mRNA_M-pyrifera_M_contig12935.5790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12935.5790.1
Unique NamemRNA_M-pyrifera_M_contig12935.5790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12935.5790.1 vs. uniprot
Match: D7G4H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 5.830e-45
Identity = 89/132 (67.42%), Postives = 97/132 (73.48%), Query Frame = 1 
Query:    1 VPRLFEQLRMCFVNAAVTAGRRCPPELLLALCSRGKFLDNFLLGASLGGGFLRAACLQAVFAMVYRTKNLFSGGDGGGGGDAV--GCTRDDVMGVACDALDQGQEEQVRLSGLKLLLGVVAAGASPSTATAQ 390
            VP L  QLRMCF N+AVT  RRCPPE L ALCSRG  L  FL GAS G G LRAACLQA+FA+VYRTKN+F GG   G G  V   CT D VM VACDAL + Q  +VR+SGLKLLLGVVAAGASPS A A+
Sbjct: 1425 VPALPAQLRMCFANSAVTVARRCPPESLPALCSRGNLLGTFLTGASRGSGLLRAACLQALFALVYRTKNVFEGGAISGSGSRVDVSCTCDGVMQVACDALGKDQHPEVRVSGLKLLLGVVAAGASPSAAAAK 1556
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BLAST of mRNA_M-pyrifera_M_contig12935.5790.1 vs. uniprot
Match: A0A6H5KIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.750e-44
Identity = 86/132 (65.15%), Postives = 94/132 (71.21%), Query Frame = 1 
Query:    1 VPRLFEQLRMCFVNAAVTAGRRCPPELLLALCSRGKFLDNFLLGASLGGGFLRAACLQAVFAMVYRTKNLFSGG--DGGGGGDAVGCTRDDVMGVACDALDQGQEEQVRLSGLKLLLGVVAAGASPSTATAQ 390
            VP    QLRMCF N+ VT  RRCPPE L ALCSRG  L   L GAS G G LRAACLQA+FA+VYRTKN+F GG   G G      CT DDVM VACDAL + Q  +VR+SGLKLLLGVVAAGASPS A A+
Sbjct: 1516 VPAFPAQLRMCFANSVVTVARRCPPEFLPALCSRGNLLGTLLTGASRGSGLLRAACLQALFALVYRTKNVFEGGAISGSGSRGGASCTCDDVMQVACDALGKDQHPEVRVSGLKLLLGVVAAGASPSAAAAK 1647
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12935.5790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4H8_ECTSI5.830e-4567.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIR6_9PHAE2.750e-4465.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12935contigM-pyrifera_M_contig12935:2967..7909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-07_000560.1
Exons4
Model size390
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12935.5790.1prot_M-pyrifera_M_contig12935.5790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12935 2967..7882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.8083417-CDS-M-pyrifera_M_contig12935:2966..30411622815802.8083417-CDS-M-pyrifera_M_contig12935:2966..3041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 2967..3041 -
1692277577.002469-CDS-M-pyrifera_M_contig12935:2966..30411692277577.002469-CDS-M-pyrifera_M_contig12935:2966..3041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 2967..3041 -
1622815802.8254123-CDS-M-pyrifera_M_contig12935:5875..59491622815802.8254123-CDS-M-pyrifera_M_contig12935:5875..5949Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 5876..5949 -
