mRNA_M-pyrifera_M_contig13029.5823.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 174 bits (441), Expect = 5.730e-48 Identity = 78/119 (65.55%), Postives = 102/119 (85.71%), Query Frame = 1
Query: 16 NPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITGKPVPKRVESTIGIDIIEDWKPVESGPLEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNLRA 372
NP+ RPP T++ESG ++A+ WW+D++RFGE SNKLKMVLVGL+ AGKTT+VR++TG+ VPKR + T+GI+I DWKP + PL+V++WDFAGQA Y++SHQLFLTKGALFLLVV+L A
Sbjct: 248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMTGRSVPKRSDRTVGIEITTDWKPGDEVPLQVSVWDFAGQADYYSSHQLFLTKGALFLLVVDLHA 366
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 142 bits (358), Expect = 8.970e-37 Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 1 LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITG-KPVPKRVESTIGIDIIEDWKPVESGPLEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNLRALAVD 384
+ V NP++RPP + G+ A WW I RFGE TS+KLKMVLVGL+EAGKTT+VR+ TG P KR TIG+++ E WKP ++ PL V++WDF+GQ+ YHASHQ+FLT+GALFLLVV+L L D
Sbjct: 388 VSVNGNPWVRPPRAFLARGLVSAGRWWDGIARFGEGTSSKLKMVLVGLAEAGKTTIVRHFTGGDPADKR---TIGVELSE-WKPNKNLPLAVSLWDFSGQSDYHASHQIFLTEGALFLLVVDLFELGRD 512
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.800e-26 Identity = 61/142 (42.96%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 1 LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITG----KPVPKRVESTIGIDIIEDWKPVESGP----------LEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNLRALAVD 384
+ G+NP+ PP +++ G+ A S+ KD+E FG +SN+LK+VLVGL AGKT++ + G KP+P E T+G++I D + + SGP L+V +WDFAGQ Y+ +HQ+FLT GALF+LVV++ A + D
Sbjct: 8 VSTGNNPWTEPPADVLQVGLAYAASFLKDLEDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEI-RDIR-LGSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSED 147
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 105 bits (262), Expect = 7.580e-24 Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1
Query: 13 DNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITG----KPVPKRVESTIGIDIIEDWK---PVESGP-----LEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNLRALAVD 384
+NP+ PP ++E G+ A + KD+ FG +SN+LK+VLVGL AGKT++ + G KP+P E T+G++I + P G L+V +WDFAGQ Y+ +HQ+FLT GALF+LVV++ A + D
Sbjct: 184 ENPWTEPPADVLELGMAYAARFLKDLNDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQLAPGPANGGSRGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSED 319
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.390e-23 Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 10 GDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITGK---PVPKRVESTIGIDIIEDWKPVESGP------------LEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNL 366
G+NP+ PP +ME G+ + KD++ +G N+LK+VLVGL EAGKT++ + G+ PK E T+G++I + ++ GP L+V++WDFAGQ Y+ +HQ+FLT GALF+LVV++
Sbjct: 64 GENPWKEPPAKVMEKGMAHTAVFLKDLDDYGRAWYNRLKVVLVGLGEAGKTSIATRLEGRLGSSCPKPEERTVGVEI----RDIKLGPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDM 193
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 102 bits (254), Expect = 9.040e-23 Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNIT-GKPVPKRVESTIGIDI-IEDWKPVESGPLEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNL 366
+D+ NP+ PP +++ G DQ +S+ + + + G + LK+VLVG AGKTTL R + GK T GID+ I+ W P PLEV IWDFAG YH++HQ+FLT GAL LLVV+L
Sbjct: 148 VDLKGNPWETPPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLPPRTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDL 271
