCGAACT
TTGCCGTAACGTGCGAACCTCAGCAAGAAAAAAAACGCAAAACGCGTTCG
AACGAACTGCAAGTGGACCAGCCACGACAACGACAAGAGCAGCAGCAGCA
GCAGCAGCATAGAGTTGCACCCCGGCCTCAAAATGTGGAACCAGGTACCC
GACCGGGTGGGGGGCGGTTGAGGCGGAACCGGAACCGGGTACCCGGGTCC
CAGGCAGACACGGGTACCCGGGTTACCATGCACTATTTGCTCCCCTTTTA
GCCTGTGAGCGGCGGCGGGTAAGGCGGACACGGGTATCCGGGTTCCCGGG
TACCCAGGTACCCGGGTTCCCAAACACTATTTGCTCCCCTCGTAGCCTTT
GAGCGGCGGGGTGGTAAGAGGCGAAAGGTAGGAAAGCATGACTTCTCACT
TCGCCGCTCTCGATGAATCATGCCAAAGAAAGAAGGCTAAATGTATGTAA
ATAGGGGTATTCTCTGTGGGATCGAGTAGAGAAGTGGGGAGTGATGGGGA
GTGGAGAGTTGAAGGAAAAGCATGGGATGTAATTCTTCCTACCCTTTTTA
TTGCGCTCGTCAAGTCAAAAGGAGTATCCTTCAAATATATTTGGTTGCGT
CAAACAAATCGTGCTACAAAAACCCCCACACACCCTGAAACAACGAAGAA
GGAAGTAAGAAATAAATGTTGGGGAAGCCTTCGCCCATACTGCTGCAACA
AAAAAAACACGTCACTCCCTAGGTTTAGCTAGGGTTTCTATGGGCAAAAT
TAACAACCTGGTAAGGGCATCGTGTGTGTCATGTTGTGCGAAGGCAGGTA
CTAATAGGGGTATTCTCTATTCTCGGTCTGTAGTCTGCAGGGGCGAGAGG
CAAGAAGAGTCTAGAGGCACAGCCACTGCGGTGTATGCATAAATCAACGT
ATACCCTAGTCTTGGGGGCTCGGTATAGAACAATTGACGGGTACCCGGGT
ACCCGGGGTAAAAATACCCGCGATTCCGTGAGTTGGACCGGGACGGTTCC
GGTTCCGACGGTTCCGGGTACCCGCCACCGGGTACCCGGTTTTCAGTCAG
ACGGGGTGCAACTCAGCAGCAGCAGCAGTACCGGTATGCCGTTGGTCGGG
CTGGTTATTGGCGCAGTATATACTGCCAGTACAATAGTTGCACTGGCAGT
ATACTTATACTGGCTGAGAGCACCAGCATAGCTGAGCAGTAGCATACAGC
AGTATTGACTATAGACACTCGCAGAAAATTACGTATTTTTCGCCCCAAAA
AGCACAATCTACTATTAATACGTATATAAGGCTGAATCTTACGGGAGCCG
AAACCGGAAAACAAAACTGGCATGCACTTCTGTTTTTCGTATGGCCTAGA
TTCGTCTATCGAGTTTCGTCTTTTCCTATCTTCTGCTGTTTTTTGTACTT
ATACCGGGGTTTCGTTTGAGTTGGGAGGACGCTGGAGGGAGGAGTTACCG
CGATATTTGAATTCGGCGGACACAGCAGTACGCGGCACCCACGCATCCTG
TTTGGCACCCGCCCGGCGGTAAATTGAGGCTTGCTTTCGCAGACTCGAGC
TTCTTGGACTGGGTTGGCTTCCTTCGACGAAGGGTCCTCAAGCTTGGCAG
TCTGCTGCACCATCAAGGAGCAGTGCGTCGGCATTGCAGCAAGCTCAAGA
ACACAACGACAACCGCCCATGCGGTGCAGTCGGTTGTTCGCCGTCACCGG
AACTTGGTGTCTGTAGCTACCGCTATATGCCGGGATATCGTGTCAGAGAT
ACCGAGAGAGTGCAGCAGAAGTAGCGATGATATGTACAAGTATTAGGCCC
GCCATGTTATGCCTTCTGTGTGGAGTTCAAAACCTCAGTTTCGGTCAGCT
CTTGGACCGTACAGATGTGGTGTCTGGTTTCGTCTGGCGAGGCCATTTCT
GATTGAGATACAGAAACATGTTTTAGATATTTCTGCTTTTTGTCCATCAA
TAAGATTCGATAAAATGATAAATCGGATCTGGCACGAAATTATTCCTGGA
TCTCTCTACAAACCCTGTTCTGTTTTCCGGTTTCGGCTCCCATAAGAGTC
AGCAAAAGTAGAACGGAAAACGTCACAAATGAAGAAATGAGTCCACGAGA
GAGGGAGTTCGTAGAGATAAAGAGAGGGGGACCTTGCACACGATGGACGA
AGTTGTGTCCAGCGCTCCCCACTCCAACTCTTTTTGCCCTGGATTGAGAT
GATGAGTGAAGCGAGATCACACGCAAAAAAAAACTCCTCCGGCGCAGGGC
CCCCCGCCAGCGGGGGGCGGGGACGATGGCTCGCCACGAGAGGCGGCTTG
GCCGCCAGGTTGAGGCTTCGCCTTAACAGTATACTGAGGGAATCCAGTAT
ACTGGCTGCGCCAGCCAGTACCCGGCCCTCCTAGCTGTTGCTGTAGTTGT