1692277577.0159492-CDS-M-pyrifera_M_contig12935:5875..59491692277577.0159492-CDS-M-pyrifera_M_contig12935:5875..5949Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 5876..5949 -
1622815802.8379884-CDS-M-pyrifera_M_contig12935:6342..64091622815802.8379884-CDS-M-pyrifera_M_contig12935:6342..6409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 6343..6409 -
1692277577.0292387-CDS-M-pyrifera_M_contig12935:6342..64091692277577.0292387-CDS-M-pyrifera_M_contig12935:6342..6409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 6343..6409 -
1622815802.8526497-CDS-M-pyrifera_M_contig12935:7735..78821622815802.8526497-CDS-M-pyrifera_M_contig12935:7735..7882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 7736..7882 -
1692277577.0447083-CDS-M-pyrifera_M_contig12935:7735..78821692277577.0447083-CDS-M-pyrifera_M_contig12935:7735..7882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12935 7736..7882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.8637938-UTR-M-pyrifera_M_contig12935:7882..79091622815802.8637938-UTR-M-pyrifera_M_contig12935:7882..7909Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12935 7883..7909 -
1692277577.0565827-UTR-M-pyrifera_M_contig12935:7882..79091692277577.0565827-UTR-M-pyrifera_M_contig12935:7882..7909Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12935 7883..7909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12935.5790.1

>prot_M-pyrifera_M_contig12935.5790.1 ID=prot_M-pyrifera_M_contig12935.5790.1|Name=mRNA_M-pyrifera_M_contig12935.5790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MCFVNAAVTAGRRCPPELLLALCSRGKFLDNFLLGASLGGGFLRAACLQA
VFAMVYRTKNLFSGGDGGGGGDAVGCTRDDVMGVACDALDQGQEEQVRLS
GLKLLLGVVAAGASPSTATAQ
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mRNA from alignment at M-pyrifera_M_contig12935:2967..7909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12935.5790.1 ID=mRNA_M-pyrifera_M_contig12935.5790.1|Name=mRNA_M-pyrifera_M_contig12935.5790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4943bp|location=Sequence derived from alignment at M-pyrifera_M_contig12935:2967..7909- (Macrocystis pyrifera P11B4 male)
GTTCCTCGTCTTTTTGAGCAGCTGCGGATGTGCTTCGTCAACGCGGCCGT
CACGGCTGGAAGGCGTTGTCCGCCGGAGCTACTGCTGGCCCTCTGCAGCC
GTGGGAAATTTCTGGACAATTTCTTGCTGGGGGCGTCTCTTGGCGGCGGT
TTTCTTCGAGCGGCCTGCCTTCAAGTGAGGGGGAGGGTGTTGAGGCAGGG
AGGGGGGGGGGGGGGGAGGGGCTGCGACCACGGCATGTTCCAACTGCCGC
CGAGCGTTGAAGCCTCCTGCGAGTGGGATGGCAACGTAGTTGCTGGAGGA
ATACAACAGGCAGTGTGATGGTGTAGCTGTCGCCAGATACAACTCCCGGA
GCAGTATATGTTTGAAGCTGTCGTCGACTCGTCTGCGTTGGTTGAGGACC
CGAAAACCCGTGTAACCGTCCATGCTTTCATACCGTACTTGGTTCTGATT
TATTGTCGCATGACACGGGTGATGAAATTGACACACCGTATCACAGGGGG
GTGATGAGATAACACGCACCCCGGGATGATGTTTCTGTGGCGCGCACAAC
GAAAGTAGCGGCTTTTTGGGGGGGAAGATCTTGCGGATGTGTTTCCATCG
ACCGCGTCTCTCGGCGTTACTGCTCTACCCGTCGTCGATAAAATCTTTTT