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.240e-22 Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 13 DNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNIT---GKPVPKRVESTIGIDIIEDWK----PVE--SGP---LEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNL 366
+NP+ PP +M G+ A + +D++ +G SN+LK+VLVGL EAGKT++ + G PK E T+G++I D K P SGP L+V++WDFAGQ Y+ +HQ+FLT GALF+LVV++
Sbjct: 320 NNPWKEPPAEVMNKGMAHAAVFLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDRLGSSCPKPEERTVGVEI-RDIKLGPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDM 448
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A3B8Y4X8_9CYAN (GTPase (Fragment) n=1 Tax=Cyanothece sp. UBA12306 TaxID=2055757 RepID=A0A3B8Y4X8_9CYAN) HSP 1 Score: 94.7 bits (234), Expect = 1.500e-22 Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 1 LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITGKP--VPKRVESTIGIDIIEDWKPVESG--PLEVNIWDFAGQAIYHASHQLFLTK 336
L++ +NP PP + GID +++ E GE T + K+++VG GKTTL R I + +P+ E+T GIDI + + P+E P VNIWDF GQ IYHA+HQ FLTK
Sbjct: 10 LELMENPLENPPIEVANLGIDAIRDYFRQKEEEGENTIYEAKLIIVGEGGVGKTTLARKIIDQSCQLPQENETTKGIDIQQWYFPIEGQDKPFRVNIWDFGGQEIYHATHQFFLTK 125
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A1D2QW53_9ARCH (Roc domain-containing protein n=1 Tax=Candidatus Altiarchaeales archaeon WOR_SM1_86-2 TaxID=1849364 RepID=A0A1D2QW53_9ARCH) HSP 1 Score: 100 bits (249), Expect = 4.000e-22 Identity = 49/119 (41.18%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 7 VGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNITGKPVPKRVESTIGIDIIEDWKPVESGPLEVNIWDFAGQAIYHASHQLFLTKGALFLLVVN 363
+G NP PP I++ G D I ++K +E GE+ N++K++LVG AGKT+L++ + G+ + + T GI+I DW ESG ++V+ WDF GQ I HA+HQ FL++ +L++LV++
Sbjct: 73 LGGNPLESPPVEIVKQGRDAVIEYFKSLEEAGEQPLNEVKVLLVGDGGAGKTSLMKQLLGEEFDRSEKQTHGINI-RDW---ESGDIKVHFWDFGGQEIMHATHQFFLSRRSLYILVLD 187
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.850e-22 Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 1 LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEAGKTTLVRNIT---GKPVPKRVESTIGIDIIEDWKPVESGP------------LEVNIWDFAGQAIYHASHQLFLTKGALFLLVVNLRALA 378
+D +NP+ PP +M+ G+ A + +D++ +G SN+LK+VLVGL AGKT++ + G P E T+G++I + ++ GP L+V++WDFAGQ Y+ +HQ+FLT+GALF+LVV++ A A
Sbjct: 21 VDTDNNPWKEPPADVMKRGMAYAAVFLRDLDDYGRAWSNRLKVVLVGLGGAGKTSIATRLEDRLGGCCPNPEERTVGVEI----RNIKLGPGATSEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTQGALFVLVVDMFAYA 157 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13029.5823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13029.5823.1 >prot_M-pyrifera_M_contig13029.5823.1 ID=prot_M-pyrifera_M_contig13029.5823.1|Name=mRNA_M-pyrifera_M_contig13029.5823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp LDVGDNPFLRPPPTIMESGIDQAISWWKDIERFGEETSNKLKMVLVGLSEback to top mRNA from alignment at M-pyrifera_M_contig13029:8627..9010+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13029.5823.1 ID=mRNA_M-pyrifera_M_contig13029.5823.1|Name=mRNA_M-pyrifera_M_contig13029.5823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig13029:8627..9010+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13029:8627..9010+ >mRNA_M-pyrifera_M_contig13029.5823.1 ID=mRNA_M-pyrifera_M_contig13029.5823.1|Name=mRNA_M-pyrifera_M_contig13029.5823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig13029:8627..9010+ (Macrocystis pyrifera P11B4 male)back to top |