CACATGTTTTGCTGTACGATATATACCCCTCGAATAAGTCCCTGTCTACA
AATAGTATCCATCCGGTGCTGCGGCATCTCGTTTGGGGAGAAGGCGCTGG
CTGATTCTGCTCCACAGATTGCTGCTCCTACAGTATATATTAGGAGTGTG
TCTGCCCTGAACGATCCAGATCATTAAACGAGGATCGGTTATCTGACCGA
TGTGTGGAACGTTTCGGAAGGTACCGTCGTTTCTGCTGGCGCCGCTGCCA
TCGCCGCCGAGAAGGAGGCGGGGGAGAAGGAGGGAGTCACGTTCAGCCTC
AAGGGGCAGGTTATCGCCGCCATTGTCGTCACCGCCGTAGCCGGGAACAT
TCTTGGAGCACGGCGGTTCAGGTACGTCCCCGCTCGGGATACATTCCCGC
TCTCGTACACCTCGGACTTAGCGCGGTGAGACCTCGCTATAAATCCCTTT
GTCCTCTTCCGGGTGGGCATATGTAATAATCAGCAACCCACGATGGACCC
GAAAAAAAACAGGTATATCCCCCCACGTTTACACACCGTATTTGGTTCTG
ATTGCTATGTTCCACCGTAGTAAAAAGCAGAGAATGCCCTACGCTCTCGT
AGCTGGGTGGGAGGGATGGTCCCCATTTCTTTCTCCCAACTCGTGTGGTA
TGATATGATCTCGCTTGTGGGTCTATCGTGTCACCGCTTCTGTTCAGATG
TTCGAACCGTTTTAGCCGGTGATGAGGCCCAAAATCATGGACCCACTGTT
TCATGGGCTCCGGTCTGGCCTTGTAGGGGATACCACCTCTGTCCCAAAAT
GCAGTGACCGAATGTATTTGATTTGTTCTTCACCCGGTGTTTCGGGACAT
CGTGTGGTATATAGGCATGGGAAAGTAGAGCGTGGTGGTGGTGGTGGTGG
TGGTGGTGGTGTGTGTTCGCGTGTGTTCGCGTGTGCGTATTTGTTGTTCA
CGACGATGATAGTGGTGGAGGGTGTGGGCGGGGGGGGTGATGGTAGACTT
GGTGTTGGTGCTGGTGGTGGGGGTAGCGGTAGTGATGGCGGTGGTGGGGA
GGGGGTGGTGGTGATGGCGGGGGTGGTATTGGTGTTGGTGGTGTTGGTGG
CCTCTGCAGAAAAAGCGTGGTGGATAGGAAGATACATAGCCCCGCTAGGG
TAATTTTTTCACTCTTTTCAAACGCGTCTTTTGTATGTCGCTTTTTAAGC
ACGTGTTGTGCCTTTTTTTCAACCACTGTGTGTATTGTCGCCCCGGAACG
AAAACGAAACGCCTCCTCCCCGCAGAAAAACCATGGTGGATCAGGTGGCC
CGCAATGCTCAGCGCAAGGCCGAGACGGAGAGGATGGCGAAGGCGGCGAG
AGATAGGGCCAGTAAAGCGCGGAGCACCGGGGCCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13058:1953..6139+

>mRNA_M-pyrifera_M_contig13058.5828.1 ID=mRNA_M-pyrifera_M_contig13058.5828.1|Name=mRNA_M-pyrifera_M_contig13058.5828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig13058:1953..6139+ (Macrocystis pyrifera P11B4 male)
ATGGATGTAGCTGCGGGTGGTGGAGGCGCTGGGGAAGAAGATTATAGTAA
GCCCAAAGATGGATGTAGCTGCGGGTGGTGGAGGCGCTGGGGAAGAAGAT
TATAGTAAGCCCAAAGGTACCGTCGTTTCTGCTGGCGCCGCTGCCATCGC
CGCCGAGAAGGAGGCGGGGGAGAAGGAGGGAGTCACGTTCAGCCTCAAGG
GGCAGGTTATCGCCGCCATTGTCGTCACCGCCGTAGCCGGGAACATTCTT
GGAGCACGGCGGTTCAGGTACCGTCGTTTCTGCTGGCGCCGCTGCCATCG
CCGCCGAGAAGGAGGCGGGGGAGAAGGAGGGAGTCACGTTCAGCCTCAAG
GGGCAGGTTATCGCCGCCATTGTCGTCACCGCCGTAGCCGGGAACATTCT
TGGAGCACGGCGGTTCAGAAAAACCATGGTGGATCAGGTGGCCCGCAATG
CTCAGCGCAAGGCCGAGACGGAGAGGATGGCGAAGGCGGCGAGAGATAGG
GCCAGTAAAGCGCGGAGCACCGGGGCCGCAAAAAACCATGGTGGATCAGG
TGGCCCGCAATGCTCAGCGCAAGGCCGAGACGGAGAGGATGGCGAAGGCG
GCGAGAGATAGGGCCAGTAAAGCGCGGAGCACCGGGGCCGCA
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