TTGAAATTTTTCGGAGGGGGGGGGTGTGTTATTTTATCACCCTAGTGTGA
TACGGTAAGTGTATTGTCTCACCACACGTGCAATACGGTAGTGTGGTGTT
TTATCACCCGTGTGGTGCGGTGTGTTGTATTATTCCCCGTGGGATACGGT
AGTGTGGTGTTTTATCACCCGTGTGATACGCTGGTGTGTTATCTTTGCCA
GCCGCGTGGTATACGGCGTGTTGCCTTATTGCCCGTATTGCCTTGGCAAC
CGTGCAGGTCGGATGTGTTAAATTATCACACGTGTGATACGGGGATGTTA
CCCTAGTATCCGTGTGATGCGGTAAGCGTGCTATATTATCACACGTCTGA
TACGGTAGCATGTTGTCTTGTCACTGATAAGGCCGTGTGTTATCTTACCA
CCCGTGTGATAAGGCCGTGTGTTATCTTACCACCCGTGTGATAAGGCCGT
GTGTTATCTTACCACCCGTGTGATAAGGCCGTGTGTTATCTTACCACCCG
TGTGATACGGTGCTGTGTTTCCCCCGTAGTTGGTGAAGCTCCGTCTCCGG
TCGCAGAATACAGCTTCAGCCAGCTCGAAAGATCCCCCCGTTTTATCTGG
CGCGGCTTTCAAGCGAGAAAAACATGTTTCGCTCGTAATTACCAATACTT
ACAAACTGCGCCACGCTTCGGCGGCCTGCCCGCCGCCAGTGCTGCCGAAA
AAAATGCTCGATTTTGCTGAAACCGCGCTGGAGGTGTTTTGCCGGAAGCT
TGTAGGTACAAAAGTCCCGTCCACCATCTGTCGTGGTGACTCGTCAAGCC
TTTTTTATTCTGACCCCGTTGTTTGCTGTACGTATACCTGCTATGTATAG
GCGGTGTTCGCCATGGTGTACCGGACCAAGAACCTCTTCTCCGGGGGCGA
CGGCGGCGGCGGTGGTGGTGGTGGCGGCAGTGTCATCACCGGTGGCATCG
GCGTTATCAGTGGCACCACCAGTGGCATCGGCGTTATCAGTGGCACCACC
AGTGGCATCGGCGTTATCAATGGCACCGCCGGTGGCATCGGCGTTATCAG
TGGCACCGCCGGTGGCATCAGCGCCACCATCGCGCCTAACGCCAACACCA
ACGCCTCTTCCGCCGCCACCAACTCCACCACCACCACCAACGCCGACACT
AACCCCAAACCCGACAACGTCCTCGACACCAACTCCCACGACAGCGCCAA
CACGAACACCGCCAAGTCCGCCATCAACACCGCCTCCGCCGGCACCAAAA
CTACCACCACCGCCGCGAGTGTCATCGTTACAGGTCGTGGCGCTAGGATC
GGTGCCGGAGACGCGGTCGGGTGCACGCGCGACGACGTGATGGGGGTGGC
CTGCGACGCCCTGGATCAGGGCCAAGAGGAACAGGTGCAGGCAGATGCAT
GGTAGCGGGTGGGGGGGGGTCAGCCCAACCTAATGTTTAGGAGCTCTACG
CCTCATCCCAAACCCTGACTGCGAGAAGAATCATATGATACCGTAGCGCC
GCTGTATCGTACCGCTGCTGTATGACGATTTTTTTTGTGTGTCAATATTT
GATACTGGTACATCGTTGCCTTGAAAACTGGAATGAATGCCCGACCCCGA
GTTTCTTCAAAGCAAGGGAGGAAGGAGCACACACAGTAAGTGTTGGTGGC
TTTAAATTTGTCGTGACGACGAGATAGATGCTTCCATTGTAGCCGCGTCT
CTCGACGTTTGCTCCTTCCTCGGTAGGTCGAGGAAAACAGCTGTCTACAC
TCCTCGGGGGAGGTGTGTGTTGTGTGTCATCAGGCGTGTTGTACGGTGCT
GCTGGCGTAGATTTTTGTTTCGTGTTGACCGCGATCGTGGAACTGCCGTA
GATTTGTTTTGTGTTGGCCGCGATCGGCTGCCGCGGCATCCTGGCGCGCT
AACCAGCACGATGTTCATCACCGTTACACCTACAAAAAAATAATACCTGG
TGCCTGGTGTACCGTAGTAGAGGTGCGTTCAAGGTTCACCATCGCAACAC
CTACAAAAGAGTCACACATGGTACCTGGTATAACGTAGCAGAGGTGCGTT
CAAAAGACAAAACAAAAAGTCCGTTCATGAGGGCGTGACCACGAGTGTCG
AACGCTACAGTGTTACGTTGTCCGAGGTATTAAAAACTGTCACTATAACG
GGGGACCACAGTAAATAGGACCAAATATTGTTGGTAAAAATAGGTAAATA
TATAGGTTTTTATGTGTGCCGTAGGCCCTATTAACTATGGCCCCCCGTGA
TATTAAATACCGTGGTACTCTTCACCCGATGGAGTATTTCGCGGGCGAGG
CATGTTTTGTATCTTAGAAGACGAACGAACGGGATAAAACCGATGAGAAG
GCATGTCTCATCGCCCAAAAAAGACAAAAGCGTTTTTGGGTGATAAGGCA
TGTCTTATTTGGTGAAGGCAAATAAGGCATGCCTTCTTGGGCAGTAAGGC
ATGCCTGCTCGGGCAGTAGGGCATGCCTTCTTGGGCCAAGGCATACCTGG
TGCCTTGTTGGGTGACACGGCGCATGACTTGTTGGGTGATGAAGCATGCC
TCCTTGGACCTTATTGGGTGACAAGGCATGCCTTCCTGGGTGATGGGGCA
TGCTTTCTTGAGGAAGAAGGCATATGCCTTATTGACTTAAGGCACACCTG
GTACCTTGTTGGGTGGCAATAAGGCGTAGCTTTTTGGGTGATGAGGCATG
CTTTCTTGCTTGAGGCATGCCTTATTTTGGTGTCAAGGCATACGTTAACG
GGCGACAAAGCATACCTTTTTGGGTGACAAGGCACGCCTTCTTGGACAAC
AAGGCACCTTTTTGGGCAATTAGGCATACCTTGTCGGGTGACAAGGCATG
CCTCAATGAGATGAGCGATAAATCATGCCTTTTTGGGCGATAGGGCATTT
ATGCCTTTTTGGCAAGTAAGGCATGCCTTCTTGCCAACAAGGCATGCTTT
ATCGTCAAGGCATGCATTTTTGGGCGATAAGGCATGCCTTATTGCCCAAG
AAGGCATGCCTTTTTGCCAACAAGGCATGCTTTATCGCCAAGGCATGCCT
TTTTGGGCAATAAGGCATGCCTTCTTGGGCTATAAGGCATGCCTTCTTGG
GCAATAAGGCATGCCTTACTATGGAGTCAAGGCATACCTTGTTGGGCGAC
GAGGCATGGCTTAATGGGCAATAAAACATGCATTATTTGCCGTATTGAGT
GGTTCCTGAGTTGAGGAGCCCCCCATCAGTCCCAGTGACAGTTTTAGCCA
AAAATTTCCACCCGTTTCCTGGCGTGGGACCCCTACACGAGTGCGGGTAT
TGCTAAACGTTTCGAATATCAGACTTCTGTGTAGTGATACAACACGTGCC
ATGTGATCGAATGTTAATATTACCGCTGACTTGGTTCGTAGTGGAACGTA
AAAACTTTGATGCACAGCTTCTGAGCAACGTAGAACGGGTTTGACGCTCA
AACTTCAGCAATGGTTGAGCAGCCGTGAGATTAACTGGGCCCCGACTTGT
CGACCTGAGTACCGTTCGAACGGCTTGAGCGTTGACACTGCCCATCTTCA
AACACCGTCGAGCAGCGTCGACGTCGCTTGTCGGGACTGAAGCTCCTCTT
GGGCATGCGTAGCTTCCATAAGGCTGAACAACGTTACGTTTGGCCCCCAA
CTTGAGCACCCTTGAAAAACTTGACCGTCGACACCTCATCTTTAATTATG
CTCAACCTTTTTGATGTCGCTCATGCCCACGTCCCGTATATCAACTCCCC
CCCCCCCCACGCTATCACCCCTCCCCTTCATCCTCCGTTTGCAATACCTT
TGTACAAATTTGACCAACCAACCGAGGAAATAAACACCTCTTCTTCCAAT
CCAACCCCATGTAATGTTCGTAACCCCCGCCGCACCCCACCATCACCCCA
CGCCCAATGGTTATCCCGCTTATCCGAAATACTCGATACAACTTGGCCAT
TGACATTTCTCTTCAAAGCCGTTGAAAAACAACAATTTGACGTCATACAT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACCCCCCCCTT
TGGGAGTACAACTCCTTCCACCCCTGGGGGGGGGGGGGGGCTACCCCCCA
CACCCCCCCCCCCCCNNNNNNNNNNCATTTCCCTTTTCCCTCCAAGCCCT
GAAAAAAAAAAAAAGTGTCCCCGTCCCCCCCCCCCCCCCCCCCCCCGCCT
ATACCGCCTTCCCAAAAGGTCCGTTTGTCGGGACTGAAACTCCTCCTAGG
CGTGGTGGCGGCAGGAGCATCTCCAAGCACTGCTACCGCCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12935:2967..7909-

>mRNA_M-pyrifera_M_contig12935.5790.1 ID=mRNA_M-pyrifera_M_contig12935.5790.1|Name=mRNA_M-pyrifera_M_contig12935.5790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig12935:2967..7909- (Macrocystis pyrifera P11B4 male)
ATGTGCTTCGTCAACGCGGCCGTCACGGCTGGAAGGCGTTGTCCGCCGGA
GCTACTGCTGGCCCTCTGCAGCCGTGGGAAATTTCTGGACAATTTCTTGC
TGGGGGCGTCTCTTGGCGGCGGTTTTCTTCGAGCGGCCTGCCTTCAAATG
TGCTTCGTCAACGCGGCCGTCACGGCTGGAAGGCGTTGTCCGCCGGAGCT
ACTGCTGGCCCTCTGCAGCCGTGGGAAATTTCTGGACAATTTCTTGCTGG
GGGCGTCTCTTGGCGGCGGTTTTCTTCGAGCGGCCTGCCTTCAAGCGGTG
TTCGCCATGGTGTACCGGACCAAGAACCTCTTCTCCGGGGGCGACGGCGG
CGGCGGTGGTGGCGGTGTTCGCCATGGTGTACCGGACCAAGAACCTCTTC
TCCGGGGGCGACGGCGGCGGCGGTGGTGACGCGGTCGGGTGCACGCGCGA
CGACGTGATGGGGGTGGCCTGCGACGCCCTGGATCAGGGCCAAGAGGAAC
AGACGCGGTCGGGTGCACGCGCGACGACGTGATGGGGGTGGCCTGCGACG
CCCTGGATCAGGGCCAAGAGGAACAGGTCCGTTTGTCGGGACTGAAACTC
CTCCTAGGCGTGGTGGCGGCAGGAGCATCTCCAAGCACTGCTACCGCCCA
AGTCCGTTTGTCGGGACTGAAACTCCTCCTAGGCGTGGTGGCGGCAGGAG
CATCTCCAAGCACTGCTACCGCCCAA
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